Wall clock time and date at job start Mon Mar 30 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46386 * 119.32846 * 2 1 4 4 C 1.53243 * 109.14984 * 209.06016 * 3 2 1 5 5 H 1.08994 * 109.62241 * 64.23844 * 4 3 2 6 6 O 1.45206 * 109.61989 * 184.79475 * 4 3 2 7 7 C 1.34224 * 116.99793 * 209.99872 * 6 4 3 8 8 O 1.20828 * 120.00311 * 0.02562 * 7 6 4 9 9 C 1.50705 * 119.99720 * 180.02562 * 7 6 4 10 10 S 1.81002 * 109.47003 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99731 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00248 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99641 * 179.97438 * 11 10 9 14 14 N 1.31636 * 120.00467 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46863 * 60.00204 * 15 13 11 17 17 H 1.48505 * 109.46861 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46761 * 300.00005 * 15 13 11 19 19 C 1.53259 * 108.55142 * 304.50496 * 4 3 2 20 20 N 1.46383 * 109.14095 * 55.50841 * 19 4 3 21 21 C 1.34129 * 121.34066 * 330.92979 * 20 19 4 22 22 O 1.21593 * 118.69660 * 180.57359 * 21 20 19 23 23 H 1.08992 * 109.46871 * 90.00043 * 1 2 3 24 24 H 1.08996 * 109.46824 * 210.00696 * 1 2 3 25 25 H 1.09002 * 109.46822 * 330.00091 * 1 2 3 26 26 H 1.09001 * 109.52021 * 328.95683 * 3 2 1 27 27 H 1.08994 * 109.52840 * 89.15420 * 3 2 1 28 28 H 1.09008 * 109.46890 * 299.99578 * 9 7 6 29 29 H 1.08998 * 109.47483 * 59.99775 * 9 7 6 30 30 H 0.96993 * 120.00072 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.53926 * 295.60206 * 19 4 3 32 32 H 1.09003 * 109.52126 * 175.40613 * 19 4 3 33 33 H 0.97005 * 119.32633 * 150.94801 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1820 1.2762 0.0000 4 6 3.5315 1.0947 -0.7032 5 1 3.3673 0.8411 -1.7504 6 8 4.2992 2.3237 -0.6098 7 6 5.1527 2.5866 -1.6118 8 8 5.2547 1.8156 -2.5365 9 6 5.9838 3.8434 -1.5833 10 16 7.0268 3.9105 -3.0611 11 6 7.8640 5.4345 -2.7757 12 1 7.6514 6.0091 -1.8863 13 6 8.7968 5.8963 -3.6939 14 7 9.0556 5.1962 -4.7782 15 14 9.6850 7.5116 -3.3909 16 1 10.4457 7.4270 -2.1184 17 1 10.6220 7.7789 -4.5116 18 1 8.6928 8.6129 -3.3024 19 6 4.2928 -0.0414 -0.0114 20 7 3.4612 -1.2461 -0.0112 21 6 2.1221 -1.1694 -0.0004 22 8 1.4783 -2.2008 0.0100 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.5930 2.0249 -0.5298 27 1 2.3473 1.6013 1.0271 28 1 5.3269 4.7130 -1.5620 29 1 6.6141 3.8423 -0.6940 30 1 9.7071 5.5193 -5.4200 31 1 4.5202 0.2445 1.0156 32 1 5.2201 -0.2389 -0.5493 33 1 3.8872 -2.1175 -0.0187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263505850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:04 Heat of formation + Delta-G solvation = -103.851857 kcal Electronic energy + Delta-G solvation = -18616.338005 eV Core-core repulsion = 15383.024212 eV Total energy + Delta-G solvation = -3233.313793 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.14229 -40.05903 -37.05096 -35.71150 -35.23362 -32.55304 -31.00305 -29.37967 -27.75778 -25.68754 -25.63326 -23.36677 -21.16293 -19.56402 -18.24341 -17.78295 -17.69864 -17.15532 -16.17601 -16.00809 -15.48458 -15.02050 -14.90685 -14.49145 -14.34749 -14.18872 -13.80912 -13.10645 -12.92854 -12.76277 -12.74352 -12.32456 -12.02957 -11.55329 -11.18098 -11.11419 -10.89270 -10.85747 -10.37105 -10.21358 -9.98884 -9.43076 -9.17291 -8.95461 -8.46277 -6.69328 -6.33963 -4.07953 1.99036 2.42041 2.71851 2.89837 3.17279 3.18934 3.22916 3.39655 3.44097 4.07979 4.18230 4.26153 4.58620 4.82622 4.99730 5.02059 5.04188 5.10791 5.27099 5.34176 5.36257 5.53075 5.58238 5.64649 5.90589 5.95517 6.24578 6.42734 6.77776 7.45202 7.48391 7.92437 8.23151 8.28104 9.11509 10.73423 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.054886 B = 0.003240 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.030454 B = 8640.205403 C = 8830.672323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.625 5.625 3 C 0.118 3.882 4 C 0.059 3.941 5 H 0.101 0.899 6 O -0.345 6.345 7 C 0.479 3.521 8 O -0.480 6.480 9 C -0.128 4.128 10 S -0.057 6.057 11 C -0.539 4.539 12 H 0.076 0.924 13 C 0.075 3.925 14 N -0.867 5.867 15 Si 0.922 3.078 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.273 1.273 19 C 0.094 3.906 20 N -0.729 5.729 21 C 0.708 3.292 22 O -0.596 6.596 23 H 0.055 0.945 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.271 0.729 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.510 -6.168 11.359 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.364 5.364 3 C -0.006 4.006 4 C 0.002 3.998 5 H 0.119 0.881 6 O -0.261 6.261 7 C 0.320 3.680 8 O -0.365 6.365 9 C -0.276 4.276 10 S 0.170 5.830 11 C -0.687 4.687 12 H 0.095 0.905 13 C -0.134 4.134 14 N -0.502 5.502 15 Si 0.748 3.252 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.198 1.198 19 C -0.032 4.032 20 N -0.388 5.388 21 C 0.409 3.591 22 O -0.475 6.475 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.727 -7.513 10.042 17.868 hybrid contribution 0.803 1.656 1.075 2.132 sum -11.923 -5.856 11.117 17.322 Atomic orbital electron populations 1.21575 0.76848 1.03373 1.02136 1.46591 1.07367 1.04028 1.78452 1.21468 0.91216 0.86075 1.01820 1.22913 0.90872 0.83733 1.02294 0.88121 1.86580 1.51638 1.40001 1.47917 1.23500 0.77649 0.87753 0.79088 1.90695 1.63482 1.48122 1.34165 1.23326 1.01212 0.94304 1.08757 1.85459 1.46389 1.30934 1.20250 1.22794 1.27610 1.07233 1.11031 0.90544 1.25006 0.95928 0.98184 0.94318 1.69993 1.32487 1.37911 1.09792 0.86169 0.79154 0.81786 0.78100 1.19795 1.20750 1.19803 1.21902 0.94769 0.84620 1.01867 1.44773 1.04210 1.09856 1.80009 1.15466 0.82067 0.83811 0.77747 1.90956 1.65301 1.32564 1.58659 0.92636 0.89972 0.90969 0.88731 0.90147 0.87677 0.87652 0.91926 0.90352 0.88737 0.74132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 10.34 59.85 0.62 1.46 16 2 N -0.62 -6.56 3.22 -187.71 -0.60 -7.16 16 3 C 0.12 1.06 6.16 -3.98 -0.02 1.04 16 4 C 0.06 0.68 2.70 -26.47 -0.07 0.61 16 5 H 0.10 1.35 7.16 -51.93 -0.37 0.98 16 6 O -0.34 -4.55 9.90 -39.24 -0.39 -4.94 16 7 C 0.48 8.12 7.96 36.01 0.29 8.41 16 8 O -0.48 -9.55 15.08 -18.75 -0.28 -9.83 16 9 C -0.13 -2.37 6.27 36.01 0.23 -2.14 16 10 S -0.06 -1.43 20.58 -107.50 -2.21 -3.64 16 11 C -0.54 -14.52 9.50 30.94 0.29 -14.23 16 12 H 0.08 1.93 7.80 -52.49 -0.41 1.52 16 13 C 0.08 2.06 5.49 -17.43 -0.10 1.96 16 14 N -0.87 -25.08 13.22 55.49 0.73 -24.35 16 15 Si 0.92 20.50 29.55 -169.99 -5.02 15.47 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 19 C 0.09 0.95 6.86 -3.97 -0.03 0.93 16 20 N -0.73 -7.84 5.58 -65.52 -0.37 -8.20 16 21 C 0.71 9.13 8.18 -88.07 -0.72 8.41 16 22 O -0.60 -9.61 16.49 5.28 0.09 -9.52 16 23 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.75 7.30 -51.93 -0.38 0.37 16 25 H 0.07 0.39 8.05 -51.93 -0.42 -0.02 16 26 H 0.09 0.73 8.06 -51.93 -0.42 0.31 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.11 1.78 8.14 -51.91 -0.42 1.36 16 29 H 0.11 1.78 8.14 -51.92 -0.42 1.35 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.42 3.92 8.88 -40.82 -0.36 3.56 16 LS Contribution 302.84 15.07 4.56 4.56 Total: -1.00 -33.49 302.84 -7.04 -40.53 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -4.03 Total: 0.65 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 0.49 Total: 6.44 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: -0.24 Total: -39.72 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.58 Total: -24.30 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.21 Total: -3.64 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.49 -7.04 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263505850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.325 kcal (2) G-P(sol) polarization free energy of solvation -33.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds