Wall clock time and date at job start Mon Mar 30 2020 01:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46414 * 119.23288 * 2 1 4 4 C 1.53245 * 109.11446 * 151.04704 * 3 2 1 5 5 H 1.09004 * 109.62297 * 295.40925 * 4 3 2 6 6 O 1.45201 * 109.62165 * 175.04147 * 4 3 2 7 7 C 1.34233 * 116.99912 * 150.37019 * 6 4 3 8 8 O 1.20821 * 119.99757 * 0.02562 * 7 6 4 9 9 C 1.50701 * 119.99736 * 180.02562 * 7 6 4 10 10 S 1.81001 * 109.46896 * 180.02562 * 9 7 6 11 11 C 1.76192 * 100.00053 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00436 * 0.02562 * 11 10 9 13 13 C 1.38805 * 119.99929 * 179.97438 * 11 10 9 14 14 N 1.31624 * 120.00253 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99752 * 179.72153 * 13 11 10 16 16 H 1.48497 * 109.47323 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46790 * 120.00306 * 15 13 11 18 18 H 1.48501 * 109.47364 * 240.00335 * 15 13 11 19 19 C 1.53241 * 108.71739 * 55.22680 * 4 3 2 20 20 N 1.46385 * 109.15029 * 304.61533 * 19 4 3 21 21 C 1.34131 * 121.34205 * 29.03560 * 20 19 4 22 22 O 1.21586 * 118.69424 * 179.45030 * 21 20 19 23 23 H 1.09003 * 109.47148 * 180.18325 * 1 2 3 24 24 H 1.09000 * 109.47005 * 300.18239 * 1 2 3 25 25 H 1.08997 * 109.47175 * 60.18046 * 1 2 3 26 26 H 1.09004 * 109.67678 * 31.07681 * 3 2 1 27 27 H 1.08991 * 109.41596 * 270.85962 * 3 2 1 28 28 H 1.08998 * 109.46989 * 60.00471 * 9 7 6 29 29 H 1.08996 * 109.47123 * 299.99497 * 9 7 6 30 30 H 0.97000 * 120.00481 * 179.97438 * 14 13 11 31 31 H 1.08997 * 109.52233 * 64.51372 * 19 4 3 32 32 H 1.08992 * 109.52543 * 184.71222 * 19 4 3 33 33 H 0.96994 * 119.32203 * 209.06028 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1801 1.2777 0.0000 4 6 3.5308 1.0968 0.7009 5 1 3.3685 0.8480 1.7497 6 8 4.2985 2.3255 0.6045 7 6 5.1595 2.5858 1.6009 8 8 5.2683 1.8124 2.5227 9 6 5.9904 3.8427 1.5696 10 16 7.0443 3.9060 3.0398 11 6 7.8804 5.4298 2.7515 12 1 7.6617 6.0066 1.8649 13 6 8.8196 5.8897 3.6643 14 7 9.0858 5.1871 4.7451 15 14 9.7117 7.5014 3.3547 16 1 9.2400 8.0907 2.0759 17 1 9.4307 8.4443 4.4671 18 1 11.1733 7.2509 3.2754 19 6 4.2928 -0.0414 0.0139 20 7 3.4611 -1.2460 0.0161 21 6 2.1221 -1.1694 0.0037 22 8 1.4784 -2.2008 -0.0041 23 1 -0.3633 -1.0277 0.0033 24 1 -0.3633 0.5167 0.8883 25 1 -0.3633 0.5110 -0.8916 26 1 1.5922 2.0273 0.5298 27 1 2.3436 1.6014 -1.0278 28 1 5.3333 4.7123 1.5555 29 1 6.6140 3.8438 0.6757 30 1 9.7424 5.5082 5.3828 31 1 4.5215 0.2415 -1.0136 32 1 5.2192 -0.2374 0.5536 33 1 3.8872 -2.1173 0.0270 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263505849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:02 Heat of formation + Delta-G solvation = -127.438531 kcal Electronic energy + Delta-G solvation = -18619.079108 eV Core-core repulsion = 15384.742520 eV Total energy + Delta-G solvation = -3234.336588 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.16809 -41.24733 -38.23348 -36.80136 -36.08619 -34.59586 -32.14496 -30.64474 -28.53237 -27.69262 -26.47465 -24.37700 -22.39211 -20.46706 -19.92635 -19.04874 -18.71634 -18.30583 -17.28516 -17.19450 -16.88299 -16.69681 -15.98228 -15.87329 -15.28666 -15.25908 -14.88051 -14.55922 -14.24136 -14.04412 -13.65495 -13.17591 -13.12964 -13.02351 -12.91263 -12.64449 -12.48655 -11.98722 -11.75265 -11.67335 -11.32851 -11.16382 -10.37930 -10.34849 -9.74409 -8.71665 -8.36489 -6.15499 0.81807 1.06550 1.37180 1.43463 1.51781 1.60580 1.90050 2.02468 2.24847 2.60217 2.99337 3.22316 3.32039 3.40391 3.63720 3.87530 4.21529 4.27843 4.34377 4.36937 4.47860 4.56297 4.59930 4.73253 4.93707 5.07458 5.20497 5.43602 5.49150 5.92022 6.19862 6.55800 6.60877 7.06220 7.34084 8.72720 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.054941 B = 0.003241 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.516280 B = 8637.919207 C = 8831.279896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.624 5.624 3 C 0.123 3.877 4 C 0.056 3.944 5 H 0.079 0.921 6 O -0.325 6.325 7 C 0.491 3.509 8 O -0.514 6.514 9 C -0.107 4.107 10 S -0.140 6.140 11 C -0.545 4.545 12 H 0.088 0.912 13 C 0.016 3.984 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.276 1.276 19 C 0.097 3.903 20 N -0.723 5.723 21 C 0.700 3.300 22 O -0.635 6.635 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.272 0.728 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 -4.600 -13.182 19.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.363 5.363 3 C 0.000 4.000 4 C -0.002 4.002 5 H 0.097 0.903 6 O -0.240 6.240 7 C 0.333 3.667 8 O -0.402 6.402 9 C -0.256 4.256 10 S 0.087 5.913 11 C -0.693 4.693 12 H 0.106 0.894 13 C -0.189 4.189 14 N -0.547 5.547 15 Si 0.820 3.180 16 H -0.178 1.178 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.028 4.028 20 N -0.383 5.383 21 C 0.400 3.600 22 O -0.518 6.518 23 H 0.092 0.908 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.120 0.880 28 H 0.144 0.856 29 H 0.145 0.855 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.401 -5.928 -11.909 18.882 hybrid contribution 0.884 1.088 -0.516 1.494 sum -12.517 -4.840 -12.424 18.289 Atomic orbital electron populations 1.21812 0.75599 1.04122 1.03368 1.46706 1.08306 1.03737 1.77525 1.21553 0.89705 0.85671 1.03029 1.23093 0.92093 0.83191 1.01785 0.90255 1.86533 1.50393 1.40852 1.46252 1.23095 0.77680 0.86841 0.79078 1.90700 1.64802 1.48966 1.35692 1.23099 1.00849 0.96051 1.05562 1.85587 1.48058 1.31450 1.26201 1.23235 1.27128 1.07274 1.11680 0.89353 1.26093 0.96837 1.02050 0.93940 1.70163 1.33198 1.39916 1.11417 0.84908 0.77579 0.76605 0.78899 1.17838 1.20121 1.20121 1.21924 0.94102 0.83920 1.02870 1.44734 1.03768 1.10418 1.79338 1.15706 0.82473 0.84106 0.77668 1.90915 1.66084 1.34044 1.60730 0.90757 0.90494 0.89584 0.86777 0.87981 0.85576 0.85452 0.91930 0.88193 0.89255 0.73557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.60 127.77 1.35 2.69 16 2 N -0.62 -11.88 3.22 -866.31 -2.79 -14.66 16 3 C 0.12 1.86 6.22 86.48 0.54 2.39 16 4 C 0.06 1.16 2.69 30.76 0.08 1.24 16 5 H 0.08 2.05 7.17 -2.39 -0.02 2.04 16 6 O -0.33 -7.72 9.90 -51.45 -0.51 -8.23 16 7 C 0.49 15.89 7.96 71.24 0.57 16.46 16 8 O -0.51 -20.39 15.09 21.98 0.33 -20.06 16 9 C -0.11 -3.77 6.27 71.24 0.45 -3.32 16 10 S -0.14 -7.13 20.57 -56.49 -1.16 -8.29 16 11 C -0.55 -29.12 9.50 67.96 0.65 -28.47 16 12 H 0.09 4.35 7.80 -2.91 -0.02 4.32 16 13 C 0.02 0.86 5.49 84.86 0.47 1.32 16 14 N -0.91 -53.41 13.22 21.65 0.29 -53.12 16 15 Si 1.00 41.46 29.55 68.60 2.03 43.48 16 16 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 19 C 0.10 1.80 6.86 86.48 0.59 2.39 16 20 N -0.72 -14.84 5.58 -479.87 -2.68 -17.52 16 21 C 0.70 17.37 8.18 179.46 1.47 18.84 16 22 O -0.64 -20.40 16.24 -3.99 -0.06 -20.46 16 23 H 0.07 1.40 6.76 -2.39 -0.02 1.38 16 24 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.11 1.34 8.07 -2.38 -0.02 1.32 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.13 3.95 8.14 -2.40 -0.02 3.93 16 29 H 0.13 3.96 8.14 -2.40 -0.02 3.94 16 30 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.43 7.74 8.88 -92.71 -0.82 6.91 16 Total: -1.00 -73.42 302.45 1.92 -71.50 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.32 Total: 13.80 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 6.16 Total: 13.56 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -5.18 Total: -85.30 kcal Atomic # 8 Polarization: -48.51 SS G_CDS: -0.24 Total: -48.75 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: -7.13 SS G_CDS: -1.16 Total: -8.29 kcal Total: -73.42 1.92 -71.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263505849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.940 kcal (2) G-P(sol) polarization free energy of solvation -73.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds