Wall clock time and date at job start Mon Mar 30 2020 01:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47535 * 2 1 4 4 C 1.50702 * 109.47132 * 180.02562 * 3 2 1 5 5 N 1.31129 * 126.55254 * 90.25481 * 4 3 2 6 6 C 1.34489 * 105.61416 * 180.11760 * 5 4 3 7 7 C 1.50702 * 126.28571 * 179.89990 * 6 5 4 8 8 S 1.81399 * 109.47410 * 269.71811 * 7 6 5 9 9 O 1.42098 * 108.57930 * 294.48552 * 8 7 6 10 10 O 1.42100 * 108.57478 * 65.51668 * 8 7 6 11 11 C 1.81404 * 101.91985 * 179.97438 * 8 7 6 12 12 C 1.50703 * 109.46895 * 179.97438 * 11 8 7 13 13 H 1.08004 * 120.00022 * 0.02562 * 12 11 8 14 14 C 1.37871 * 119.99968 * 179.97438 * 12 11 8 15 15 N 1.31519 * 120.00061 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 120.00019 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46912 * 89.99823 * 16 14 12 18 18 H 1.48499 * 109.47157 * 209.99997 * 16 14 12 19 19 H 1.48502 * 109.47126 * 329.99745 * 16 14 12 20 20 N 1.29940 * 107.42766 * 359.64462 * 6 5 4 21 21 O 1.21301 * 110.24965 * 0.22112 * 20 6 5 22 22 H 1.09001 * 109.47316 * 59.99220 * 1 2 3 23 23 H 1.09004 * 109.47718 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47101 * 299.99929 * 1 2 3 25 25 H 1.09006 * 109.47101 * 240.00071 * 2 1 3 26 26 H 1.09001 * 109.47316 * 120.00780 * 2 1 3 27 27 H 1.09004 * 109.46559 * 60.00638 * 3 2 1 28 28 H 1.08997 * 109.47087 * 300.00359 * 3 2 1 29 29 H 1.09004 * 109.46923 * 149.71796 * 7 6 5 30 30 H 1.09004 * 109.46818 * 29.72347 * 7 6 5 31 31 H 1.08997 * 109.47476 * 300.00325 * 11 8 7 32 32 H 1.08995 * 109.46830 * 60.00457 * 11 8 7 33 33 H 0.97002 * 119.99405 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3276 1.4471 -1.0543 6 6 5.5838 1.4422 -0.5743 7 6 6.8506 1.4426 -1.3906 8 16 7.3595 -0.2674 -1.7183 9 8 7.7082 -0.8803 -0.4847 10 8 6.3801 -0.8805 -2.5454 11 6 8.8705 -0.0284 -2.6931 12 6 9.4468 -1.3707 -3.0637 13 1 8.9531 -2.2769 -2.7450 14 6 10.6036 -1.4419 -3.8104 15 7 11.1063 -2.6133 -4.1342 16 14 11.4571 0.1255 -4.3622 17 1 12.4425 0.5415 -3.3321 18 1 12.1585 -0.1191 -5.6480 19 1 10.4487 1.2002 -4.5451 20 7 5.5048 1.4425 0.7227 21 8 4.3434 1.4426 1.0726 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9562 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 7.6379 1.9567 -0.8393 30 1 6.6737 1.9566 -2.3355 31 1 8.6339 0.5286 -3.5997 32 1 9.5986 0.5290 -2.1039 33 1 11.9204 -2.6633 -4.6592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262167438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:26 Heat of formation + Delta-G solvation = -13.451566 kcal Electronic energy + Delta-G solvation = -18850.201155 eV Core-core repulsion = 15620.807413 eV Total energy + Delta-G solvation = -3229.393742 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.75001 -36.45974 -36.24491 -35.78482 -35.27349 -33.29544 -32.69420 -30.08431 -29.56052 -27.98744 -23.99241 -23.20696 -22.47105 -21.31488 -18.49155 -18.10981 -17.74263 -17.26192 -15.91519 -15.84529 -15.60259 -15.40414 -15.11672 -14.26834 -13.99366 -13.82704 -13.23130 -12.93017 -12.74947 -12.59534 -12.29846 -12.18517 -12.01505 -11.72904 -11.65511 -11.34149 -11.28347 -11.16570 -11.07270 -10.89743 -10.73278 -10.37968 -9.98678 -9.77644 -9.39180 -8.86399 -6.33692 -4.43108 0.46155 1.06811 2.13702 2.64289 3.12172 3.17811 3.20385 3.22233 3.54354 3.75789 4.18357 4.34244 4.48548 4.53482 4.60579 4.71563 4.92225 4.95785 5.13014 5.19213 5.25596 5.34490 5.37773 5.58595 5.73563 5.75510 5.88406 5.93301 6.08432 6.19732 7.12698 7.99529 8.03157 8.59719 9.19624 10.77353 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.004216 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.152013 B = 6639.511587 C = 6906.002519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.025 4.025 4 C 0.177 3.823 5 N -0.464 5.464 6 C 0.180 3.820 7 C -0.550 4.550 8 S 2.414 3.586 9 O -0.935 6.935 10 O -0.930 6.930 11 C -0.448 4.448 12 C -0.532 4.532 13 H 0.089 0.911 14 C 0.089 3.911 15 N -0.878 5.878 16 Si 0.881 3.119 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.262 1.262 20 N -0.364 5.364 21 O 0.087 5.913 22 H 0.059 0.941 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.153 0.847 30 H 0.158 0.842 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.980 11.697 7.122 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.064 4.064 4 C -0.044 4.044 5 N -0.198 5.198 6 C -0.092 4.092 7 C -0.672 4.672 8 S 2.593 3.407 9 O -0.932 6.932 10 O -0.928 6.928 11 C -0.582 4.582 12 C -0.570 4.570 13 H 0.107 0.893 14 C -0.118 4.118 15 N -0.514 5.514 16 Si 0.707 3.293 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.187 1.187 20 N -0.069 5.069 21 O 0.024 5.976 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.130 0.870 29 H 0.171 0.829 30 H 0.176 0.824 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.470 10.892 7.400 21.087 hybrid contribution 0.894 1.620 -0.550 1.931 sum -15.575 12.512 6.850 21.120 Atomic orbital electron populations 1.21735 0.94224 1.02550 1.02160 1.21607 0.96853 0.94160 1.04057 1.20347 0.79674 1.00331 1.06020 1.28933 0.98794 0.96108 0.80592 1.71914 0.99683 1.19431 1.28733 1.24406 0.93843 1.02957 0.88027 1.29267 0.98342 1.32214 1.07412 1.08716 0.79204 0.75703 0.77065 1.93528 1.84241 1.70861 1.44553 1.93527 1.59823 1.70754 1.68646 1.27972 1.13343 1.07728 1.09186 1.20076 1.11365 0.88315 1.37266 0.89276 1.24879 0.96006 0.96645 0.94276 1.69862 1.21143 1.23846 1.36541 0.86750 0.80204 0.83396 0.78946 1.19492 1.20470 1.18669 1.74716 0.97361 1.19801 1.15045 1.85303 1.11263 1.65283 1.35737 0.92214 0.91930 0.92328 0.90413 0.90894 0.87859 0.87037 0.82894 0.82414 0.89293 0.89817 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.15 0.37 -0.43 16 2 C -0.13 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.02 -0.18 5.84 -27.88 -0.16 -0.34 16 4 C 0.18 2.23 7.77 -13.06 -0.10 2.13 16 5 N -0.46 -7.46 11.55 -9.88 -0.11 -7.58 16 6 C 0.18 3.12 7.48 -156.38 -1.17 1.95 16 7 C -0.55 -8.58 6.43 36.01 0.23 -8.35 16 8 S 2.41 50.35 4.62 -107.50 -0.50 49.85 16 9 O -0.93 -22.40 18.10 -57.83 -1.05 -23.45 16 10 O -0.93 -22.05 18.10 -57.83 -1.05 -23.10 16 11 C -0.45 -9.77 4.63 36.01 0.17 -9.61 16 12 C -0.53 -14.86 9.68 -34.44 -0.33 -15.20 16 13 H 0.09 2.73 7.96 -52.48 -0.42 2.31 16 14 C 0.09 2.48 5.47 -17.82 -0.10 2.39 16 15 N -0.88 -26.07 13.96 55.43 0.77 -25.29 16 16 Si 0.88 20.01 27.47 -169.99 -4.67 15.34 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.26 -5.43 6.54 56.52 0.37 -5.06 16 20 N -0.36 -6.23 12.16 30.89 0.38 -5.85 16 21 O 0.09 1.23 11.31 18.11 0.20 1.44 16 22 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.15 1.91 8.14 -51.92 -0.42 1.49 16 30 H 0.16 1.97 8.14 -51.92 -0.42 1.54 16 31 H 0.09 1.73 7.20 -51.93 -0.37 1.35 16 32 H 0.08 1.60 7.57 -51.93 -0.39 1.21 16 33 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -36.97 305.45 -6.83 -43.80 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: -4.16 Total: -1.17 kcal Atomic # 6 Polarization: -27.33 SS G_CDS: -1.26 Total: -28.59 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 1.04 Total: -38.72 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.89 Total: -45.11 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -4.67 Total: 15.34 kcal Atomic # 16 Polarization: 50.35 SS G_CDS: -0.50 Total: 49.85 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.97 -6.83 -43.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262167438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.345 kcal (2) G-P(sol) polarization free energy of solvation -36.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds