Wall clock time and date at job start Mon Mar 30 2020 01:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36883 * 126.40238 * 2 1 4 4 C 1.50699 * 126.58780 * 359.94603 * 3 2 1 5 5 O 1.42897 * 109.47109 * 179.97438 * 4 3 2 6 6 C 1.34666 * 106.81734 * 179.97438 * 3 2 1 7 7 N 1.34126 * 108.02240 * 359.97438 * 6 3 2 8 8 C 1.30494 * 109.25549 * 0.02562 * 7 6 3 9 9 S 1.76204 * 125.64798 * 180.26304 * 8 7 6 10 10 O 1.42102 * 104.27551 * 25.76378 * 9 8 7 11 11 O 1.42095 * 104.27693 * 153.62130 * 9 8 7 12 12 C 1.81399 * 104.44898 * 269.69078 * 9 8 7 13 13 C 1.53006 * 109.46969 * 179.97438 * 12 9 8 14 14 C 1.50702 * 109.47050 * 180.02562 * 13 12 9 15 15 H 1.07999 * 120.00229 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99898 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00095 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99889 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46869 * 90.00288 * 18 16 14 20 20 H 1.48503 * 109.46822 * 210.00222 * 18 16 14 21 21 H 1.48496 * 109.47177 * 330.00160 * 18 16 14 22 22 H 1.08998 * 109.47117 * 270.02805 * 1 2 3 23 23 H 1.08998 * 109.46803 * 30.02036 * 1 2 3 24 24 H 1.08998 * 109.47357 * 150.02442 * 1 2 3 25 25 H 1.09000 * 109.47567 * 299.99940 * 4 3 2 26 26 H 1.09002 * 109.47296 * 59.99513 * 4 3 2 27 27 H 0.96703 * 113.99793 * 179.97438 * 5 4 3 28 28 H 1.07999 * 125.98413 * 180.02562 * 6 3 2 29 29 H 1.09001 * 109.47466 * 299.99729 * 12 9 8 30 30 H 1.09000 * 109.47210 * 60.00606 * 12 9 8 31 31 H 1.09001 * 109.46856 * 300.00165 * 13 12 9 32 32 H 1.08996 * 109.47011 * 60.00044 * 13 12 9 33 33 H 0.96989 * 120.00285 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 1.8365 2.5428 -0.0011 5 8 2.9855 3.3924 -0.0001 6 6 3.5461 0.6503 0.0006 7 7 3.5095 -0.6904 0.0015 8 6 2.2663 -1.0870 0.0009 9 16 1.7231 -2.7632 0.0083 10 8 2.7937 -3.4759 0.6128 11 8 0.4402 -2.7132 0.6173 12 6 1.5781 -3.1998 -1.7464 13 6 1.1085 -4.6504 -1.8739 14 6 0.9886 -5.0133 -3.3316 15 1 1.2235 -4.2823 -4.0912 16 6 0.5781 -6.2782 -3.6957 17 7 0.4731 -6.5948 -4.9678 18 14 0.1712 -7.5423 -2.3819 19 1 -1.2686 -7.4457 -2.0313 20 1 0.4650 -8.9037 -2.8971 21 1 0.9936 -7.2823 -1.1731 22 1 -0.3633 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5141 24 1 -0.3634 -0.8902 -0.5134 25 1 1.2395 2.7395 -0.8917 26 1 1.2381 2.7404 0.8882 27 1 2.7764 4.3366 -0.0012 28 1 4.4369 1.2610 0.0011 29 1 0.8554 -2.5400 -2.2265 30 1 2.5488 -3.0888 -2.2298 31 1 1.8315 -5.3099 -1.3938 32 1 0.1380 -4.7619 -1.3904 33 1 0.1846 -7.4847 -5.2239 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320399907.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:05 Heat of formation + Delta-G solvation = -88.438502 kcal Electronic energy + Delta-G solvation = -19167.145606 eV Core-core repulsion = 15934.500186 eV Total energy + Delta-G solvation = -3232.645420 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.39979 -38.40540 -37.80361 -37.21897 -35.93327 -35.28627 -33.51912 -31.93263 -28.14460 -27.99892 -27.11148 -23.85890 -22.81542 -21.51868 -20.15726 -19.37107 -18.64981 -18.34792 -17.59716 -17.12319 -16.80972 -16.59848 -16.29269 -15.56918 -15.44390 -15.30534 -14.95201 -14.79779 -14.06727 -13.88501 -13.80714 -13.36961 -13.13564 -13.11405 -13.08282 -13.04362 -12.60402 -12.24560 -11.95565 -11.70995 -11.45066 -11.36618 -11.28529 -10.82184 -10.81900 -9.81042 -8.34270 -6.41062 -1.19091 0.30631 1.32948 1.35756 1.38923 1.48655 1.60266 1.73071 2.32649 2.66420 2.96159 3.00080 3.14012 3.61779 3.81103 3.83954 3.88123 4.06753 4.22113 4.25921 4.42420 4.52016 4.52189 4.63663 4.98430 5.03054 5.05665 5.46227 5.46868 5.62789 6.17334 6.49510 6.65149 6.90897 7.23373 8.81193 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.033299 B = 0.004613 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.656900 B = 6068.678943 C = 6247.511411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.395 5.395 3 C 0.019 3.981 4 C 0.159 3.841 5 O -0.580 6.580 6 C -0.037 4.037 7 N -0.437 5.437 8 C -0.354 4.354 9 S 2.530 3.470 10 O -0.952 6.952 11 O -0.941 6.941 12 C -0.551 4.551 13 C -0.018 4.018 14 C -0.528 4.528 15 H 0.049 0.951 16 C 0.016 3.984 17 N -0.940 5.940 18 Si 0.924 3.076 19 H -0.255 1.255 20 H -0.277 1.277 21 H -0.247 1.247 22 H 0.107 0.893 23 H 0.136 0.864 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.414 0.586 28 H 0.193 0.807 29 H 0.153 0.847 30 H 0.139 0.861 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.773 21.300 10.891 24.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.078 5.078 3 C -0.103 4.103 4 C 0.080 3.920 5 O -0.390 6.390 6 C -0.190 4.190 7 N -0.157 5.157 8 C -0.691 4.691 9 S 2.707 3.293 10 O -0.948 6.948 11 O -0.938 6.938 12 C -0.685 4.685 13 C -0.057 4.057 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.183 4.183 17 N -0.580 5.580 18 Si 0.747 3.253 19 H -0.179 1.179 20 H -0.203 1.203 21 H -0.171 1.171 22 H 0.125 0.875 23 H 0.155 0.845 24 H 0.118 0.882 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.267 0.733 28 H 0.210 0.790 29 H 0.171 0.829 30 H 0.157 0.843 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.186 19.600 11.571 22.866 hybrid contribution -0.558 0.689 -0.534 1.034 sum -2.744 20.289 11.037 23.259 Atomic orbital electron populations 1.22985 0.72575 1.07892 1.07085 1.45091 1.09146 1.03979 1.49557 1.22036 0.91193 0.91725 1.05389 1.20259 0.87573 0.80800 1.03348 1.86370 1.32156 1.22602 1.97878 1.22791 0.98356 0.89745 1.08155 1.70180 1.18347 1.14185 1.12972 1.36279 0.93607 1.15150 1.24098 1.05035 0.73585 0.71491 0.79162 1.93524 1.56515 1.69584 1.75213 1.93517 1.39940 1.85422 1.74894 1.29939 1.12506 1.07352 1.18691 1.19475 0.97931 0.89817 0.98483 1.21102 1.46094 0.98649 0.90915 0.93229 1.25855 0.94555 1.00424 0.97485 1.70000 1.48353 1.21909 1.17688 0.86033 0.80465 0.78559 0.80283 1.17923 1.20261 1.17083 0.87491 0.84546 0.88179 0.88723 0.88947 0.73344 0.78972 0.82922 0.84279 0.94584 0.93496 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.95 127.77 1.27 1.81 16 2 N -0.40 -9.64 3.15 -534.77 -1.69 -11.33 16 3 C 0.02 0.41 6.93 40.95 0.28 0.70 16 4 C 0.16 1.67 7.16 71.24 0.51 2.18 16 5 O -0.58 -6.41 12.99 -148.98 -1.94 -8.35 16 6 C -0.04 -1.06 11.22 83.52 0.94 -0.12 16 7 N -0.44 -15.66 11.22 -197.74 -2.22 -17.87 16 8 C -0.35 -11.54 7.56 180.26 1.36 -10.18 16 9 S 2.53 88.44 5.12 -56.49 -0.29 88.15 16 10 O -0.95 -40.54 17.93 -127.65 -2.29 -42.83 16 11 O -0.94 -32.12 15.64 -127.65 -2.00 -34.12 16 12 C -0.55 -19.80 5.92 71.98 0.43 -19.38 16 13 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 14 C -0.53 -29.19 9.66 25.60 0.25 -28.94 16 15 H 0.05 2.94 7.99 -2.91 -0.02 2.92 16 16 C 0.02 0.88 5.47 84.66 0.46 1.35 16 17 N -0.94 -57.00 13.96 21.45 0.30 -56.70 16 18 Si 0.92 42.54 27.47 68.60 1.88 44.42 16 19 H -0.25 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 22 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.14 0.88 7.89 -2.39 -0.02 0.86 16 24 H 0.10 1.72 6.75 -2.39 -0.02 1.71 16 25 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.41 -0.05 9.12 -74.06 -0.68 -0.72 16 28 H 0.19 4.83 7.87 -2.91 -0.02 4.81 16 29 H 0.15 4.60 8.14 -2.39 -0.02 4.58 16 30 H 0.14 4.91 8.14 -2.39 -0.02 4.90 16 31 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 32 H 0.05 1.97 7.57 -2.39 -0.02 1.95 16 33 H 0.27 15.26 8.31 -92.72 -0.77 14.49 16 Total: -1.00 -82.39 299.55 -2.20 -84.59 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: 0.41 Total: 7.31 kcal Atomic # 6 Polarization: -58.89 SS G_CDS: 5.62 Total: -53.27 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.61 Total: -85.90 kcal Atomic # 8 Polarization: -79.08 SS G_CDS: -6.22 Total: -85.30 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.88 Total: 44.42 kcal Atomic # 16 Polarization: 88.44 SS G_CDS: -0.29 Total: 88.15 kcal Total: -82.39 -2.20 -84.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320399907.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.846 kcal (2) G-P(sol) polarization free energy of solvation -82.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds