Wall clock time and date at job start Mon Mar 30 2020 01:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34337 * 126.44011 * 2 1 4 4 N 1.34474 * 107.66465 * 179.77022 * 3 2 1 5 5 C 1.30251 * 108.70522 * 0.42830 * 4 3 2 6 6 C 1.50703 * 125.62341 * 179.83963 * 5 4 3 7 7 N 1.46498 * 109.47212 * 89.68852 * 6 5 4 8 8 S 1.65602 * 119.99612 * 164.72359 * 7 6 5 9 9 O 1.42109 * 104.27511 * 181.34803 * 8 7 6 10 10 O 1.42098 * 104.28120 * 309.20801 * 8 7 6 11 11 C 1.81394 * 104.44973 * 65.28269 * 8 7 6 12 12 C 1.53003 * 109.47387 * 179.97438 * 11 8 7 13 13 C 1.50707 * 109.47138 * 179.97438 * 12 11 8 14 14 H 1.08001 * 119.99608 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99869 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99869 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00166 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47153 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47258 * 119.99892 * 17 15 13 20 20 H 1.48501 * 109.47187 * 240.00056 * 17 15 13 21 21 O 1.33971 * 108.76057 * 359.57238 * 5 4 3 22 22 H 1.09004 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47288 * 299.99092 * 1 2 3 24 24 H 1.08995 * 109.47540 * 59.99497 * 1 2 3 25 25 H 1.07997 * 126.16677 * 0.03649 * 3 2 1 26 26 H 1.08996 * 109.47013 * 329.69158 * 6 5 4 27 27 H 1.08999 * 109.47128 * 209.69371 * 6 5 4 28 28 H 0.97001 * 120.00384 * 345.00836 * 7 6 5 29 29 H 1.09009 * 109.47044 * 299.99503 * 11 8 7 30 30 H 1.09001 * 109.47747 * 59.99183 * 11 8 7 31 31 H 1.08994 * 109.46789 * 299.99279 * 12 11 8 32 32 H 1.08993 * 109.47045 * 59.99537 * 12 11 8 33 33 H 0.97007 * 119.99442 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0807 0.0000 4 7 3.5781 0.6479 0.0051 5 6 3.5765 -0.6546 -0.0010 6 6 4.8005 -1.5338 -0.0016 7 7 5.1976 -1.8192 1.3793 8 16 6.2607 -3.0482 1.6980 9 8 6.3816 -3.0487 3.1139 10 8 5.7202 -4.1669 1.0084 11 6 7.8136 -2.5147 0.9269 12 6 8.8885 -3.5793 1.1553 13 6 10.1785 -3.1363 0.5142 14 1 10.2265 -2.1903 -0.0047 15 6 11.2971 -3.9387 0.5900 16 7 11.2385 -5.0904 1.2222 17 14 12.8961 -3.3894 -0.2041 18 1 12.7000 -2.0655 -0.8476 19 1 13.9534 -3.2843 0.8333 20 1 13.3060 -4.3819 -1.2298 21 8 2.3075 -1.0840 -0.0007 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.9821 2.1113 0.0006 26 1 5.6146 -1.0229 -0.5156 27 1 4.5762 -2.4684 -0.5157 28 1 4.8346 -1.2909 2.1074 29 1 7.6594 -2.3774 -0.1434 30 1 8.1352 -1.5729 1.3714 31 1 9.0427 -3.7161 2.2256 32 1 8.5671 -4.5213 0.7111 33 1 12.0257 -5.6548 1.2759 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322351261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:14 Heat of formation + Delta-G solvation = -90.183597 kcal Electronic energy + Delta-G solvation = -18561.227973 eV Core-core repulsion = 15328.506880 eV Total energy + Delta-G solvation = -3232.721093 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.41235 -38.21948 -37.09378 -36.74552 -35.86572 -35.74179 -33.26114 -33.09832 -29.27161 -27.57016 -26.10037 -23.59428 -23.35410 -22.18572 -20.44994 -19.22785 -18.70834 -18.16770 -17.60972 -17.12704 -17.05923 -16.50431 -16.06069 -15.68397 -15.30983 -14.95816 -14.49989 -14.22530 -14.16029 -13.82239 -13.68942 -13.28744 -13.22565 -13.13842 -13.10307 -12.93168 -12.75629 -12.43823 -12.21630 -12.09711 -11.72139 -11.62995 -11.21836 -10.62966 -10.58489 -9.74236 -8.23816 -6.37025 -0.77749 0.31396 1.43396 1.43569 1.46959 1.56942 1.59696 1.94005 2.40200 2.77622 2.90549 3.10280 3.27040 3.76469 3.91836 4.04191 4.10113 4.16181 4.25403 4.48916 4.55522 4.64529 4.69831 4.81367 5.01343 5.16238 5.28113 5.31664 5.33151 5.71933 5.84827 6.09309 6.63464 6.77448 7.33178 8.88602 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.034857 B = 0.003674 C = 0.003453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.078924 B = 7618.533363 C = 8106.146617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.040 4.040 3 C -0.062 4.062 4 N -0.482 5.482 5 C 0.162 3.838 6 C 0.208 3.792 7 N -1.110 6.110 8 S 2.625 3.375 9 O -0.994 6.994 10 O -0.990 6.990 11 C -0.585 4.585 12 C 0.018 3.982 13 C -0.536 4.536 14 H 0.078 0.922 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.255 1.255 19 H -0.280 1.280 20 H -0.279 1.279 21 O -0.211 6.211 22 H 0.080 0.920 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.213 0.787 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.424 0.576 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.007 0.993 32 H 0.011 0.989 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.416 13.237 -4.680 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.094 4.094 3 C -0.201 4.201 4 N -0.213 5.213 5 C -0.045 4.045 6 C 0.082 3.918 7 N -0.871 5.871 8 S 2.723 3.277 9 O -0.985 6.985 10 O -0.980 6.980 11 C -0.718 4.718 12 C -0.021 4.021 13 C -0.575 4.575 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.797 3.203 18 H -0.179 1.179 19 H -0.206 1.206 20 H -0.205 1.205 21 O -0.097 6.097 22 H 0.099 0.901 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.229 0.771 26 H 0.153 0.847 27 H 0.134 0.866 28 H 0.259 0.741 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.967 12.488 -4.295 23.939 hybrid contribution 0.538 0.108 -0.073 0.554 sum -19.429 12.596 -4.369 23.564 Atomic orbital electron populations 1.20559 0.80783 1.05269 1.05940 1.24465 0.96856 0.83844 1.04220 1.23634 0.86899 1.02015 1.07546 1.70433 1.24772 1.09225 1.16829 1.26052 0.84489 0.90259 1.03729 1.19834 0.89636 0.98751 0.83569 1.55465 1.62646 1.55106 1.13914 1.04446 0.76327 0.73320 0.73647 1.93519 1.87381 1.86498 1.31076 1.93512 1.77428 1.50756 1.76324 1.30333 1.16071 1.10587 1.14788 1.18857 0.93730 0.92705 0.96849 1.21573 0.95068 1.05737 1.35143 0.90423 1.26097 1.03407 0.94894 0.95893 1.70111 1.31245 1.12474 1.43625 0.85278 0.78107 0.78896 0.78045 1.17877 1.20613 1.20461 1.84452 1.18107 1.37767 1.69419 0.90140 0.87208 0.86940 0.77060 0.84681 0.86617 0.74059 0.83081 0.83606 0.97473 0.97055 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.43 71.24 0.74 0.24 16 2 C -0.04 -0.69 7.39 24.79 0.18 -0.51 16 3 C -0.06 -1.12 11.80 83.40 0.98 -0.14 16 4 N -0.48 -11.50 11.29 -303.83 -3.43 -14.94 16 5 C 0.16 3.81 7.74 88.34 0.68 4.49 16 6 C 0.21 4.48 6.76 85.63 0.58 5.05 16 7 N -1.11 -27.58 5.88 -190.79 -1.12 -28.70 16 8 S 2.63 89.26 5.46 -56.49 -0.31 88.95 16 9 O -0.99 -40.76 18.08 -127.65 -2.31 -43.06 16 10 O -0.99 -39.31 17.48 -127.65 -2.23 -41.54 16 11 C -0.58 -20.71 6.02 71.98 0.43 -20.28 16 12 C 0.02 0.89 4.98 29.85 0.15 1.04 16 13 C -0.54 -29.10 9.11 25.60 0.23 -28.87 16 14 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 15 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 16 N -0.93 -56.43 13.29 21.45 0.28 -56.14 16 17 Si 0.97 42.96 29.54 68.60 2.03 44.99 16 18 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 21 O -0.21 -4.90 10.78 -3.74 -0.04 -4.94 16 22 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 23 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.11 0.35 8.14 -2.39 -0.02 0.34 16 25 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 26 H 0.14 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.12 2.34 7.68 -2.39 -0.02 2.32 16 28 H 0.42 9.66 8.61 -96.74 -0.83 8.82 16 29 H 0.15 4.39 8.14 -2.39 -0.02 4.37 16 30 H 0.15 4.53 8.14 -2.39 -0.02 4.51 16 31 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 Total: -1.00 -79.51 308.33 -2.38 -81.89 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.30 Total: 12.26 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 4.45 Total: -38.77 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.27 Total: -99.78 kcal Atomic # 8 Polarization: -84.96 SS G_CDS: -4.58 Total: -89.54 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: 89.26 SS G_CDS: -0.31 Total: 88.95 kcal Total: -79.51 -2.38 -81.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322351261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.293 kcal (2) G-P(sol) polarization free energy of solvation -79.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds