Wall clock time and date at job start Mon Mar 30 2020 01:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47535 * 2 1 4 4 C 1.50702 * 109.47132 * 180.02562 * 3 2 1 5 5 N 1.31129 * 126.55254 * 90.25481 * 4 3 2 6 6 C 1.34489 * 105.61416 * 180.11760 * 5 4 3 7 7 C 1.50702 * 126.28571 * 179.89990 * 6 5 4 8 8 S 1.81399 * 109.47410 * 269.71811 * 7 6 5 9 9 O 1.42098 * 108.57930 * 294.48552 * 8 7 6 10 10 O 1.42100 * 108.57478 * 65.51668 * 8 7 6 11 11 C 1.81404 * 101.91985 * 179.97438 * 8 7 6 12 12 C 1.50703 * 109.46895 * 179.97438 * 11 8 7 13 13 H 1.08004 * 120.00022 * 0.02562 * 12 11 8 14 14 C 1.37871 * 119.99968 * 179.97438 * 12 11 8 15 15 N 1.31519 * 120.00061 * 180.02562 * 14 12 11 16 16 Si 1.86807 * 120.00019 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.46912 * 89.99823 * 16 14 12 18 18 H 1.48499 * 109.47157 * 209.99997 * 16 14 12 19 19 H 1.48502 * 109.47126 * 329.99745 * 16 14 12 20 20 N 1.29940 * 107.42766 * 359.64462 * 6 5 4 21 21 O 1.21301 * 110.24965 * 0.22112 * 20 6 5 22 22 H 1.09001 * 109.47316 * 59.99220 * 1 2 3 23 23 H 1.09004 * 109.47718 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47101 * 299.99929 * 1 2 3 25 25 H 1.09006 * 109.47101 * 240.00071 * 2 1 3 26 26 H 1.09001 * 109.47316 * 120.00780 * 2 1 3 27 27 H 1.09004 * 109.46559 * 60.00638 * 3 2 1 28 28 H 1.08997 * 109.47087 * 300.00359 * 3 2 1 29 29 H 1.09004 * 109.46923 * 149.71796 * 7 6 5 30 30 H 1.09004 * 109.46818 * 29.72347 * 7 6 5 31 31 H 1.08997 * 109.47476 * 300.00325 * 11 8 7 32 32 H 1.08995 * 109.46830 * 60.00457 * 11 8 7 33 33 H 0.97002 * 119.99405 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.3276 1.4471 -1.0543 6 6 5.5838 1.4422 -0.5743 7 6 6.8506 1.4426 -1.3906 8 16 7.3595 -0.2674 -1.7183 9 8 7.7082 -0.8803 -0.4847 10 8 6.3801 -0.8805 -2.5454 11 6 8.8705 -0.0284 -2.6931 12 6 9.4468 -1.3707 -3.0637 13 1 8.9531 -2.2769 -2.7450 14 6 10.6036 -1.4419 -3.8104 15 7 11.1063 -2.6133 -4.1342 16 14 11.4571 0.1255 -4.3622 17 1 12.4425 0.5415 -3.3321 18 1 12.1585 -0.1191 -5.6480 19 1 10.4487 1.2002 -4.5451 20 7 5.5048 1.4425 0.7227 21 8 4.3434 1.4426 1.0726 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3635 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6768 1.9562 0.8901 28 1 1.6767 1.9563 -0.8899 29 1 7.6379 1.9567 -0.8393 30 1 6.6737 1.9566 -2.3355 31 1 8.6339 0.5286 -3.5997 32 1 9.5986 0.5290 -2.1039 33 1 11.9204 -2.6633 -4.6592 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262167438.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:25 Heat of formation + Delta-G solvation = -44.665163 kcal Electronic energy + Delta-G solvation = -18851.554678 eV Core-core repulsion = 15620.807413 eV Total energy + Delta-G solvation = -3230.747266 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.91668 -38.00936 -37.52919 -37.03722 -36.57267 -35.33263 -33.68590 -31.89686 -30.91762 -28.69392 -25.41913 -24.83743 -23.40972 -22.17892 -19.99628 -19.51697 -19.34415 -18.72880 -17.59284 -17.26048 -17.08401 -16.46688 -16.14930 -15.92195 -15.27571 -14.68601 -14.46588 -14.33071 -14.23547 -13.83461 -13.54666 -13.37854 -13.13016 -13.06650 -12.90972 -12.82551 -12.60139 -12.41095 -12.29460 -12.25859 -11.88741 -11.82719 -11.62749 -11.33336 -10.92905 -10.88066 -8.43301 -6.61226 -1.14713 -0.01600 0.95274 1.36641 1.40859 1.51571 1.68164 1.86097 2.17465 2.30074 2.64970 2.85105 2.88540 3.14562 3.57568 3.87653 3.95914 4.03008 4.10675 4.36062 4.37052 4.53445 4.58334 4.62295 4.74056 4.83473 4.91498 5.20895 5.23785 5.27104 5.46659 5.83283 6.44073 6.90545 7.06178 8.72586 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.037417 B = 0.004216 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.152013 B = 6639.511587 C = 6906.002519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C -0.023 4.023 4 C 0.192 3.808 5 N -0.494 5.494 6 C 0.153 3.847 7 C -0.520 4.520 8 S 2.412 3.588 9 O -0.982 6.982 10 O -0.975 6.975 11 C -0.457 4.457 12 C -0.558 4.558 13 H 0.032 0.968 14 C 0.020 3.980 15 N -0.937 5.937 16 Si 0.954 3.046 17 H -0.255 1.255 18 H -0.280 1.280 19 H -0.218 1.218 20 N -0.385 5.385 21 O 0.093 5.907 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.192 0.808 30 H 0.198 0.802 31 H 0.125 0.875 32 H 0.121 0.879 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.045 15.837 7.287 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.062 4.062 4 C -0.028 4.028 5 N -0.227 5.227 6 C -0.120 4.120 7 C -0.648 4.648 8 S 2.598 3.402 9 O -0.979 6.979 10 O -0.972 6.972 11 C -0.591 4.591 12 C -0.596 4.596 13 H 0.050 0.950 14 C -0.181 4.181 15 N -0.575 5.575 16 Si 0.773 3.227 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.140 1.140 20 N -0.091 5.091 21 O 0.029 5.971 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.096 0.904 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.160 0.840 28 H 0.148 0.852 29 H 0.209 0.791 30 H 0.215 0.785 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.540 14.966 7.556 24.264 hybrid contribution 1.047 0.284 -0.504 1.196 sum -16.493 15.251 7.051 23.544 Atomic orbital electron populations 1.21707 0.92161 1.02803 1.03473 1.21610 0.98564 0.94076 1.02568 1.20777 0.76018 1.00551 1.08827 1.29963 1.00297 0.93219 0.79344 1.71920 0.99725 1.21014 1.30053 1.24718 0.94760 1.04067 0.88409 1.28912 0.99158 1.26611 1.10128 1.08182 0.78414 0.77850 0.75743 1.93467 1.84715 1.74009 1.45728 1.93469 1.60520 1.73838 1.69399 1.27975 1.14636 1.04940 1.11557 1.20351 1.11904 0.89664 1.37689 0.94950 1.26142 0.96721 1.01265 0.93998 1.70038 1.22152 1.27273 1.38003 0.85615 0.79785 0.78795 0.78461 1.17972 1.20523 1.14007 1.74692 0.98799 1.20307 1.15291 1.85265 1.10771 1.65026 1.36052 0.91445 0.92291 0.90442 0.93060 0.91398 0.84009 0.85198 0.79062 0.78504 0.85700 0.86067 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.13 -1.76 5.92 30.59 0.18 -1.57 16 3 C -0.02 -0.27 5.84 29.85 0.17 -0.10 16 4 C 0.19 4.47 7.77 88.38 0.69 5.16 16 5 N -0.49 -15.03 11.55 -303.23 -3.50 -18.53 16 6 C 0.15 4.98 7.48 138.47 1.04 6.02 16 7 C -0.52 -14.55 6.43 71.24 0.46 -14.10 16 8 S 2.41 100.34 4.62 -56.49 -0.26 100.08 16 9 O -0.98 -48.53 18.10 -127.37 -2.31 -50.83 16 10 O -0.98 -47.59 18.10 -127.37 -2.30 -49.90 16 11 C -0.46 -19.15 4.63 71.24 0.33 -18.82 16 12 C -0.56 -32.11 9.68 25.60 0.25 -31.87 16 13 H 0.03 2.14 7.96 -2.91 -0.02 2.12 16 14 C 0.02 1.11 5.47 84.65 0.46 1.57 16 15 N -0.94 -57.95 13.96 21.45 0.30 -57.65 16 16 Si 0.95 39.53 27.47 68.60 1.88 41.42 16 17 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 18 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 19 H -0.22 -7.45 6.54 99.48 0.65 -6.80 16 20 N -0.38 -12.61 12.16 -60.35 -0.73 -13.34 16 21 O 0.09 2.48 11.31 74.86 0.85 3.33 16 22 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 24 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 25 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.14 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.19 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.20 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.13 4.35 7.20 -2.39 -0.02 4.33 16 32 H 0.12 4.19 7.57 -2.39 -0.02 4.18 16 33 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -87.57 305.45 -0.73 -88.30 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.06 Total: 11.32 kcal Atomic # 6 Polarization: -58.49 SS G_CDS: 4.29 Total: -54.20 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -3.94 Total: -89.52 kcal Atomic # 8 Polarization: -93.64 SS G_CDS: -3.76 Total: -97.41 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 1.88 Total: 41.42 kcal Atomic # 16 Polarization: 100.34 SS G_CDS: -0.26 Total: 100.08 kcal Total: -87.57 -0.73 -88.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262167438.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.637 kcal (2) G-P(sol) polarization free energy of solvation -87.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds