Wall clock time and date at job start Mon Mar 30 2020 01:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34337 * 126.44011 * 2 1 4 4 N 1.34474 * 107.66465 * 179.77022 * 3 2 1 5 5 C 1.30251 * 108.70522 * 0.42830 * 4 3 2 6 6 C 1.50703 * 125.62341 * 179.83963 * 5 4 3 7 7 N 1.46498 * 109.47212 * 89.68852 * 6 5 4 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42109 * 104.27511 * 181.34803 * 8 7 6 10 10 O 1.42098 * 104.28120 * 309.20801 * 8 7 6 11 11 C 1.81394 * 104.44973 * 65.28269 * 8 7 6 12 12 C 1.53003 * 109.47387 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.47138 * 179.97438 * 12 11 8 14 14 H 1.08001 * 119.99608 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47153 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47258 * 119.99892 * 17 15 13 20 20 H 1.48501 * 109.47187 * 240.00056 * 17 15 13 21 21 O 1.33971 * 108.76057 * 359.57238 * 5 4 3 22 22 H 1.09004 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47288 * 299.99092 * 1 2 3 24 24 H 1.08995 * 109.47540 * 59.99497 * 1 2 3 25 25 H 1.07997 * 126.16677 * 0.03649 * 3 2 1 26 26 H 1.08996 * 109.47013 * 329.69158 * 6 5 4 27 27 H 1.08999 * 109.47128 * 209.69371 * 6 5 4 28 28 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 29 29 H 1.09009 * 109.47044 * 299.99503 * 11 8 7 30 30 H 1.09001 * 109.47747 * 59.99183 * 11 8 7 31 31 H 1.08994 * 109.46789 * 299.99279 * 12 11 8 32 32 H 1.08993 * 109.47045 * 59.99537 * 12 11 8 33 33 H 0.97007 * 119.99442 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6479 0.0051 5 6 3.5765 -0.6546 -0.0010 6 6 4.8005 -1.5338 -0.0016 7 7 5.1976 -1.8192 1.3793 8 16 6.2607 -3.0482 1.6980 9 8 6.3816 -3.0487 3.1139 10 8 5.7202 -4.1669 1.0084 11 6 7.8136 -2.5147 0.9269 12 6 8.8885 -3.5793 1.1553 13 6 10.1785 -3.1363 0.5142 14 1 10.2265 -2.1903 -0.0047 15 6 11.2971 -3.9387 0.5900 16 7 11.2385 -5.0904 1.2222 17 14 12.8961 -3.3894 -0.2041 18 1 12.7000 -2.0655 -0.8476 19 1 13.9534 -3.2843 0.8333 20 1 13.3060 -4.3819 -1.2298 21 8 2.3075 -1.0840 -0.0007 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.9821 2.1113 0.0006 26 1 5.6146 -1.0229 -0.5156 27 1 4.5762 -2.4684 -0.5157 28 1 4.8346 -1.2909 2.1074 29 1 7.6594 -2.3774 -0.1434 30 1 8.1352 -1.5729 1.3714 31 1 9.0427 -3.7161 2.2256 32 1 8.5671 -4.5213 0.7111 33 1 12.0257 -5.6548 1.2759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322351261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:15 Heat of formation + Delta-G solvation = -59.295352 kcal Electronic energy + Delta-G solvation = -18559.888558 eV Core-core repulsion = 15328.506880 eV Total energy + Delta-G solvation = -3231.381678 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.60310 -36.70731 -35.81790 -35.47217 -34.88540 -33.90905 -32.60511 -31.18093 -28.46787 -25.62293 -25.33362 -22.56279 -21.72012 -21.35333 -19.12840 -17.90581 -17.40409 -16.88122 -16.41397 -15.94939 -15.55735 -14.91669 -14.78313 -14.53845 -14.38807 -13.60048 -13.53500 -13.35204 -13.24811 -12.70461 -12.51986 -11.84353 -11.77332 -11.66309 -11.58263 -11.53099 -11.09735 -10.97611 -10.79702 -10.43821 -10.40303 -9.90645 -9.60568 -9.11242 -8.99577 -8.51126 -6.13158 -4.18674 0.61750 1.14835 2.32215 2.35855 3.12313 3.25712 3.33189 3.36644 3.69072 4.18088 4.37281 4.43158 4.62660 4.68018 4.76996 4.93233 4.99030 5.17722 5.22367 5.27071 5.44394 5.55540 5.63157 5.75470 5.78640 6.00318 6.46050 6.87613 7.28982 7.34558 7.44948 7.80303 8.16329 8.85158 9.46394 10.97880 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.034857 B = 0.003674 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.078924 B = 7618.533363 C = 8106.146617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.044 4.044 3 C -0.046 4.046 4 N -0.464 5.464 5 C 0.182 3.818 6 C 0.217 3.783 7 N -1.126 6.126 8 S 2.592 3.408 9 O -0.960 6.960 10 O -0.963 6.963 11 C -0.587 4.587 12 C 0.027 3.973 13 C -0.520 4.520 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 O -0.193 6.193 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.185 0.815 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.417 0.583 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.034 0.966 32 H 0.035 0.965 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.502 11.099 -3.488 22.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 C -0.185 4.185 4 N -0.193 5.193 5 C -0.026 4.026 6 C 0.090 3.910 7 N -0.883 5.883 8 S 2.690 3.310 9 O -0.951 6.951 10 O -0.953 6.953 11 C -0.721 4.721 12 C -0.012 4.012 13 C -0.559 4.559 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 O -0.079 6.079 22 H 0.098 0.902 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.202 0.798 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.250 0.750 29 H 0.139 0.861 30 H 0.143 0.857 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.045 10.339 -3.101 21.891 hybrid contribution 0.412 0.708 -0.438 0.929 sum -18.633 11.047 -3.539 21.949 Atomic orbital electron populations 1.20305 0.83857 1.04558 1.03933 1.23593 0.95236 0.84638 1.06312 1.23114 0.87691 1.00487 1.07205 1.70468 1.23177 1.08999 1.16704 1.26063 0.84226 0.90178 1.02132 1.19547 0.88712 0.97981 0.84805 1.55971 1.63853 1.55988 1.12528 1.05702 0.76696 0.73517 0.75067 1.93571 1.86828 1.85780 1.28898 1.93550 1.76961 1.48802 1.75976 1.30451 1.17412 1.11992 1.12270 1.18990 0.91872 0.91435 0.98934 1.21045 0.94124 1.05297 1.35475 0.91890 1.25071 0.99295 0.94878 0.95281 1.69970 1.30052 1.10977 1.41849 0.86406 0.83007 0.78732 0.79097 1.19607 1.20819 1.20818 1.84450 1.17779 1.36501 1.69189 0.90205 0.89198 0.89197 0.79781 0.87076 0.87192 0.74983 0.86065 0.85725 0.94732 0.94695 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.43 36.01 0.38 0.02 16 2 C -0.04 -0.42 7.39 -35.69 -0.26 -0.68 16 3 C -0.05 -0.46 11.80 -17.77 -0.21 -0.67 16 4 N -0.46 -5.90 11.29 -11.10 -0.13 -6.02 16 5 C 0.18 2.25 7.74 -12.95 -0.10 2.15 16 6 C 0.22 2.50 6.76 -5.19 -0.04 2.46 16 7 N -1.13 -14.67 5.88 -11.66 -0.07 -14.74 16 8 S 2.59 44.44 5.46 -107.50 -0.59 43.85 16 9 O -0.96 -19.51 18.08 -57.54 -1.04 -20.55 16 10 O -0.96 -19.07 17.48 -57.54 -1.01 -20.08 16 11 C -0.59 -10.68 6.02 37.16 0.22 -10.46 16 12 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 13 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 14 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 17 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 O -0.19 -2.36 10.78 5.36 0.06 -2.30 16 22 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.19 1.26 8.06 -52.49 -0.42 0.83 16 26 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.11 1.18 7.68 -51.93 -0.40 0.78 16 28 H 0.42 4.99 8.61 -34.47 -0.30 4.69 16 29 H 0.12 1.89 8.14 -51.92 -0.42 1.47 16 30 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 31 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 308.33 15.07 4.65 4.65 Total: -1.00 -36.41 308.33 -7.01 -43.42 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -4.04 Total: 0.87 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.56 Total: -19.61 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.54 Total: -46.29 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.99 Total: -42.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 44.44 SS G_CDS: -0.59 Total: 43.85 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.41 -7.01 -43.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322351261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.878 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds