Wall clock time and date at job start Mon Mar 30 2020 01:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.34747 * 126.44698 * 2 1 4 4 C 1.33967 * 107.76135 * 179.97438 * 3 2 1 5 5 N 1.30260 * 108.75886 * 0.02562 * 4 3 2 6 6 C 1.34330 * 126.44088 * 179.97438 * 2 1 3 7 7 C 1.50696 * 126.17007 * 0.02562 * 6 2 1 8 8 N 1.46501 * 109.46911 * 270.02664 * 7 6 2 9 9 S 1.65601 * 120.00182 * 164.99946 * 8 7 6 10 10 O 1.42096 * 104.27930 * 181.07137 * 9 8 7 11 11 O 1.42102 * 104.27414 * 308.92681 * 9 8 7 12 12 C 1.81394 * 104.45194 * 64.99708 * 9 8 7 13 13 C 1.53005 * 109.47356 * 180.02562 * 12 9 8 14 14 C 1.50706 * 109.46992 * 180.02562 * 13 12 9 15 15 H 1.07995 * 119.99804 * 359.97438 * 14 13 12 16 16 C 1.37869 * 119.99569 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00555 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99931 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47350 * 90.00075 * 18 16 14 20 20 H 1.48498 * 109.47336 * 210.00083 * 18 16 14 21 21 H 1.48504 * 109.46989 * 329.99856 * 18 16 14 22 22 H 1.08999 * 109.46700 * 270.01320 * 1 2 3 23 23 H 1.08990 * 109.47109 * 30.01391 * 1 2 3 24 24 H 1.09001 * 109.47371 * 150.01905 * 1 2 3 25 25 H 1.07997 * 125.62305 * 180.02562 * 4 3 2 26 26 H 1.09001 * 109.47525 * 30.02021 * 7 6 2 27 27 H 1.08999 * 109.47609 * 150.02734 * 7 6 2 28 28 H 0.96997 * 120.00483 * 344.99550 * 8 7 6 29 29 H 1.09000 * 109.47267 * 300.00167 * 12 9 8 30 30 H 1.08999 * 109.47065 * 60.00307 * 12 9 8 31 31 H 1.09000 * 109.46839 * 300.00147 * 13 12 9 32 32 H 1.08999 * 109.47012 * 59.99994 * 13 12 9 33 33 H 0.96993 * 120.00455 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3075 1.0839 0.0000 4 6 3.5766 0.6547 0.0006 5 7 3.5783 -0.6479 0.0004 6 6 2.3050 -1.0806 0.0005 7 6 1.8546 -2.5187 0.0006 8 7 1.7075 -2.9843 1.3819 9 16 0.8803 -4.3830 1.7006 10 8 0.9209 -4.4993 3.1163 11 8 -0.3536 -4.2246 1.0137 12 6 1.8774 -5.6853 0.9260 13 6 1.2089 -7.0427 1.1532 14 6 2.0378 -8.1247 0.5101 15 1 2.9498 -7.8696 -0.0090 16 6 1.6317 -9.4401 0.5846 17 7 0.5208 -9.7507 1.2164 18 14 2.6593 -10.7814 -0.2118 19 1 3.6520 -11.2919 0.7677 20 1 1.7740 -11.8925 -0.6440 21 1 3.3690 -10.2261 -1.3922 22 1 -0.3633 0.0002 1.0277 23 1 -0.3633 0.8898 -0.5140 24 1 -0.3634 -0.8901 -0.5135 25 1 4.4537 1.2848 0.0011 26 1 0.8970 -2.5997 -0.5139 27 1 2.5957 -3.1317 -0.5124 28 1 2.0948 -2.4733 2.1097 29 1 1.9566 -5.4942 -0.1442 30 1 2.8735 -5.6919 1.3686 31 1 1.1294 -7.2339 2.2233 32 1 0.2130 -7.0358 0.7104 33 1 0.2349 -10.6760 1.2684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253762700.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:13 Heat of formation + Delta-G solvation = -92.041374 kcal Electronic energy + Delta-G solvation = -18812.612692 eV Core-core repulsion = 15579.811040 eV Total energy + Delta-G solvation = -3232.801652 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -44.34754 -38.18801 -37.24438 -36.96661 -35.87546 -35.12046 -33.23609 -33.10222 -28.74359 -27.57423 -26.49005 -23.58469 -23.23109 -21.91687 -20.36222 -19.15520 -18.61422 -18.03944 -17.63310 -17.14863 -17.03532 -16.51201 -16.10853 -15.93120 -15.22064 -14.96003 -14.48280 -14.20753 -13.98538 -13.86214 -13.68863 -13.28670 -13.19629 -13.10376 -12.94290 -12.90717 -12.77155 -12.24561 -12.22060 -12.12301 -11.72867 -11.53752 -11.19461 -10.63042 -10.43702 -9.73145 -8.24604 -6.38252 -0.70379 0.45326 1.42160 1.43649 1.48848 1.54856 1.83147 2.03190 2.39391 2.79779 3.08939 3.14276 3.34122 3.69277 3.79593 4.01378 4.13751 4.24544 4.30929 4.56687 4.61832 4.71653 4.80113 4.81490 5.02936 5.17002 5.29713 5.31191 5.33521 5.70332 5.98454 6.08615 6.72015 6.75402 7.31868 8.87608 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.031046 B = 0.004004 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.673369 B = 6990.659049 C = 7462.704573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.021 4.021 3 O -0.209 6.209 4 C 0.180 3.820 5 N -0.511 5.511 6 C -0.049 4.049 7 C 0.192 3.808 8 N -1.106 6.106 9 S 2.627 3.373 10 O -0.998 6.998 11 O -0.987 6.987 12 C -0.591 4.591 13 C 0.019 3.981 14 C -0.540 4.540 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.258 1.258 22 H 0.092 0.908 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.295 0.705 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.421 0.579 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.006 0.994 32 H 0.012 0.988 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 22.432 -4.617 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 O -0.096 6.096 4 C -0.046 4.046 5 N -0.239 5.239 6 C -0.169 4.169 7 C 0.066 3.934 8 N -0.866 5.866 9 S 2.724 3.276 10 O -0.988 6.988 11 O -0.977 6.977 12 C -0.723 4.723 13 C -0.020 4.020 14 C -0.578 4.578 15 H 0.093 0.907 16 C -0.201 4.201 17 N -0.573 5.573 18 Si 0.796 3.204 19 H -0.198 1.198 20 H -0.208 1.208 21 H -0.182 1.182 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.119 0.881 25 H 0.309 0.691 26 H 0.123 0.877 27 H 0.110 0.890 28 H 0.256 0.744 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.025 0.975 32 H 0.030 0.970 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.223 21.817 -4.242 22.623 hybrid contribution 0.565 -0.476 -0.102 0.746 sum 4.787 21.340 -4.344 22.298 Atomic orbital electron populations 1.20550 0.82189 1.05827 1.04982 1.23728 0.96041 0.83878 1.03932 1.84478 1.18971 1.36289 1.69832 1.29045 0.86228 0.90771 0.98593 1.70327 1.22870 1.11969 1.18727 1.21285 0.88804 0.96639 1.10176 1.19626 1.02649 0.88833 0.82280 1.55396 1.75414 1.41386 1.14425 1.04319 0.74996 0.74807 0.73519 1.93509 1.87551 1.86569 1.31189 1.93500 1.42472 1.85354 1.76366 1.30364 1.14754 1.12635 1.14514 1.18839 0.95891 0.90467 0.96768 1.21527 1.09069 0.91913 1.35339 0.90742 1.26084 0.96406 1.01774 0.95841 1.70092 1.24051 1.19625 1.43556 0.85332 0.78216 0.77822 0.79000 1.19756 1.20773 1.18206 0.88941 0.88243 0.88118 0.69057 0.87713 0.88974 0.74362 0.83763 0.84242 0.97534 0.97006 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 10.22 71.24 0.73 -0.38 16 2 C -0.02 -0.39 7.39 24.79 0.18 -0.21 16 3 O -0.21 -3.58 10.77 -3.68 -0.04 -3.62 16 4 C 0.18 2.61 13.23 130.48 1.73 4.34 16 5 N -0.51 -11.13 11.30 -304.07 -3.43 -14.56 16 6 C -0.05 -1.09 6.50 41.26 0.27 -0.82 16 7 C 0.19 4.31 6.46 85.63 0.55 4.87 16 8 N -1.11 -28.06 5.88 -190.79 -1.12 -29.18 16 9 S 2.63 90.88 5.46 -56.49 -0.31 90.57 16 10 O -1.00 -41.37 18.08 -127.65 -2.31 -43.68 16 11 O -0.99 -38.53 17.50 -127.65 -2.23 -40.76 16 12 C -0.59 -22.05 6.01 71.98 0.43 -21.61 16 13 C 0.02 1.00 4.98 29.85 0.15 1.15 16 14 C -0.54 -29.90 9.11 25.60 0.23 -29.66 16 15 H 0.07 3.82 7.74 -2.91 -0.02 3.80 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.93 -56.68 13.29 21.44 0.28 -56.39 16 18 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 22 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.10 1.40 7.17 -2.39 -0.02 1.38 16 25 H 0.29 0.88 8.06 -2.91 -0.02 0.86 16 26 H 0.10 2.14 6.72 -2.39 -0.02 2.13 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.42 9.80 8.61 -96.75 -0.83 8.96 16 29 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 30 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 31 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.01 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.15 306.08 -2.10 -81.24 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.30 Total: 13.03 kcal Atomic # 6 Polarization: -46.76 SS G_CDS: 4.74 Total: -42.02 kcal Atomic # 7 Polarization: -95.86 SS G_CDS: -4.27 Total: -100.13 kcal Atomic # 8 Polarization: -83.48 SS G_CDS: -4.58 Total: -88.06 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 90.88 SS G_CDS: -0.31 Total: 90.57 kcal Total: -79.15 -2.10 -81.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253762700.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.800 kcal (2) G-P(sol) polarization free energy of solvation -79.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds