Wall clock time and date at job start Mon Mar 30 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35695 * 116.99915 * 2 1 4 4 C 1.37861 * 120.19022 * 0.27991 * 3 2 1 5 5 C 1.39744 * 119.92920 * 180.30124 * 4 3 2 6 6 C 1.47852 * 119.84641 * 179.69535 * 5 4 3 7 7 C 1.34869 * 122.90650 * 309.68295 * 6 5 4 8 8 S 1.70631 * 110.48211 * 179.97438 * 7 6 5 9 9 C 1.75721 * 91.72670 * 0.29305 * 8 7 6 10 10 C 1.33083 * 109.83847 * 359.83362 * 9 8 7 11 11 C 1.50698 * 123.11796 * 179.97438 * 10 9 8 12 12 C 1.40169 * 120.30420 * 359.66818 * 5 4 3 13 13 C 1.36071 * 120.37628 * 0.02562 * 12 5 4 14 14 C 1.40932 * 120.06312 * 0.02562 * 13 12 5 15 15 C 1.40826 * 120.15033 * 179.97438 * 14 13 12 16 16 H 1.07992 * 119.99649 * 154.54686 * 15 14 13 17 17 C 1.39884 * 119.99728 * 334.55237 * 15 14 13 18 18 N 1.30906 * 120.00384 * 334.49852 * 17 15 14 19 19 Si 1.86805 * 119.99978 * 154.50646 * 17 15 14 20 20 H 1.48491 * 109.47274 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.46721 * 299.99910 * 19 17 15 22 22 H 1.48499 * 109.47075 * 59.99216 * 19 17 15 23 23 H 1.09004 * 109.47027 * 300.00082 * 1 2 3 24 24 H 1.08997 * 109.46812 * 59.99816 * 1 2 3 25 25 H 1.08997 * 109.47124 * 180.02562 * 1 2 3 26 26 H 1.08004 * 120.03406 * 359.97438 * 4 3 2 27 27 H 1.08002 * 124.76087 * 0.03166 * 7 6 5 28 28 H 1.07999 * 125.07872 * 179.83601 * 9 8 7 29 29 H 1.09006 * 109.47093 * 270.02133 * 11 10 9 30 30 H 1.08998 * 109.47439 * 30.01984 * 11 10 9 31 31 H 1.08995 * 109.47205 * 150.02163 * 11 10 9 32 32 H 1.08000 * 119.81547 * 180.02562 * 12 5 4 33 33 H 1.08003 * 119.96690 * 180.02562 * 13 12 5 34 34 H 0.97007 * 120.00048 * 354.16005 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2981 2.3677 0.0058 5 6 1.9381 3.6100 -0.0006 6 6 1.1351 4.8514 -0.0011 7 6 0.1266 5.0713 -0.8692 8 16 -0.5809 6.5984 -0.5880 9 6 0.5329 6.9310 0.7298 10 6 1.3601 5.9012 0.8927 11 6 2.4397 5.8707 1.9437 12 6 3.3378 3.6844 -0.0059 13 6 4.0873 2.5487 -0.0054 14 6 3.4581 1.2876 -0.0001 15 6 4.2320 0.1111 -0.0001 16 1 3.8246 -0.8031 0.4055 17 6 5.5283 0.1267 -0.5255 18 7 5.8563 1.0113 -1.4329 19 14 6.7915 -1.1151 0.0678 20 1 8.0776 -0.8893 -0.6393 21 1 6.9950 -0.9542 1.5299 22 1 6.3058 -2.4894 -0.2160 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2193 2.3154 0.0100 27 1 -0.1896 4.3777 -1.6343 28 1 0.5445 7.8358 1.3193 29 1 3.3590 6.2879 1.5324 30 1 2.1259 6.4613 2.8043 31 1 2.6153 4.8408 2.2544 32 1 3.8242 4.6487 -0.0104 33 1 5.1653 2.6138 -0.0091 34 1 5.1801 1.6004 -1.8028 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241729995.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:38 Heat of formation + Delta-G solvation = -16.134198 kcal Electronic energy + Delta-G solvation = -18342.586528 eV Core-core repulsion = 15523.925721 eV Total energy + Delta-G solvation = -2818.660807 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 274.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.81294 -39.42118 -37.81245 -35.61249 -32.43631 -31.32769 -30.50668 -28.51901 -28.02620 -26.66638 -24.13549 -22.57736 -22.27125 -20.00897 -19.51815 -18.52088 -17.51999 -16.95242 -16.55762 -16.35809 -15.88064 -15.51044 -15.05244 -14.67909 -14.58783 -14.19370 -13.91617 -13.66459 -13.54425 -13.13029 -12.98034 -12.82036 -12.67694 -12.51979 -12.18400 -11.95400 -11.91013 -11.70246 -11.65658 -11.25528 -10.86378 -9.86299 -9.49713 -9.33891 -9.03879 -8.76805 -6.31283 0.05856 0.72229 0.87001 0.95860 1.17048 1.51243 1.58160 1.81096 1.89251 2.33837 2.66984 2.79438 3.47540 4.06456 4.09594 4.20087 4.35083 4.37835 4.39134 4.49550 4.55878 4.64614 4.69990 4.81812 4.85330 5.02954 5.09537 5.20678 5.25340 5.46321 5.49894 5.66675 5.78078 5.80401 6.01064 6.13027 6.29271 6.47167 6.86023 7.08145 8.02530 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.005195 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.206361 B = 5388.715016 C = 6117.325558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.339 6.339 3 C -0.005 4.005 4 C -0.150 4.150 5 C -0.140 4.140 6 C -0.046 4.046 7 C -0.275 4.275 8 S 0.178 5.822 9 C -0.230 4.230 10 C -0.110 4.110 11 C -0.088 4.088 12 C -0.082 4.082 13 C -0.217 4.217 14 C 0.056 3.944 15 C -0.532 4.532 16 H 0.068 0.932 17 C 0.004 3.996 18 N -0.814 5.814 19 Si 1.116 2.884 20 H -0.268 1.268 21 H -0.263 1.263 22 H -0.261 1.261 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.155 0.845 28 H 0.191 0.809 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.110 8.053 3.441 12.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.254 6.254 3 C -0.049 4.049 4 C -0.169 4.169 5 C -0.143 4.143 6 C -0.059 4.059 7 C -0.411 4.411 8 S 0.445 5.555 9 C -0.365 4.365 10 C -0.122 4.122 11 C -0.148 4.148 12 C -0.101 4.101 13 C -0.237 4.237 14 C 0.053 3.947 15 C -0.560 4.560 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.437 5.437 19 Si 0.933 3.067 20 H -0.193 1.193 21 H -0.187 1.187 22 H -0.185 1.185 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.137 0.863 27 H 0.172 0.828 28 H 0.208 0.792 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.127 0.873 33 H 0.116 0.884 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.682 8.284 2.541 12.266 hybrid contribution -0.684 -0.480 0.448 0.948 sum -9.366 7.804 2.990 12.552 Atomic orbital electron populations 1.23076 0.78616 1.04311 1.00768 1.85923 1.21452 1.27698 1.90345 1.19154 0.92059 0.83935 1.09799 1.20893 0.98282 0.91420 1.06317 1.17741 0.91835 0.90622 1.14098 1.17890 0.96700 0.94849 0.96493 1.25170 1.04710 1.04512 1.06716 1.82441 1.33960 1.09359 1.29695 1.25669 1.01753 1.04025 1.05049 1.19186 1.00142 0.93581 0.99265 1.20488 0.95838 1.02209 0.96220 1.20469 0.92904 0.96830 0.99889 1.20540 0.98352 0.91840 1.12943 1.17511 0.89414 0.94308 0.93497 1.20496 1.01078 0.97198 1.37263 0.91404 1.28437 1.00579 1.00173 0.92028 1.70604 1.39196 1.15800 1.18101 0.83020 0.73083 0.73323 0.77257 1.19276 1.18725 1.18542 0.93155 0.93328 0.86764 0.86267 0.82759 0.79232 0.91101 0.89583 0.93251 0.87303 0.88449 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.81 113.37 1.11 2.02 16 2 O -0.34 -16.08 9.78 -90.15 -0.88 -16.96 16 3 C -0.01 -0.26 6.71 22.99 0.15 -0.11 16 4 C -0.15 -6.74 8.56 22.54 0.19 -6.55 16 5 C -0.14 -6.09 5.07 -19.90 -0.10 -6.19 16 6 C -0.05 -1.68 5.35 -21.15 -0.11 -1.79 16 7 C -0.28 -8.80 10.57 67.05 0.71 -8.09 16 8 S 0.18 4.26 23.09 -56.49 -1.30 2.95 16 9 C -0.23 -5.67 10.97 66.66 0.73 -4.94 16 10 C -0.11 -3.40 5.82 -20.67 -0.12 -3.52 16 11 C -0.09 -2.52 8.80 71.24 0.63 -1.90 16 12 C -0.08 -3.80 8.27 22.23 0.18 -3.61 16 13 C -0.22 -11.36 7.87 22.43 0.18 -11.19 16 14 C 0.06 3.09 5.31 -21.18 -0.11 2.98 16 15 C -0.53 -29.90 8.62 23.30 0.20 -29.70 16 16 H 0.07 3.85 7.71 -2.91 -0.02 3.83 16 17 C 0.00 0.20 4.92 85.23 0.42 0.61 16 18 N -0.81 -44.71 12.31 21.82 0.27 -44.44 16 19 Si 1.12 44.21 30.00 68.60 2.06 46.27 16 20 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 23 H 0.05 1.56 7.65 -2.38 -0.02 1.54 16 24 H 0.05 1.52 7.67 -2.39 -0.02 1.51 16 25 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 26 H 0.12 4.73 6.29 -2.91 -0.02 4.71 16 27 H 0.15 4.84 8.06 -2.91 -0.02 4.82 16 28 H 0.19 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.07 1.92 7.91 -2.38 -0.02 1.90 16 30 H 0.09 1.91 8.13 -2.39 -0.02 1.89 16 31 H 0.05 1.66 7.05 -2.39 -0.02 1.64 16 32 H 0.11 4.57 7.34 -2.91 -0.02 4.55 16 33 H 0.10 5.29 6.47 -2.91 -0.02 5.27 16 34 H 0.28 16.23 6.69 -92.70 -0.62 15.61 16 Total: -1.00 -63.60 300.31 5.46 -58.14 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 1.26 Total: 26.01 kcal Atomic # 6 Polarization: -76.03 SS G_CDS: 4.06 Total: -71.97 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.27 Total: -44.44 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.88 Total: -16.96 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.06 Total: 46.27 kcal Atomic # 16 Polarization: 4.26 SS G_CDS: -1.30 Total: 2.95 kcal Total: -63.60 5.46 -58.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241729995.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.003 kcal (2) G-P(sol) polarization free energy of solvation -63.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds