Wall clock time and date at job start Mon Mar 30 2020 01:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30248 * 125.62248 * 2 1 4 4 C 1.34478 * 108.70639 * 179.73396 * 3 2 1 5 5 C 1.34330 * 107.66489 * 0.39184 * 4 3 2 6 6 C 1.50701 * 126.44361 * 179.87721 * 5 4 3 7 7 N 1.46495 * 109.47031 * 89.71458 * 6 5 4 8 8 S 1.65608 * 119.99695 * 165.00069 * 7 6 5 9 9 O 1.42102 * 104.27363 * 181.06921 * 8 7 6 10 10 O 1.42097 * 104.27711 * 308.92535 * 8 7 6 11 11 C 1.81401 * 104.44945 * 64.99881 * 8 7 6 12 12 C 1.52998 * 109.46866 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.46802 * 179.97438 * 12 11 8 14 14 H 1.08008 * 120.00279 * 0.02562 * 13 12 11 15 15 C 1.37882 * 120.00102 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99722 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00187 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47064 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46991 * 119.99857 * 17 15 13 20 20 H 1.48502 * 109.47212 * 239.99901 * 17 15 13 21 21 O 1.33971 * 125.61860 * 179.97438 * 2 1 3 22 22 H 1.09000 * 109.47145 * 270.02351 * 1 2 3 23 23 H 1.09002 * 109.46782 * 30.02555 * 1 2 3 24 24 H 1.09004 * 109.46674 * 150.02300 * 1 2 3 25 25 H 1.07993 * 126.17107 * 180.26941 * 4 3 2 26 26 H 1.09000 * 109.46835 * 329.70931 * 6 5 4 27 27 H 1.09003 * 109.47042 * 209.71871 * 6 5 4 28 28 H 0.96999 * 120.00130 * 344.99832 * 7 6 5 29 29 H 1.08996 * 109.47000 * 300.00248 * 11 8 7 30 30 H 1.09006 * 109.46904 * 59.99979 * 11 8 7 31 31 H 1.08993 * 109.47317 * 300.00064 * 12 11 8 32 32 H 1.08998 * 109.47275 * 60.00757 * 12 11 8 33 33 H 0.96992 * 119.99792 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6675 0.0059 5 6 3.5698 -0.6757 0.0009 6 6 4.7937 -1.5550 0.0019 7 7 5.1893 -1.8395 1.3835 8 16 6.2574 -3.0640 1.7034 9 8 6.3805 -3.0607 3.1190 10 8 5.7197 -4.1863 1.0174 11 6 7.8071 -2.5269 0.9284 12 6 8.8862 -3.5870 1.1577 13 6 10.1734 -3.1411 0.5134 14 1 10.2176 -2.1957 -0.0072 15 6 11.2948 -3.9398 0.5884 16 7 11.2409 -5.0911 1.2218 17 14 12.8906 -3.3867 -0.2096 18 1 12.6894 -2.0639 -0.8539 19 1 13.9496 -3.2765 0.8257 20 1 13.3017 -4.3796 -1.2345 21 8 2.2873 -1.0891 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5135 25 1 4.4157 1.3161 0.0115 26 1 5.6084 -1.0443 -0.5115 27 1 4.5699 -2.4899 -0.5119 28 1 4.8257 -1.3108 2.1108 29 1 7.6507 -2.3926 -0.1418 30 1 8.1261 -1.5828 1.3703 31 1 9.0425 -3.7209 2.2280 32 1 8.5675 -4.5312 0.7161 33 1 12.0298 -5.6528 1.2749 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001309574840.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:42 Heat of formation + Delta-G solvation = -91.470806 kcal Electronic energy + Delta-G solvation = -18564.300749 eV Core-core repulsion = 15331.523839 eV Total energy + Delta-G solvation = -3232.776911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.38082 -38.20873 -37.07802 -36.70092 -35.86974 -35.82030 -33.10377 -32.90265 -29.60146 -27.57324 -25.96155 -23.59745 -23.32883 -22.13057 -20.41191 -19.18710 -18.62435 -18.11362 -17.65452 -17.19420 -17.06098 -16.51101 -16.10257 -15.53899 -15.23287 -14.96181 -14.53429 -14.41738 -13.94563 -13.78415 -13.68939 -13.36792 -13.22144 -13.12911 -13.02252 -12.93488 -12.75359 -12.34166 -12.22045 -12.09452 -11.74250 -11.61871 -11.19166 -10.63590 -10.53747 -9.81435 -8.24279 -6.37677 -0.75775 0.33214 1.43260 1.43458 1.55475 1.56688 1.64053 1.93522 2.39767 2.80192 3.09888 3.11297 3.25531 3.61373 3.92536 4.04501 4.13092 4.16296 4.29903 4.61950 4.63640 4.64474 4.67244 4.81189 4.99372 5.03256 5.31055 5.32482 5.36256 5.71353 5.93253 6.08427 6.66994 6.77161 7.32704 8.88215 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.034676 B = 0.003669 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.288628 B = 7630.472982 C = 8122.736674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.192 3.808 3 N -0.517 5.517 4 C -0.017 4.017 5 C -0.072 4.072 6 C 0.195 3.805 7 N -1.111 6.111 8 S 2.621 3.379 9 O -0.998 6.998 10 O -0.997 6.997 11 C -0.583 4.583 12 C 0.017 3.983 13 C -0.535 4.535 14 H 0.080 0.920 15 C -0.006 4.006 16 N -0.936 5.936 17 Si 0.973 3.027 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.280 1.280 21 O -0.213 6.213 22 H 0.108 0.892 23 H 0.114 0.886 24 H 0.104 0.896 25 H 0.212 0.788 26 H 0.140 0.860 27 H 0.095 0.905 28 H 0.424 0.576 29 H 0.152 0.848 30 H 0.149 0.851 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.297 12.796 -4.741 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.015 4.015 3 N -0.247 5.247 4 C -0.156 4.156 5 C -0.126 4.126 6 C 0.070 3.930 7 N -0.872 5.872 8 S 2.718 3.282 9 O -0.988 6.988 10 O -0.986 6.986 11 C -0.716 4.716 12 C -0.022 4.022 13 C -0.574 4.574 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.797 3.203 18 H -0.177 1.177 19 H -0.207 1.207 20 H -0.206 1.206 21 O -0.101 6.101 22 H 0.127 0.873 23 H 0.133 0.867 24 H 0.123 0.877 25 H 0.229 0.771 26 H 0.158 0.842 27 H 0.113 0.887 28 H 0.260 0.740 29 H 0.170 0.830 30 H 0.167 0.833 31 H 0.024 0.976 32 H 0.027 0.973 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.636 12.300 -4.358 22.751 hybrid contribution 1.422 -0.282 -0.055 1.451 sum -17.214 12.018 -4.413 21.453 Atomic orbital electron populations 1.20569 0.78317 1.06581 1.06159 1.27373 0.98133 0.78094 0.97882 1.70532 1.02796 1.31005 1.20347 1.23636 0.95735 0.93014 1.03239 1.23380 0.83492 0.95478 1.10240 1.19919 0.90744 0.99491 0.82837 1.55498 1.62168 1.55144 1.14345 1.04518 0.76497 0.73557 0.73600 1.93513 1.87451 1.86610 1.31232 1.93507 1.77623 1.50993 1.76518 1.30311 1.15821 1.10626 1.14793 1.18855 0.93820 0.92773 0.96786 1.21580 0.94980 1.05892 1.34986 0.90221 1.26117 1.03460 0.94895 0.95916 1.70109 1.31138 1.12648 1.43657 0.85273 0.78063 0.78940 0.78011 1.17685 1.20686 1.20575 1.84438 1.17223 1.38568 1.69868 0.87319 0.86745 0.87691 0.77140 0.84209 0.88673 0.74017 0.83034 0.83289 0.97582 0.97327 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.19 3.68 8.34 88.34 0.74 4.42 16 3 N -0.52 -11.32 11.29 -303.83 -3.43 -14.75 16 4 C -0.02 -0.32 11.80 83.39 0.98 0.66 16 5 C -0.07 -1.48 6.78 24.79 0.17 -1.31 16 6 C 0.20 3.69 6.68 85.63 0.57 4.27 16 7 N -1.11 -25.38 5.88 -190.80 -1.12 -26.51 16 8 S 2.62 87.15 5.46 -56.49 -0.31 86.85 16 9 O -1.00 -40.36 18.08 -127.65 -2.31 -42.67 16 10 O -1.00 -39.84 17.50 -127.65 -2.23 -42.08 16 11 C -0.58 -19.78 6.01 71.98 0.43 -19.35 16 12 C 0.02 0.83 4.98 29.85 0.15 0.98 16 13 C -0.54 -28.56 9.11 25.60 0.23 -28.33 16 14 H 0.08 3.87 7.74 -2.91 -0.02 3.84 16 15 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 16 N -0.94 -56.18 13.29 21.45 0.28 -55.89 16 17 Si 0.97 42.38 29.54 68.60 2.03 44.40 16 18 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 O -0.21 -4.84 10.78 -3.77 -0.04 -4.88 16 22 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.21 2.75 8.06 -2.91 -0.02 2.72 16 26 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.10 1.93 7.69 -2.39 -0.02 1.92 16 28 H 0.42 8.60 8.61 -96.74 -0.83 7.76 16 29 H 0.15 4.16 8.14 -2.39 -0.02 4.14 16 30 H 0.15 4.29 8.14 -2.39 -0.02 4.28 16 31 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.27 14.96 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -80.49 308.35 -2.35 -82.84 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: 0.30 Total: 11.00 kcal Atomic # 6 Polarization: -42.79 SS G_CDS: 4.49 Total: -38.30 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -4.27 Total: -97.15 kcal Atomic # 8 Polarization: -85.05 SS G_CDS: -4.58 Total: -89.63 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.40 kcal Atomic # 16 Polarization: 87.15 SS G_CDS: -0.31 Total: 86.85 kcal Total: -80.49 -2.35 -82.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001309574840.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.636 kcal (2) G-P(sol) polarization free energy of solvation -80.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds