Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30248 * 125.62248 * 2 1 4 4 C 1.34478 * 108.70639 * 179.73396 * 3 2 1 5 5 C 1.34330 * 107.66489 * 0.39184 * 4 3 2 6 6 C 1.50701 * 126.44361 * 179.87721 * 5 4 3 7 7 N 1.46495 * 109.47031 * 89.71458 * 6 5 4 8 8 S 1.65608 * 119.99695 * 165.00069 * 7 6 5 9 9 O 1.42102 * 104.27363 * 181.06921 * 8 7 6 10 10 O 1.42097 * 104.27711 * 308.92535 * 8 7 6 11 11 C 1.81401 * 104.44945 * 64.99881 * 8 7 6 12 12 C 1.52998 * 109.46866 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.46802 * 179.97438 * 12 11 8 14 14 H 1.08008 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99722 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47064 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46991 * 119.99857 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99901 * 17 15 13 21 21 O 1.33971 * 125.61860 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47145 * 270.02351 * 1 2 3 23 23 H 1.09002 * 109.46782 * 30.02555 * 1 2 3 24 24 H 1.09004 * 109.46674 * 150.02300 * 1 2 3 25 25 H 1.07993 * 126.17107 * 180.26941 * 4 3 2 26 26 H 1.09000 * 109.46835 * 329.70931 * 6 5 4 27 27 H 1.09003 * 109.47042 * 209.71871 * 6 5 4 28 28 H 0.96999 * 120.00130 * 344.99832 * 7 6 5 29 29 H 1.08996 * 109.47000 * 300.00248 * 11 8 7 30 30 H 1.09006 * 109.46904 * 59.99979 * 11 8 7 31 31 H 1.08993 * 109.47317 * 300.00064 * 12 11 8 32 32 H 1.08998 * 109.47275 * 60.00757 * 12 11 8 33 33 H 0.96992 * 119.99792 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 0.0059 5 6 3.5698 -0.6757 0.0009 6 6 4.7937 -1.5550 0.0019 7 7 5.1893 -1.8395 1.3835 8 16 6.2574 -3.0640 1.7034 9 8 6.3805 -3.0607 3.1190 10 8 5.7197 -4.1863 1.0174 11 6 7.8071 -2.5269 0.9284 12 6 8.8862 -3.5870 1.1577 13 6 10.1734 -3.1411 0.5134 14 1 10.2176 -2.1957 -0.0072 15 6 11.2948 -3.9398 0.5884 16 7 11.2409 -5.0911 1.2218 17 14 12.8906 -3.3867 -0.2096 18 1 12.6894 -2.0639 -0.8539 19 1 13.9496 -3.2765 0.8257 20 1 13.3017 -4.3796 -1.2345 21 8 2.2873 -1.0891 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 4.4157 1.3161 0.0115 26 1 5.6084 -1.0443 -0.5115 27 1 4.5699 -2.4899 -0.5119 28 1 4.8257 -1.3108 2.1108 29 1 7.6507 -2.3926 -0.1418 30 1 8.1261 -1.5828 1.3703 31 1 9.0425 -3.7209 2.2280 32 1 8.5675 -4.5312 0.7161 33 1 12.0298 -5.6528 1.2749 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001309574840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -60.290362 kcal Electronic energy + Delta-G solvation = -18562.948664 eV Core-core repulsion = 15331.523839 eV Total energy + Delta-G solvation = -3231.424825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.59021 -36.72016 -35.81776 -35.47376 -35.00892 -33.93961 -32.22681 -31.21262 -28.85345 -25.65380 -25.16386 -22.55039 -21.74377 -21.33450 -19.11849 -17.83264 -17.37770 -16.92606 -16.52231 -16.04067 -15.57024 -14.86187 -14.71356 -14.56513 -14.30686 -13.81548 -13.48342 -13.36139 -13.10269 -12.75005 -12.53880 -11.81783 -11.80018 -11.67646 -11.59428 -11.52962 -11.12436 -11.00420 -10.80872 -10.45694 -10.43484 -9.91737 -9.62642 -9.14362 -9.01857 -8.53895 -6.15847 -4.21640 0.60287 1.16458 2.34260 2.38912 3.10074 3.23337 3.30835 3.33889 3.75128 4.16336 4.33811 4.36069 4.61823 4.72592 4.82550 4.98719 4.99399 5.16772 5.19606 5.23427 5.44951 5.55472 5.60032 5.74782 5.77968 6.05113 6.41961 6.88522 7.25933 7.31566 7.44543 7.77185 8.13241 8.82080 9.43507 10.95213 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.003669 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.288628 B = 7630.472982 C = 8122.736674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.191 3.809 3 N -0.487 5.487 4 C -0.019 4.019 5 C -0.055 4.055 6 C 0.203 3.797 7 N -1.127 6.127 8 S 2.591 3.409 9 O -0.962 6.962 10 O -0.964 6.964 11 C -0.588 4.588 12 C 0.027 3.973 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 O -0.194 6.194 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.189 0.811 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.415 0.585 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.894 10.632 -3.502 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.015 4.015 3 N -0.217 5.217 4 C -0.159 4.159 5 C -0.109 4.109 6 C 0.076 3.924 7 N -0.885 5.885 8 S 2.689 3.311 9 O -0.952 6.952 10 O -0.954 6.954 11 C -0.721 4.721 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 O -0.081 6.081 22 H 0.112 0.888 23 H 0.119 0.881 24 H 0.108 0.892 25 H 0.206 0.794 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.249 0.751 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.228 10.120 -3.118 21.081 hybrid contribution 1.435 0.343 -0.435 1.538 sum -16.793 10.463 -3.554 20.102 Atomic orbital electron populations 1.20284 0.81237 1.05191 1.04816 1.26395 0.96610 0.78729 0.99795 1.70486 1.02072 1.30263 1.18876 1.23205 0.95274 0.92856 1.04609 1.23328 0.83592 0.95242 1.08761 1.19584 0.89489 0.99095 0.84196 1.56016 1.63484 1.56139 1.12813 1.05699 0.76676 0.73684 0.75033 1.93567 1.86846 1.85864 1.28958 1.93549 1.77002 1.48709 1.76103 1.30450 1.17540 1.11944 1.12210 1.18984 0.91808 0.91515 0.98927 1.21036 0.94144 1.05420 1.35430 0.91932 1.25077 0.99308 0.94868 0.95270 1.69962 1.29975 1.11082 1.41767 0.86406 0.82978 0.78724 0.79123 1.19627 1.20800 1.20791 1.84434 1.16589 1.37652 1.69419 0.88808 0.88055 0.89209 0.79445 0.87883 0.88132 0.75136 0.86162 0.85842 0.94745 0.94718 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.19 1.99 8.34 -12.95 -0.11 1.88 16 3 N -0.49 -5.75 11.29 -11.10 -0.13 -5.88 16 4 C -0.02 -0.21 11.80 -17.77 -0.21 -0.42 16 5 C -0.05 -0.61 6.78 -35.69 -0.24 -0.86 16 6 C 0.20 2.15 6.68 -5.20 -0.03 2.12 16 7 N -1.13 -13.91 5.88 -11.66 -0.07 -13.98 16 8 S 2.59 43.83 5.46 -107.50 -0.59 43.24 16 9 O -0.96 -19.37 18.08 -57.54 -1.04 -20.41 16 10 O -0.96 -19.21 17.50 -57.54 -1.01 -20.22 16 11 C -0.59 -10.43 6.01 37.16 0.22 -10.21 16 12 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 13 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 17 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 O -0.19 -2.33 10.78 5.35 0.06 -2.27 16 22 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.19 1.50 8.06 -52.49 -0.42 1.08 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.10 7.69 -51.93 -0.40 0.70 16 28 H 0.42 4.59 8.61 -34.48 -0.30 4.29 16 29 H 0.12 1.83 8.14 -51.93 -0.42 1.40 16 30 H 0.12 1.95 8.14 -51.92 -0.42 1.52 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -36.65 308.35 -6.99 -43.64 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -4.04 Total: 0.52 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -0.54 Total: -19.75 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.54 Total: -45.23 kcal Atomic # 8 Polarization: -40.91 SS G_CDS: -1.99 Total: -42.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: 43.83 SS G_CDS: -0.59 Total: 43.24 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.65 -6.99 -43.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309574840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.652 kcal (2) G-P(sol) polarization free energy of solvation -36.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds