Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46414 * 119.23288 * 2 1 4 4 C 1.53245 * 109.11446 * 151.04704 * 3 2 1 5 5 H 1.09004 * 109.62297 * 295.40925 * 4 3 2 6 6 O 1.45201 * 109.62165 * 175.04147 * 4 3 2 7 7 C 1.34233 * 116.99912 * 150.37019 * 6 4 3 8 8 O 1.20821 * 119.99757 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99736 * 180.02562 * 7 6 4 10 10 S 1.81001 * 109.46896 * 180.02562 * 9 7 6 11 11 C 1.76192 * 100.00053 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00436 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99929 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00253 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99752 * 179.72153 * 13 11 10 16 16 H 1.48497 * 109.47323 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46790 * 120.00306 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00335 * 15 13 11 19 19 C 1.53241 * 108.71739 * 55.22680 * 4 3 2 20 20 N 1.46385 * 109.15029 * 304.61533 * 19 4 3 21 21 C 1.34131 * 121.34205 * 29.03560 * 20 19 4 22 22 O 1.21586 * 118.69424 * 179.45030 * 21 20 19 23 23 H 1.09003 * 109.47148 * 180.18325 * 1 2 3 24 24 H 1.09000 * 109.47005 * 300.18239 * 1 2 3 25 25 H 1.08997 * 109.47175 * 60.18046 * 1 2 3 26 26 H 1.09004 * 109.67678 * 31.07681 * 3 2 1 27 27 H 1.08991 * 109.41596 * 270.85962 * 3 2 1 28 28 H 1.08998 * 109.46989 * 60.00471 * 9 7 6 29 29 H 1.08996 * 109.47123 * 299.99497 * 9 7 6 30 30 H 0.97000 * 120.00481 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.52233 * 64.51372 * 19 4 3 32 32 H 1.08992 * 109.52543 * 184.71222 * 19 4 3 33 33 H 0.96994 * 119.32203 * 209.06028 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1801 1.2777 0.0000 4 6 3.5308 1.0968 0.7009 5 1 3.3685 0.8480 1.7497 6 8 4.2985 2.3255 0.6045 7 6 5.1595 2.5858 1.6009 8 8 5.2683 1.8124 2.5227 9 6 5.9904 3.8427 1.5696 10 16 7.0443 3.9060 3.0398 11 6 7.8804 5.4298 2.7515 12 1 7.6617 6.0066 1.8649 13 6 8.8196 5.8897 3.6643 14 7 9.0858 5.1871 4.7451 15 14 9.7117 7.5014 3.3547 16 1 9.2400 8.0907 2.0759 17 1 9.4307 8.4443 4.4671 18 1 11.1733 7.2509 3.2754 19 6 4.2928 -0.0414 0.0139 20 7 3.4611 -1.2460 0.0161 21 6 2.1221 -1.1694 0.0037 22 8 1.4784 -2.2008 -0.0041 23 1 -0.3633 -1.0277 0.0033 24 1 -0.3633 0.5167 0.8883 25 1 -0.3633 0.5110 -0.8916 26 1 1.5922 2.0273 0.5298 27 1 2.3436 1.6014 -1.0278 28 1 5.3333 4.7123 1.5555 29 1 6.6140 3.8438 0.6757 30 1 9.7424 5.5082 5.3828 31 1 4.5215 0.2415 -1.0136 32 1 5.2192 -0.2374 0.5536 33 1 3.8872 -2.1173 0.0270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263505849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = -103.716259 kcal Electronic energy + Delta-G solvation = -18618.050433 eV Core-core repulsion = 15384.742520 eV Total energy + Delta-G solvation = -3233.307913 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.14882 -40.06619 -37.05688 -35.70856 -35.24077 -32.55673 -31.00129 -29.37777 -27.76430 -25.68326 -25.63742 -23.36189 -21.16123 -19.55456 -18.24664 -17.80398 -17.70954 -17.16379 -16.16889 -16.01739 -15.49552 -15.02189 -14.91089 -14.48520 -14.37024 -14.18486 -13.81590 -13.17047 -12.90911 -12.75374 -12.70758 -12.29346 -12.02264 -11.55075 -11.16046 -11.14972 -10.87981 -10.86399 -10.36900 -10.20931 -9.96808 -9.43489 -9.19206 -8.96801 -8.45443 -6.69481 -6.34532 -4.08176 1.99053 2.41984 2.71586 2.88680 3.15076 3.19154 3.24615 3.39806 3.43504 4.07429 4.18390 4.25973 4.58775 4.85154 5.01790 5.03700 5.06243 5.10345 5.23743 5.34135 5.35674 5.54134 5.59345 5.64671 5.90233 5.95557 6.24761 6.42646 6.77574 7.44386 7.48821 7.92359 8.23320 8.27236 9.11321 10.72960 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.054941 B = 0.003241 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.516280 B = 8637.919207 C = 8831.279896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.624 5.624 3 C 0.118 3.882 4 C 0.059 3.941 5 H 0.100 0.900 6 O -0.345 6.345 7 C 0.479 3.521 8 O -0.480 6.480 9 C -0.128 4.128 10 S -0.057 6.057 11 C -0.537 4.537 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.922 3.078 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.279 1.279 19 C 0.093 3.907 20 N -0.729 5.729 21 C 0.709 3.291 22 O -0.597 6.597 23 H 0.093 0.907 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.270 0.730 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.592 -6.253 -11.190 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.364 5.364 3 C -0.005 4.005 4 C 0.002 3.998 5 H 0.118 0.882 6 O -0.262 6.262 7 C 0.320 3.680 8 O -0.365 6.365 9 C -0.276 4.276 10 S 0.169 5.831 11 C -0.685 4.685 12 H 0.096 0.904 13 C -0.135 4.135 14 N -0.501 5.501 15 Si 0.748 3.252 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.205 1.205 19 C -0.032 4.032 20 N -0.388 5.388 21 C 0.410 3.590 22 O -0.476 6.476 23 H 0.111 0.889 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.113 0.887 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.798 -7.602 -9.888 17.870 hybrid contribution 0.806 1.670 -1.072 2.142 sum -11.992 -5.932 -10.960 17.294 Atomic orbital electron populations 1.21650 0.76926 1.04709 1.01333 1.46567 1.07409 1.04020 1.78394 1.21442 0.91151 0.86041 1.01867 1.22915 0.90873 0.83724 1.02298 0.88168 1.86580 1.51290 1.40020 1.48268 1.23499 0.77667 0.87783 0.79036 1.90692 1.63631 1.47988 1.34154 1.23322 1.01224 0.94307 1.08733 1.85461 1.45747 1.30956 1.20946 1.22874 1.27156 1.07127 1.11368 0.90447 1.25012 0.95959 0.98195 0.94327 1.70009 1.32211 1.37752 1.10176 0.86060 0.79128 0.81505 0.78487 1.19466 1.20482 1.20472 1.21900 0.94769 0.84589 1.01909 1.44766 1.04201 1.09875 1.79954 1.15456 0.82089 0.83850 0.77606 1.90943 1.65218 1.32550 1.58866 0.88862 0.92090 0.92097 0.88700 0.90164 0.87675 0.87649 0.92040 0.90347 0.88707 0.74122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 10.60 59.85 0.63 1.43 16 2 N -0.62 -6.57 3.22 -187.68 -0.60 -7.17 16 3 C 0.12 1.08 6.22 -3.96 -0.02 1.05 16 4 C 0.06 0.68 2.69 -26.48 -0.07 0.61 16 5 H 0.10 1.34 7.17 -51.93 -0.37 0.97 16 6 O -0.35 -4.56 9.90 -39.27 -0.39 -4.95 16 7 C 0.48 8.12 7.96 36.01 0.29 8.40 16 8 O -0.48 -9.54 15.09 -18.75 -0.28 -9.82 16 9 C -0.13 -2.37 6.27 36.01 0.23 -2.14 16 10 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 11 C -0.54 -14.47 9.50 30.94 0.29 -14.18 16 12 H 0.08 1.97 7.80 -52.49 -0.41 1.56 16 13 C 0.07 2.04 5.49 -17.43 -0.10 1.94 16 14 N -0.87 -25.04 13.22 55.49 0.73 -24.31 16 15 Si 0.92 20.50 29.55 -169.99 -5.02 15.48 16 16 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 C 0.09 0.95 6.86 -3.98 -0.03 0.93 16 20 N -0.73 -7.82 5.58 -65.53 -0.37 -8.19 16 21 C 0.71 9.11 8.18 -88.07 -0.72 8.39 16 22 O -0.60 -9.55 16.24 5.29 0.09 -9.46 16 23 H 0.09 0.90 6.76 -51.93 -0.35 0.55 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 29 H 0.11 1.78 8.14 -51.92 -0.42 1.36 16 30 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.42 3.91 8.88 -40.82 -0.36 3.55 16 LS Contribution 302.45 15.07 4.56 4.56 Total: -1.00 -33.38 302.45 -7.01 -40.38 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -4.01 Total: 0.71 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 0.50 Total: 6.43 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: -0.24 Total: -39.66 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.59 Total: -24.24 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.38 -7.01 -40.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263505849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.332 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds