Wall clock time and date at job start Mon Mar 30 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 116.99762 * 2 1 4 4 C 1.39555 * 119.76488 * 359.97261 * 3 2 1 5 5 C 1.37827 * 120.63946 * 179.72245 * 4 3 2 6 6 C 1.39332 * 120.14640 * 0.56033 * 5 4 3 7 7 C 1.47657 * 120.23062 * 179.74310 * 6 5 4 8 8 C 1.36037 * 123.04024 * 64.74708 * 7 6 5 9 9 S 1.70619 * 110.36371 * 179.97438 * 8 7 6 10 10 C 1.75681 * 91.80871 * 359.97438 * 9 8 7 11 11 C 1.33004 * 110.05006 * 0.02562 * 10 9 8 12 12 C 1.50700 * 123.07399 * 180.02562 * 11 10 9 13 13 C 1.41980 * 119.53216 * 359.46769 * 6 5 4 14 14 C 1.40816 * 120.30729 * 180.23121 * 13 6 5 15 15 H 1.07996 * 120.00198 * 24.99886 * 14 13 6 16 16 C 1.39936 * 119.99756 * 204.99423 * 14 13 6 17 17 N 1.30860 * 120.00124 * 17.55431 * 16 14 13 18 18 Si 1.86803 * 119.99966 * 197.55187 * 16 14 13 19 19 H 1.48506 * 109.46820 * 90.00292 * 18 16 14 20 20 H 1.48495 * 109.47177 * 210.00108 * 18 16 14 21 21 H 1.48494 * 109.47204 * 330.00465 * 18 16 14 22 22 C 1.37820 * 119.76520 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47701 * 299.99891 * 1 2 3 24 24 H 1.09006 * 109.47077 * 60.00667 * 1 2 3 25 25 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.68063 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.92669 * 180.30003 * 5 4 3 28 28 H 1.08002 * 124.81663 * 359.97438 * 8 7 6 29 29 H 1.08004 * 124.97945 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.46866 * 269.97554 * 12 11 10 31 31 H 1.09006 * 109.47101 * 29.97265 * 12 11 10 32 32 H 1.09003 * 109.47136 * 149.97411 * 12 11 10 33 33 H 0.97002 * 120.00518 * 179.97438 * 17 16 14 34 34 H 1.07996 * 120.08400 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2810 2.3781 -0.0006 5 6 1.8878 3.6156 0.0052 6 6 3.2777 3.7134 -0.0002 7 6 3.9297 5.0382 0.0002 8 6 3.8249 5.9162 1.0341 9 16 4.7025 7.3396 0.6955 10 6 5.2113 6.7205 -0.8679 11 6 4.7113 5.5033 -1.0610 12 6 4.9652 4.6984 -2.3095 13 6 4.0625 2.5303 0.0000 14 6 5.4684 2.6101 -0.0005 15 1 5.9596 3.4871 0.3944 16 6 6.2291 1.5530 -0.5124 17 7 5.6699 0.6608 -1.2895 18 14 8.0427 1.4154 -0.0867 19 1 8.2013 0.6043 1.1471 20 1 8.7656 0.7601 -1.2061 21 1 8.6029 2.7722 0.1375 22 6 3.4225 1.2774 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.2030 2.3111 -0.0014 27 1 1.2847 4.5114 0.0095 28 1 3.2655 5.7375 1.9405 29 1 5.8376 7.2510 -1.5700 30 1 4.1913 4.9160 -3.0457 31 1 5.9405 4.9613 -2.7192 32 1 4.9474 3.6359 -2.0668 33 1 6.1972 -0.0718 -1.6447 34 1 4.0083 0.3702 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241729903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:35 Heat of formation + Delta-G solvation = 2.291845 kcal Electronic energy + Delta-G solvation = -18677.705729 eV Core-core repulsion = 15859.843935 eV Total energy + Delta-G solvation = -2817.861794 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.92375 -37.85433 -35.71003 -33.62387 -30.48857 -29.79432 -28.95963 -26.92384 -25.78221 -25.21039 -22.56959 -20.95321 -20.21487 -17.78386 -17.43441 -16.86355 -16.13631 -15.16590 -14.83717 -14.75131 -14.71504 -13.41158 -13.26293 -12.99723 -12.61023 -12.42723 -12.27743 -12.02090 -11.67418 -11.36865 -11.29230 -11.22798 -11.11375 -11.04551 -10.77353 -10.46149 -10.25149 -9.89509 -9.79104 -9.55938 -9.15449 -7.98815 -7.58345 -7.49418 -6.95444 -6.64924 -4.44923 1.72483 2.38584 2.65143 2.74875 2.91458 3.05281 3.09270 3.18763 3.58854 3.88636 4.30848 4.54985 5.49009 5.64766 5.67341 5.74267 5.82917 5.89967 6.08718 6.19078 6.23376 6.30621 6.40874 6.48544 6.76206 6.83124 6.98167 7.06115 7.19737 7.25971 7.39754 7.48915 7.68951 7.78690 7.96270 8.03342 8.35081 8.71366 8.80253 8.88732 10.07584 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.008892 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.553190 B = 3148.088659 C = 4845.080670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.132 3.868 4 C -0.318 4.318 5 C -0.041 4.041 6 C -0.186 4.186 7 C 0.009 3.991 8 C -0.265 4.265 9 S 0.085 5.915 10 C -0.251 4.251 11 C -0.058 4.058 12 C -0.100 4.100 13 C 0.156 3.844 14 C -0.439 4.439 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.778 5.778 18 Si 0.902 3.098 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.260 1.260 22 C -0.195 4.195 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.152 0.848 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.283 0.717 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 4.813 0.436 5.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.088 3.912 4 C -0.338 4.338 5 C -0.060 4.060 6 C -0.190 4.190 7 C -0.004 4.004 8 C -0.401 4.401 9 S 0.351 5.649 10 C -0.385 4.385 11 C -0.070 4.070 12 C -0.159 4.159 13 C 0.153 3.847 14 C -0.468 4.468 15 H 0.101 0.899 16 C -0.142 4.142 17 N -0.402 5.402 18 Si 0.727 3.273 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.215 4.215 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.100 0.900 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.170 0.830 29 H 0.170 0.830 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.094 0.906 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -1.729 5.804 1.097 6.154 hybrid contribution 0.198 -1.287 -0.565 1.420 sum -1.531 4.516 0.532 4.798 Atomic orbital electron populations 1.22752 0.80815 1.01817 1.00502 1.86008 1.19475 1.29150 1.89800 1.18994 0.92463 0.82431 0.97298 1.20319 0.97266 0.92458 1.23740 1.20309 0.93253 0.95171 0.97241 1.18179 0.91722 0.90180 1.18869 1.17938 0.96602 0.94246 0.91608 1.25220 1.10892 0.99440 1.04512 1.82475 1.48411 1.19318 1.14699 1.25112 1.11385 1.00788 1.01229 1.19123 0.96863 0.93503 0.97536 1.20664 0.99518 1.02996 0.92754 1.17179 0.92666 0.88706 0.86171 1.19444 0.90936 1.02173 1.34228 0.89887 1.25949 1.01159 0.94417 0.92691 1.69851 1.38554 1.10714 1.21043 0.86378 0.81917 0.79841 0.79198 1.19140 1.20182 1.18371 1.20517 0.89362 0.99105 1.12538 0.93749 0.93663 0.89955 0.88679 0.89102 0.82956 0.83036 0.92689 0.93061 0.87676 0.90567 0.85508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -7.22 10.48 -19.42 -0.20 -7.42 16 3 C 0.13 3.16 6.67 -39.24 -0.26 2.90 16 4 C -0.32 -7.06 9.02 -39.24 -0.35 -7.42 16 5 C -0.04 -0.92 9.74 -39.32 -0.38 -1.30 16 6 C -0.19 -4.38 5.02 -104.21 -0.52 -4.90 16 7 C 0.01 0.19 4.26 -106.27 -0.45 -0.26 16 8 C -0.27 -5.10 10.82 29.94 0.32 -4.78 16 9 S 0.09 1.39 23.08 -107.50 -2.48 -1.09 16 10 C -0.25 -4.39 10.95 28.92 0.32 -4.07 16 11 C -0.06 -1.16 5.28 -105.87 -0.56 -1.72 16 12 C -0.10 -1.98 9.65 36.01 0.35 -1.63 16 13 C 0.16 3.96 4.85 -106.57 -0.52 3.45 16 14 C -0.44 -10.96 6.32 -37.97 -0.24 -11.20 16 15 H 0.08 2.10 7.09 -52.49 -0.37 1.73 16 16 C 0.08 1.86 5.14 -17.33 -0.09 1.77 16 17 N -0.78 -19.15 10.97 55.55 0.61 -18.54 16 18 Si 0.90 18.23 29.59 -169.99 -5.03 13.20 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.20 -5.05 8.60 -38.81 -0.33 -5.39 16 23 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 24 H 0.04 0.69 7.64 -51.93 -0.40 0.30 16 25 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 26 H 0.10 1.86 6.25 -52.48 -0.33 1.53 16 27 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 28 H 0.15 2.76 8.06 -52.49 -0.42 2.34 16 29 H 0.15 2.25 8.06 -52.48 -0.42 1.83 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 32 H 0.10 2.42 5.12 -51.93 -0.27 2.15 16 33 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 34 H 0.13 3.44 6.18 -52.49 -0.32 3.12 16 LS Contribution 298.38 15.07 4.50 4.50 Total: -1.00 -26.68 298.38 -8.10 -34.78 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -3.75 Total: 7.54 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: -1.73 Total: -32.97 kcal Atomic # 7 Polarization: -19.15 SS G_CDS: 0.61 Total: -18.54 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.20 Total: -7.42 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.48 Total: -1.09 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.68 -8.10 -34.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.075 kcal (2) G-P(sol) polarization free energy of solvation -26.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds