Wall clock time and date at job start Mon Mar 30 2020 01:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36883 * 126.40238 * 2 1 4 4 C 1.50699 * 126.58780 * 359.94603 * 3 2 1 5 5 O 1.42897 * 109.47109 * 179.97438 * 4 3 2 6 6 C 1.34666 * 106.81734 * 179.97438 * 3 2 1 7 7 N 1.34126 * 108.02240 * 359.97438 * 6 3 2 8 8 C 1.30494 * 109.25549 * 0.02562 * 7 6 3 9 9 S 1.76204 * 125.64798 * 180.26304 * 8 7 6 10 10 O 1.42102 * 104.27551 * 25.76378 * 9 8 7 11 11 O 1.42095 * 104.27693 * 153.62130 * 9 8 7 12 12 C 1.81399 * 104.44898 * 269.69078 * 9 8 7 13 13 C 1.53006 * 109.46969 * 179.97438 * 12 9 8 14 14 C 1.50702 * 109.47050 * 180.02562 * 13 12 9 15 15 H 1.07999 * 120.00229 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99898 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00095 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99889 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46869 * 90.00288 * 18 16 14 20 20 H 1.48503 * 109.46822 * 210.00222 * 18 16 14 21 21 H 1.48496 * 109.47177 * 330.00160 * 18 16 14 22 22 H 1.08998 * 109.47117 * 270.02805 * 1 2 3 23 23 H 1.08998 * 109.46803 * 30.02036 * 1 2 3 24 24 H 1.08998 * 109.47357 * 150.02442 * 1 2 3 25 25 H 1.09000 * 109.47567 * 299.99940 * 4 3 2 26 26 H 1.09002 * 109.47296 * 59.99513 * 4 3 2 27 27 H 0.96703 * 113.99793 * 179.97438 * 5 4 3 28 28 H 1.07999 * 125.98413 * 180.02562 * 6 3 2 29 29 H 1.09001 * 109.47466 * 299.99729 * 12 9 8 30 30 H 1.09000 * 109.47210 * 60.00606 * 12 9 8 31 31 H 1.09001 * 109.46856 * 300.00165 * 13 12 9 32 32 H 1.08996 * 109.47011 * 60.00044 * 13 12 9 33 33 H 0.96989 * 120.00285 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 1.8365 2.5428 -0.0011 5 8 2.9855 3.3924 -0.0001 6 6 3.5461 0.6503 0.0006 7 7 3.5095 -0.6904 0.0015 8 6 2.2663 -1.0870 0.0009 9 16 1.7231 -2.7632 0.0083 10 8 2.7937 -3.4759 0.6128 11 8 0.4402 -2.7132 0.6173 12 6 1.5781 -3.1998 -1.7464 13 6 1.1085 -4.6504 -1.8739 14 6 0.9886 -5.0133 -3.3316 15 1 1.2235 -4.2823 -4.0912 16 6 0.5781 -6.2782 -3.6957 17 7 0.4731 -6.5948 -4.9678 18 14 0.1712 -7.5423 -2.3819 19 1 -1.2686 -7.4457 -2.0313 20 1 0.4650 -8.9037 -2.8971 21 1 0.9936 -7.2823 -1.1731 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5134 25 1 1.2395 2.7395 -0.8917 26 1 1.2381 2.7404 0.8882 27 1 2.7764 4.3366 -0.0012 28 1 4.4369 1.2610 0.0011 29 1 0.8554 -2.5400 -2.2265 30 1 2.5488 -3.0888 -2.2298 31 1 1.8315 -5.3099 -1.3938 32 1 0.1380 -4.7619 -1.3904 33 1 0.1846 -7.4847 -5.2239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320399907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:05 Heat of formation + Delta-G solvation = -56.740434 kcal Electronic energy + Delta-G solvation = -19165.771075 eV Core-core repulsion = 15934.500186 eV Total energy + Delta-G solvation = -3231.270889 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.34743 -37.29192 -36.96116 -35.73182 -34.27386 -34.03900 -31.56545 -31.02699 -27.27054 -26.48555 -25.96301 -22.55006 -21.16203 -20.53314 -18.83038 -17.83653 -17.81646 -17.05383 -16.49893 -15.71169 -15.60531 -15.37986 -14.82096 -14.63428 -14.33056 -14.06719 -13.76269 -13.18982 -13.01396 -12.83984 -12.37684 -11.97278 -11.87291 -11.69094 -11.42325 -11.31249 -11.30152 -10.89372 -10.50055 -10.26919 -10.18101 -9.83793 -9.74203 -9.44549 -8.79010 -8.69751 -6.19736 -4.22103 0.20907 1.37688 2.27017 2.73766 3.02652 3.24503 3.32749 3.36573 3.68961 4.04749 4.17451 4.32993 4.49155 4.52023 4.67863 4.81533 4.95215 4.98984 5.11836 5.23789 5.39467 5.45250 5.53195 5.89855 6.15690 6.47660 6.62842 6.72683 6.85985 7.06649 7.48528 7.63029 8.31902 8.80942 9.38868 10.92434 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.033299 B = 0.004613 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.656900 B = 6068.678943 C = 6247.511411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.402 5.402 3 C -0.004 4.004 4 C 0.158 3.842 5 O -0.559 6.559 6 C -0.004 4.004 7 N -0.399 5.399 8 C -0.322 4.322 9 S 2.497 3.503 10 O -0.912 6.912 11 O -0.940 6.940 12 C -0.548 4.548 13 C -0.008 4.008 14 C -0.521 4.521 15 H 0.079 0.921 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.868 3.132 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.260 1.260 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.390 0.610 28 H 0.184 0.816 29 H 0.128 0.872 30 H 0.138 0.862 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.337 19.182 9.454 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.085 5.085 3 C -0.124 4.124 4 C 0.079 3.921 5 O -0.365 6.365 6 C -0.158 4.158 7 N -0.118 5.118 8 C -0.658 4.658 9 S 2.672 3.328 10 O -0.908 6.908 11 O -0.937 6.937 12 C -0.683 4.683 13 C -0.048 4.048 14 C -0.560 4.560 15 H 0.097 0.903 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.694 3.306 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.184 1.184 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.125 0.875 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.239 0.761 28 H 0.201 0.799 29 H 0.146 0.854 30 H 0.156 0.844 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.711 17.505 10.132 20.238 hybrid contribution -1.029 1.106 -0.051 1.511 sum -1.741 18.611 10.081 21.237 Atomic orbital electron populations 1.22529 0.74902 1.05882 1.05607 1.44858 1.07821 1.04709 1.51079 1.21208 0.92138 0.89638 1.09410 1.20015 0.87362 0.84036 1.00712 1.86422 1.31661 1.20662 1.97742 1.22428 0.96437 0.90518 1.06408 1.70289 1.17197 1.12236 1.12085 1.37054 0.93111 1.15054 1.20612 1.06364 0.74461 0.71536 0.80392 1.93578 1.55083 1.67565 1.74621 1.93534 1.39977 1.84961 1.75187 1.30010 1.11754 1.09550 1.16992 1.19512 0.97012 0.86886 1.01342 1.20793 1.47070 0.99157 0.89020 0.90253 1.24964 0.94472 0.98102 0.95408 1.69867 1.46620 1.21111 1.15513 0.86937 0.79688 0.81260 0.82685 1.19642 1.20668 1.18431 0.88723 0.89007 0.87525 0.91677 0.91793 0.76124 0.79915 0.85375 0.84419 0.94357 0.95010 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 9.95 59.85 0.60 1.10 16 2 N -0.40 -5.40 3.15 -120.38 -0.38 -5.78 16 3 C 0.00 -0.06 6.93 -81.60 -0.57 -0.62 16 4 C 0.16 1.19 7.16 36.01 0.26 1.45 16 5 O -0.56 -4.10 12.99 -35.23 -0.46 -4.55 16 6 C 0.00 -0.06 11.22 -17.81 -0.20 -0.26 16 7 N -0.40 -7.15 11.22 -13.85 -0.16 -7.31 16 8 C -0.32 -5.37 7.56 -90.38 -0.68 -6.05 16 9 S 2.50 44.24 5.12 -107.50 -0.55 43.69 16 10 O -0.91 -19.21 17.93 -57.54 -1.03 -20.24 16 11 O -0.94 -16.70 15.64 -57.54 -0.90 -17.60 16 12 C -0.55 -9.92 5.92 37.16 0.22 -9.70 16 13 C -0.01 -0.19 4.05 -27.88 -0.11 -0.30 16 14 C -0.52 -14.17 9.66 -34.44 -0.33 -14.50 16 15 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 17 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 18 Si 0.87 20.87 27.47 -169.99 -4.67 16.20 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 22 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.09 0.54 7.89 -51.93 -0.41 0.13 16 24 H 0.11 1.06 6.75 -51.93 -0.35 0.71 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.39 0.74 9.12 45.56 0.42 1.15 16 28 H 0.18 2.35 7.87 -52.49 -0.41 1.94 16 29 H 0.13 1.98 8.14 -51.92 -0.42 1.56 16 30 H 0.14 2.38 8.14 -51.92 -0.42 1.96 16 31 H 0.04 0.88 7.20 -51.93 -0.37 0.50 16 32 H 0.03 0.69 7.57 -51.93 -0.39 0.30 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 299.55 15.07 4.51 4.51 Total: -1.00 -37.14 299.55 -7.00 -44.14 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.22 Total: -0.40 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: -0.92 Total: -26.92 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.24 Total: -38.83 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -2.39 Total: -42.39 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Atomic # 16 Polarization: 44.24 SS G_CDS: -0.55 Total: 43.69 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -37.14 -7.00 -44.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320399907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.600 kcal (2) G-P(sol) polarization free energy of solvation -37.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds