Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46386 * 119.32846 * 2 1 4 4 C 1.53243 * 109.14984 * 209.06016 * 3 2 1 5 5 H 1.08994 * 109.62241 * 64.23844 * 4 3 2 6 6 O 1.45206 * 109.61989 * 184.79475 * 4 3 2 7 7 C 1.34224 * 116.99793 * 209.99872 * 6 4 3 8 8 O 1.20828 * 120.00311 * 0.02562 * 7 6 4 9 9 C 1.50705 * 119.99720 * 180.02562 * 7 6 4 10 10 S 1.81002 * 109.47003 * 179.97438 * 9 7 6 11 11 C 1.76205 * 99.99731 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00248 * 359.97438 * 11 10 9 13 13 C 1.38796 * 119.99641 * 179.97438 * 11 10 9 14 14 N 1.31636 * 120.00467 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99875 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46863 * 60.00204 * 15 13 11 17 17 H 1.48505 * 109.46861 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46761 * 300.00005 * 15 13 11 19 19 C 1.53259 * 108.55142 * 304.50496 * 4 3 2 20 20 N 1.46383 * 109.14095 * 55.50841 * 19 4 3 21 21 C 1.34129 * 121.34066 * 330.92979 * 20 19 4 22 22 O 1.21593 * 118.69660 * 180.57359 * 21 20 19 23 23 H 1.08992 * 109.46871 * 90.00043 * 1 2 3 24 24 H 1.08996 * 109.46824 * 210.00696 * 1 2 3 25 25 H 1.09002 * 109.46822 * 330.00091 * 1 2 3 26 26 H 1.09001 * 109.52021 * 328.95683 * 3 2 1 27 27 H 1.08994 * 109.52840 * 89.15420 * 3 2 1 28 28 H 1.09008 * 109.46890 * 299.99578 * 9 7 6 29 29 H 1.08998 * 109.47483 * 59.99775 * 9 7 6 30 30 H 0.96993 * 120.00072 * 179.97438 * 14 13 11 31 31 H 1.09004 * 109.53926 * 295.60206 * 19 4 3 32 32 H 1.09003 * 109.52126 * 175.40613 * 19 4 3 33 33 H 0.97005 * 119.32633 * 150.94801 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1820 1.2762 0.0000 4 6 3.5315 1.0947 -0.7032 5 1 3.3673 0.8411 -1.7504 6 8 4.2992 2.3237 -0.6098 7 6 5.1527 2.5866 -1.6118 8 8 5.2547 1.8156 -2.5365 9 6 5.9838 3.8434 -1.5833 10 16 7.0268 3.9105 -3.0611 11 6 7.8640 5.4345 -2.7757 12 1 7.6514 6.0091 -1.8863 13 6 8.7968 5.8963 -3.6939 14 7 9.0556 5.1962 -4.7782 15 14 9.6850 7.5116 -3.3909 16 1 10.4457 7.4270 -2.1184 17 1 10.6220 7.7789 -4.5116 18 1 8.6928 8.6129 -3.3024 19 6 4.2928 -0.0414 -0.0114 20 7 3.4612 -1.2461 -0.0112 21 6 2.1221 -1.1694 -0.0004 22 8 1.4783 -2.2008 0.0100 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 1.5930 2.0249 -0.5298 27 1 2.3473 1.6013 1.0271 28 1 5.3269 4.7130 -1.5620 29 1 6.6141 3.8423 -0.6940 30 1 9.7071 5.5193 -5.4200 31 1 4.5202 0.2445 1.0156 32 1 5.2201 -0.2389 -0.5493 33 1 3.8872 -2.1175 -0.0187 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263505850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = -127.722325 kcal Electronic energy + Delta-G solvation = -18617.373106 eV Core-core repulsion = 15383.024212 eV Total energy + Delta-G solvation = -3234.348894 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.16358 -41.24111 -38.22986 -36.80418 -36.08242 -34.59304 -32.14618 -30.64717 -28.52542 -27.68819 -26.47812 -24.38220 -22.39469 -20.47653 -19.92368 -19.04728 -18.69060 -18.29789 -17.28749 -17.19460 -16.87711 -16.69102 -15.98175 -15.86865 -15.29567 -15.24844 -14.86769 -14.55153 -14.21058 -14.05845 -13.65054 -13.20136 -13.16518 -13.01333 -12.85705 -12.67585 -12.49282 -11.98696 -11.79508 -11.67034 -11.34330 -11.12790 -10.37979 -10.35625 -9.74008 -8.71653 -8.36007 -6.15405 0.81840 1.06581 1.36954 1.46294 1.51215 1.58963 1.90622 2.02711 2.25508 2.60922 2.99547 3.22546 3.32037 3.40612 3.63685 3.87710 4.21580 4.27461 4.32456 4.36601 4.47848 4.56918 4.58613 4.72983 4.92205 5.08031 5.21049 5.43080 5.48848 5.91877 6.19535 6.56420 6.60939 7.06325 7.34439 8.72722 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.054886 B = 0.003240 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.030454 B = 8640.205403 C = 8830.672323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.624 5.624 3 C 0.122 3.878 4 C 0.055 3.945 5 H 0.079 0.921 6 O -0.325 6.325 7 C 0.491 3.509 8 O -0.515 6.515 9 C -0.107 4.107 10 S -0.140 6.140 11 C -0.548 4.548 12 H 0.089 0.911 13 C 0.016 3.984 14 N -0.911 5.911 15 Si 0.997 3.003 16 H -0.261 1.261 17 H -0.282 1.282 18 H -0.262 1.262 19 C 0.097 3.903 20 N -0.724 5.724 21 C 0.699 3.301 22 O -0.635 6.635 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.272 0.728 31 H 0.100 0.900 32 H 0.089 0.911 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.080 -4.476 13.381 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.363 5.363 3 C -0.001 4.001 4 C -0.002 4.002 5 H 0.097 0.903 6 O -0.240 6.240 7 C 0.333 3.667 8 O -0.402 6.402 9 C -0.256 4.256 10 S 0.087 5.913 11 C -0.695 4.695 12 H 0.107 0.893 13 C -0.189 4.189 14 N -0.547 5.547 15 Si 0.819 3.181 16 H -0.186 1.186 17 H -0.207 1.207 18 H -0.186 1.186 19 C -0.028 4.028 20 N -0.383 5.383 21 C 0.399 3.601 22 O -0.518 6.518 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.121 0.879 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.081 0.919 31 H 0.118 0.882 32 H 0.107 0.893 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.310 -5.799 12.094 18.896 hybrid contribution 0.877 1.061 0.512 1.468 sum -12.433 -4.738 12.605 18.328 Atomic orbital electron populations 1.21747 0.75519 1.04383 1.02606 1.46727 1.08271 1.03746 1.77520 1.21589 0.89748 0.85688 1.03031 1.23091 0.92127 0.83208 1.01766 0.90265 1.86532 1.50748 1.40821 1.45875 1.23098 0.77649 0.86814 0.79139 1.90702 1.64664 1.49110 1.35714 1.23102 1.00888 0.96048 1.05523 1.85588 1.48666 1.31445 1.25578 1.23179 1.27562 1.07391 1.11399 0.89324 1.26093 0.96798 1.02064 0.93913 1.70155 1.33470 1.40063 1.11029 0.85014 0.77900 0.76967 0.78217 1.18576 1.20684 1.18604 1.21929 0.94094 0.83934 1.02849 1.44741 1.03775 1.10413 1.79371 1.15728 0.82461 0.84079 0.77784 1.90925 1.66188 1.34089 1.60565 0.92462 0.91319 0.87597 0.86770 0.87862 0.85560 0.85441 0.91921 0.88156 0.89276 0.73573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.43 10.34 127.77 1.32 2.75 16 2 N -0.62 -11.86 3.22 -866.39 -2.79 -14.65 16 3 C 0.12 1.82 6.16 86.48 0.53 2.35 16 4 C 0.06 1.15 2.70 30.76 0.08 1.24 16 5 H 0.08 2.06 7.16 -2.39 -0.02 2.04 16 6 O -0.32 -7.69 9.90 -51.36 -0.51 -8.19 16 7 C 0.49 15.89 7.96 71.24 0.57 16.46 16 8 O -0.51 -20.44 15.08 21.96 0.33 -20.11 16 9 C -0.11 -3.77 6.27 71.24 0.45 -3.32 16 10 S -0.14 -7.12 20.58 -56.49 -1.16 -8.28 16 11 C -0.55 -29.25 9.50 67.95 0.65 -28.60 16 12 H 0.09 4.34 7.80 -2.91 -0.02 4.31 16 13 C 0.02 0.89 5.49 84.86 0.47 1.36 16 14 N -0.91 -53.52 13.22 21.65 0.29 -53.23 16 15 Si 1.00 41.39 29.55 68.60 2.03 43.41 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 17 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 19 C 0.10 1.80 6.86 86.49 0.59 2.39 16 20 N -0.72 -14.87 5.58 -479.81 -2.68 -17.55 16 21 C 0.70 17.42 8.18 179.46 1.47 18.89 16 22 O -0.64 -20.55 16.49 -4.01 -0.07 -20.62 16 23 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.07 1.20 7.30 -2.39 -0.02 1.19 16 25 H 0.11 0.80 8.05 -2.39 -0.02 0.78 16 26 H 0.11 1.32 8.06 -2.39 -0.02 1.30 16 27 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.13 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.13 3.96 8.14 -2.40 -0.02 3.94 16 30 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.43 7.76 8.88 -92.70 -0.82 6.94 16 Total: -1.00 -73.82 302.84 1.88 -71.94 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.31 Total: 13.76 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.12 Total: 13.51 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -5.18 Total: -85.43 kcal Atomic # 8 Polarization: -48.67 SS G_CDS: -0.24 Total: -48.91 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: -7.12 SS G_CDS: -1.16 Total: -8.28 kcal Total: -73.82 1.88 -71.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263505850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.779 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds