Wall clock time and date at job start Mon Mar 30 2020 01:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35695 * 116.99915 * 2 1 4 4 C 1.37861 * 120.19022 * 0.27991 * 3 2 1 5 5 C 1.39744 * 119.92920 * 180.30124 * 4 3 2 6 6 C 1.47852 * 119.84641 * 179.69535 * 5 4 3 7 7 C 1.34869 * 122.90650 * 309.68295 * 6 5 4 8 8 S 1.70631 * 110.48211 * 179.97438 * 7 6 5 9 9 C 1.75721 * 91.72670 * 0.29305 * 8 7 6 10 10 C 1.33083 * 109.83847 * 359.83362 * 9 8 7 11 11 C 1.50698 * 123.11796 * 179.97438 * 10 9 8 12 12 C 1.40169 * 120.30420 * 359.66818 * 5 4 3 13 13 C 1.36071 * 120.37628 * 0.02562 * 12 5 4 14 14 C 1.40932 * 120.06312 * 0.02562 * 13 12 5 15 15 C 1.40826 * 120.15033 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99649 * 154.54686 * 15 14 13 17 17 C 1.39884 * 119.99728 * 334.55237 * 15 14 13 18 18 N 1.30906 * 120.00384 * 334.49852 * 17 15 14 19 19 Si 1.86805 * 119.99978 * 154.50646 * 17 15 14 20 20 H 1.48491 * 109.47274 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.46721 * 299.99910 * 19 17 15 22 22 H 1.48499 * 109.47075 * 59.99216 * 19 17 15 23 23 H 1.09004 * 109.47027 * 300.00082 * 1 2 3 24 24 H 1.08997 * 109.46812 * 59.99816 * 1 2 3 25 25 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.03406 * 359.97438 * 4 3 2 27 27 H 1.08002 * 124.76087 * 0.03166 * 7 6 5 28 28 H 1.07999 * 125.07872 * 179.83601 * 9 8 7 29 29 H 1.09006 * 109.47093 * 270.02133 * 11 10 9 30 30 H 1.08998 * 109.47439 * 30.01984 * 11 10 9 31 31 H 1.08995 * 109.47205 * 150.02163 * 11 10 9 32 32 H 1.08000 * 119.81547 * 180.02562 * 12 5 4 33 33 H 1.08003 * 119.96690 * 180.02562 * 13 12 5 34 34 H 0.97007 * 120.00048 * 354.16005 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2981 2.3677 0.0058 5 6 1.9381 3.6100 -0.0006 6 6 1.1351 4.8514 -0.0011 7 6 0.1266 5.0713 -0.8692 8 16 -0.5809 6.5984 -0.5880 9 6 0.5329 6.9310 0.7298 10 6 1.3601 5.9012 0.8927 11 6 2.4397 5.8707 1.9437 12 6 3.3378 3.6844 -0.0059 13 6 4.0873 2.5487 -0.0054 14 6 3.4581 1.2876 -0.0001 15 6 4.2320 0.1111 -0.0001 16 1 3.8246 -0.8031 0.4055 17 6 5.5283 0.1267 -0.5255 18 7 5.8563 1.0113 -1.4329 19 14 6.7915 -1.1151 0.0678 20 1 8.0776 -0.8893 -0.6393 21 1 6.9950 -0.9542 1.5299 22 1 6.3058 -2.4894 -0.2160 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2193 2.3154 0.0100 27 1 -0.1896 4.3777 -1.6343 28 1 0.5445 7.8358 1.3193 29 1 3.3590 6.2879 1.5324 30 1 2.1259 6.4613 2.8043 31 1 2.6153 4.8408 2.2544 32 1 3.8242 4.6487 -0.0104 33 1 5.1653 2.6138 -0.0091 34 1 5.1801 1.6004 -1.8028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241729995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:39 Heat of formation + Delta-G solvation = -2.288456 kcal Electronic energy + Delta-G solvation = -18341.986132 eV Core-core repulsion = 15523.925721 eV Total energy + Delta-G solvation = -2818.060411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.11398 -37.95285 -36.06705 -33.82431 -30.97135 -29.65028 -28.76124 -27.14523 -26.47585 -25.01265 -22.58620 -20.83654 -20.59785 -18.21187 -17.98547 -17.25693 -15.96915 -15.25789 -14.78801 -14.68773 -14.38345 -13.97007 -13.65044 -13.02468 -12.99482 -12.66009 -12.59038 -12.09480 -12.01554 -11.70100 -11.55334 -11.29964 -11.14589 -11.00258 -10.66635 -10.46419 -10.39910 -10.08624 -9.94209 -9.49859 -9.03172 -8.40753 -8.08932 -7.48646 -7.36920 -7.01004 -4.36221 1.37360 2.05999 2.36095 2.50854 2.84480 3.11250 3.15672 3.34721 3.40913 3.98642 4.40740 4.49965 5.23439 5.39579 5.41821 5.68154 5.74050 5.74621 5.83630 5.88535 5.94172 5.96429 6.06652 6.22371 6.35853 6.48756 6.69643 6.78597 6.98294 6.99162 7.14221 7.41134 7.57856 7.72113 7.88178 8.01578 8.15391 8.31819 8.75216 8.89804 9.97466 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.005195 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.206361 B = 5388.715016 C = 6117.325558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.005 3.995 4 C -0.142 4.142 5 C -0.164 4.164 6 C -0.010 4.010 7 C -0.263 4.263 8 S 0.101 5.899 9 C -0.240 4.240 10 C -0.084 4.084 11 C -0.091 4.091 12 C -0.073 4.073 13 C -0.211 4.211 14 C 0.092 3.908 15 C -0.491 4.491 16 H 0.083 0.917 17 C 0.036 3.964 18 N -0.789 5.789 19 Si 1.066 2.934 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.275 1.275 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.155 0.845 28 H 0.156 0.844 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.091 6.025 2.880 9.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.039 4.039 4 C -0.162 4.162 5 C -0.167 4.167 6 C -0.022 4.022 7 C -0.399 4.399 8 S 0.368 5.632 9 C -0.375 4.375 10 C -0.097 4.097 11 C -0.150 4.150 12 C -0.092 4.092 13 C -0.231 4.231 14 C 0.088 3.912 15 C -0.518 4.518 16 H 0.101 0.899 17 C -0.186 4.186 18 N -0.412 5.412 19 Si 0.889 3.111 20 H -0.198 1.198 21 H -0.199 1.199 22 H -0.200 1.200 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.172 0.828 28 H 0.174 0.826 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.625 6.242 1.979 9.315 hybrid contribution -0.930 -0.121 0.642 1.137 sum -7.555 6.120 2.621 10.070 Atomic orbital electron populations 1.22733 0.81647 1.01810 0.99925 1.85973 1.18248 1.28037 1.90401 1.18952 0.92114 0.82672 1.10179 1.20624 0.97194 0.91832 1.06528 1.17329 0.91783 0.89166 1.18447 1.17861 0.95423 0.94938 0.93987 1.24931 1.05331 1.02284 1.07332 1.82642 1.36154 1.12999 1.31443 1.25215 1.03193 1.03789 1.05316 1.19140 0.98558 0.93375 0.98593 1.20515 0.95733 1.03389 0.95413 1.20297 0.92259 0.96904 0.99717 1.20567 0.98817 0.91198 1.12518 1.17158 0.88060 0.93770 0.92218 1.20477 0.99500 0.97409 1.34420 0.89935 1.27106 0.99104 0.99314 0.93120 1.70486 1.39985 1.14262 1.16449 0.83621 0.75279 0.74965 0.77211 1.19806 1.19875 1.20015 0.94219 0.94221 0.89913 0.88471 0.82756 0.82630 0.91454 0.92410 0.90494 0.88959 0.86951 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.60 16 2 O -0.31 -7.24 9.78 -18.79 -0.18 -7.42 16 3 C 0.00 0.12 6.71 -38.47 -0.26 -0.14 16 4 C -0.14 -3.19 8.56 -39.16 -0.34 -3.53 16 5 C -0.16 -3.58 5.07 -104.68 -0.53 -4.11 16 6 C -0.01 -0.19 5.35 -106.61 -0.57 -0.76 16 7 C -0.26 -4.57 10.57 29.54 0.31 -4.25 16 8 S 0.10 1.44 23.09 -107.50 -2.48 -1.04 16 9 C -0.24 -3.51 10.97 28.94 0.32 -3.19 16 10 C -0.08 -1.41 5.82 -105.87 -0.62 -2.03 16 11 C -0.09 -1.39 8.80 36.00 0.32 -1.07 16 12 C -0.07 -1.64 8.27 -39.64 -0.33 -1.97 16 13 C -0.21 -5.25 7.87 -39.34 -0.31 -5.56 16 14 C 0.09 2.40 5.31 -106.65 -0.57 1.84 16 15 C -0.49 -12.99 8.62 -37.99 -0.33 -13.32 16 16 H 0.08 2.19 7.71 -52.49 -0.40 1.79 16 17 C 0.04 0.90 4.92 -17.33 -0.09 0.81 16 18 N -0.79 -20.55 12.31 55.55 0.68 -19.86 16 19 Si 1.07 21.24 30.00 -169.99 -5.10 16.14 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H 0.04 0.64 7.65 -51.93 -0.40 0.25 16 24 H 0.04 0.65 7.67 -51.93 -0.40 0.25 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.10 1.98 6.29 -52.48 -0.33 1.65 16 27 H 0.15 2.59 8.06 -52.49 -0.42 2.17 16 28 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 29 H 0.07 0.97 7.91 -51.93 -0.41 0.56 16 30 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 31 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 32 H 0.09 1.91 7.34 -52.49 -0.38 1.52 16 33 H 0.11 2.85 6.47 -52.48 -0.34 2.52 16 34 H 0.30 8.06 6.69 -40.82 -0.27 7.79 16 LS Contribution 300.31 15.07 4.53 4.53 Total: -1.00 -27.78 300.31 -8.34 -36.12 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.79 Total: 7.23 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: -1.99 Total: -35.68 kcal Atomic # 7 Polarization: -20.55 SS G_CDS: 0.68 Total: -19.86 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.18 Total: -7.42 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.10 Total: 16.14 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -27.78 -8.34 -36.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.827 kcal (2) G-P(sol) polarization free energy of solvation -27.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds