Wall clock time and date at job start Mon Mar 30 2020 01:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 116.99762 * 2 1 4 4 C 1.39555 * 119.76488 * 359.97261 * 3 2 1 5 5 C 1.37827 * 120.63946 * 179.72245 * 4 3 2 6 6 C 1.39332 * 120.14640 * 0.56033 * 5 4 3 7 7 C 1.47657 * 120.23062 * 179.74310 * 6 5 4 8 8 C 1.36037 * 123.04024 * 64.74708 * 7 6 5 9 9 S 1.70619 * 110.36371 * 179.97438 * 8 7 6 10 10 C 1.75681 * 91.80871 * 359.97438 * 9 8 7 11 11 C 1.33004 * 110.05006 * 0.02562 * 10 9 8 12 12 C 1.50700 * 123.07399 * 180.02562 * 11 10 9 13 13 C 1.41980 * 119.53216 * 359.46769 * 6 5 4 14 14 C 1.40816 * 120.30729 * 180.23121 * 13 6 5 15 15 H 1.07996 * 120.00198 * 24.99886 * 14 13 6 16 16 C 1.39936 * 119.99756 * 204.99423 * 14 13 6 17 17 N 1.30860 * 120.00124 * 17.55431 * 16 14 13 18 18 Si 1.86803 * 119.99966 * 197.55187 * 16 14 13 19 19 H 1.48506 * 109.46820 * 90.00292 * 18 16 14 20 20 H 1.48495 * 109.47177 * 210.00108 * 18 16 14 21 21 H 1.48494 * 109.47204 * 330.00465 * 18 16 14 22 22 C 1.37820 * 119.76520 * 179.97438 * 3 2 1 23 23 H 1.08999 * 109.47701 * 299.99891 * 1 2 3 24 24 H 1.09006 * 109.47077 * 60.00667 * 1 2 3 25 25 H 1.09007 * 109.46845 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.68063 * 359.97438 * 4 3 2 27 27 H 1.07994 * 119.92669 * 180.30003 * 5 4 3 28 28 H 1.08002 * 124.81663 * 359.97438 * 8 7 6 29 29 H 1.08004 * 124.97945 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.46866 * 269.97554 * 12 11 10 31 31 H 1.09006 * 109.47101 * 29.97265 * 12 11 10 32 32 H 1.09003 * 109.47136 * 149.97411 * 12 11 10 33 33 H 0.97002 * 120.00518 * 179.97438 * 17 16 14 34 34 H 1.07996 * 120.08400 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2810 2.3781 -0.0006 5 6 1.8878 3.6156 0.0052 6 6 3.2777 3.7134 -0.0002 7 6 3.9297 5.0382 0.0002 8 6 3.8249 5.9162 1.0341 9 16 4.7025 7.3396 0.6955 10 6 5.2113 6.7205 -0.8679 11 6 4.7113 5.5033 -1.0610 12 6 4.9652 4.6984 -2.3095 13 6 4.0625 2.5303 0.0000 14 6 5.4684 2.6101 -0.0005 15 1 5.9596 3.4871 0.3944 16 6 6.2291 1.5530 -0.5124 17 7 5.6699 0.6608 -1.2895 18 14 8.0427 1.4154 -0.0867 19 1 8.2013 0.6043 1.1471 20 1 8.7656 0.7601 -1.2061 21 1 8.6029 2.7722 0.1375 22 6 3.4225 1.2774 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.2030 2.3111 -0.0014 27 1 1.2847 4.5114 0.0095 28 1 3.2655 5.7375 1.9405 29 1 5.8376 7.2510 -1.5700 30 1 4.1913 4.9160 -3.0457 31 1 5.9405 4.9613 -2.7192 32 1 4.9474 3.6359 -2.0668 33 1 6.1972 -0.0718 -1.6447 34 1 4.0083 0.3702 0.0005 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241729903.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:35 Heat of formation + Delta-G solvation = -10.588191 kcal Electronic energy + Delta-G solvation = -18678.264250 eV Core-core repulsion = 15859.843935 eV Total energy + Delta-G solvation = -2818.420314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.61146 -39.41180 -37.37256 -35.41032 -32.05381 -31.59498 -30.58154 -28.40580 -27.28472 -26.97337 -24.15776 -22.73486 -21.84963 -19.53321 -18.99521 -18.26469 -17.91951 -16.85142 -16.40527 -16.33472 -16.29655 -15.06085 -14.82530 -14.60720 -14.27208 -14.01068 -13.81387 -13.58732 -13.25130 -12.98629 -12.87264 -12.77210 -12.66223 -12.55645 -12.45489 -12.04499 -11.79470 -11.53020 -11.42852 -11.29886 -10.93601 -9.44045 -9.36188 -9.01044 -8.72468 -8.36755 -6.30857 0.25991 0.95251 1.01966 1.06391 1.33090 1.38498 1.49953 1.52632 2.02308 2.20250 2.71816 2.80334 3.71060 4.24157 4.28470 4.40309 4.46697 4.51714 4.55638 4.68762 4.74300 4.76156 4.88936 4.95148 5.08095 5.14889 5.28789 5.34401 5.47559 5.57098 5.70314 5.90897 5.95206 5.99847 6.17943 6.21585 6.52192 6.92968 6.96529 7.08265 8.31713 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.008892 C = 0.005778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.553190 B = 3148.088659 C = 4845.080670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.352 6.352 3 C 0.126 3.874 4 C -0.317 4.317 5 C -0.049 4.049 6 C -0.190 4.190 7 C -0.023 4.023 8 C -0.279 4.279 9 S 0.166 5.834 10 C -0.246 4.246 11 C -0.089 4.089 12 C -0.094 4.094 13 C 0.135 3.865 14 C -0.454 4.454 15 H 0.073 0.927 16 C 0.043 3.957 17 N -0.809 5.809 18 Si 0.965 3.035 19 H -0.266 1.266 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.231 4.231 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.113 0.887 28 H 0.158 0.842 29 H 0.181 0.819 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.288 0.712 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 6.731 0.752 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.267 6.267 3 C 0.082 3.918 4 C -0.336 4.336 5 C -0.068 4.068 6 C -0.193 4.193 7 C -0.036 4.036 8 C -0.415 4.415 9 S 0.432 5.568 10 C -0.381 4.381 11 C -0.101 4.101 12 C -0.153 4.153 13 C 0.132 3.868 14 C -0.482 4.482 15 H 0.091 0.909 16 C -0.174 4.174 17 N -0.433 5.433 18 Si 0.787 3.213 19 H -0.191 1.191 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.251 4.251 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.134 0.866 26 H 0.142 0.858 27 H 0.131 0.869 28 H 0.175 0.825 29 H 0.199 0.801 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.779 7.725 1.414 8.052 hybrid contribution 0.075 -1.803 -0.630 1.911 sum -1.704 5.922 0.784 6.212 Atomic orbital electron populations 1.23129 0.77709 1.04462 1.01422 1.85971 1.22714 1.28423 1.89578 1.19100 0.92221 0.83788 0.96681 1.20612 0.98632 0.91770 1.22631 1.20640 0.93254 0.96134 0.96761 1.18480 0.92353 0.90943 1.17562 1.17994 0.98391 0.93977 0.93281 1.25452 1.11057 1.00836 1.04165 1.82170 1.45839 1.16115 1.12630 1.25524 1.10164 0.99949 1.02423 1.19119 0.98499 0.94868 0.97589 1.20526 1.00751 1.00703 0.93325 1.17453 0.93379 0.89318 0.86655 1.19417 0.91134 1.02473 1.35192 0.90865 1.26636 1.04892 0.93772 0.92096 1.69915 1.40151 1.11372 1.21901 0.85439 0.77132 0.79728 0.79034 1.19083 1.19075 1.18153 1.20476 0.90520 0.98628 1.15478 0.92539 0.92842 0.86635 0.85823 0.86866 0.82454 0.80146 0.92113 0.91333 0.91490 0.90104 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.80 113.37 1.11 1.95 16 2 O -0.35 -15.55 10.48 -92.42 -0.97 -16.52 16 3 C 0.13 6.20 6.67 22.49 0.15 6.35 16 4 C -0.32 -13.96 9.02 22.49 0.20 -13.76 16 5 C -0.05 -2.19 9.74 22.44 0.22 -1.98 16 6 C -0.19 -9.12 5.02 -19.60 -0.10 -9.22 16 7 C -0.02 -0.98 4.26 -20.93 -0.09 -1.07 16 8 C -0.28 -10.31 10.82 67.31 0.73 -9.58 16 9 S 0.17 4.87 23.08 -56.49 -1.30 3.57 16 10 C -0.25 -7.92 10.95 66.65 0.73 -7.19 16 11 C -0.09 -3.49 5.28 -20.66 -0.11 -3.60 16 12 C -0.09 -3.73 9.65 71.24 0.69 -3.04 16 13 C 0.14 7.16 4.85 -21.12 -0.10 7.06 16 14 C -0.45 -23.56 6.32 23.31 0.15 -23.41 16 15 H 0.07 3.83 7.09 -2.91 -0.02 3.81 16 16 C 0.04 2.12 5.14 85.25 0.44 2.56 16 17 N -0.81 -41.71 10.97 21.83 0.24 -41.47 16 18 Si 0.97 38.07 29.59 68.60 2.03 40.11 16 19 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.23 -12.57 8.60 22.77 0.20 -12.38 16 23 H 0.06 1.59 7.65 -2.39 -0.02 1.57 16 24 H 0.05 1.54 7.64 -2.38 -0.02 1.52 16 25 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 26 H 0.12 4.61 6.25 -2.91 -0.02 4.59 16 27 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 28 H 0.16 5.49 8.06 -2.91 -0.02 5.47 16 29 H 0.18 4.65 8.06 -2.91 -0.02 4.62 16 30 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.07 2.37 8.13 -2.38 -0.02 2.35 16 32 H 0.07 3.21 5.12 -2.39 -0.01 3.19 16 33 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 34 H 0.10 5.94 6.18 -2.91 -0.02 5.92 16 Total: -1.00 -59.96 298.38 5.33 -54.64 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 1.12 Total: 26.98 kcal Atomic # 6 Polarization: -71.52 SS G_CDS: 4.21 Total: -67.31 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.24 Total: -41.47 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.97 Total: -16.52 kcal Atomic # 14 Polarization: 38.07 SS G_CDS: 2.03 Total: 40.11 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.30 Total: 3.57 kcal Total: -59.96 5.33 -54.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729903.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.048 kcal (2) G-P(sol) polarization free energy of solvation -59.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds