Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 S 1.81402 * 109.47264 * 179.97438 * 8 7 6 10 10 O 1.42096 * 108.57967 * 294.48623 * 9 8 7 11 11 O 1.42109 * 108.57472 * 65.50789 * 9 8 7 12 12 C 1.81394 * 101.92441 * 179.97438 * 9 8 7 13 13 C 1.50694 * 109.47331 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00449 * 0.02562 * 13 12 9 15 15 C 1.37884 * 120.00037 * 180.02562 * 13 12 9 16 16 N 1.31508 * 120.00057 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99756 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47368 * 90.00010 * 17 15 13 19 19 H 1.48503 * 109.46689 * 209.99871 * 17 15 13 20 20 H 1.48500 * 109.47164 * 329.99342 * 17 15 13 21 21 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 22 22 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 23 23 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 24 24 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 25 25 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 26 26 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 27 27 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 28 28 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 29 29 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 30 30 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 31 31 H 1.09007 * 109.47550 * 300.00532 * 12 9 8 32 32 H 1.09006 * 109.47058 * 60.00177 * 12 9 8 33 33 H 0.97002 * 120.00378 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 16 7.0190 -2.8713 -3.1529 10 8 6.0392 -3.6987 -3.7648 11 8 7.3671 -1.6378 -3.7669 12 6 8.5311 -3.8446 -2.9145 13 6 9.1057 -4.2169 -4.2569 14 1 8.6111 -3.8994 -5.1630 15 6 10.2631 -4.9629 -4.3285 16 7 10.8652 -5.3500 -3.2253 17 14 10.9757 -5.4238 -5.9926 18 1 11.9230 -4.3692 -6.4347 19 1 11.6934 -6.7191 -5.8820 20 1 9.8772 -5.5496 -6.9839 21 7 2.3030 -1.0840 -0.0002 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8897 0.5142 25 1 5.5843 -0.8849 0.5130 26 1 4.6208 -2.3815 0.5141 27 1 4.4380 -2.2655 -1.9560 28 1 5.4015 -0.7690 -1.9571 29 1 7.2990 -1.9909 -0.9292 30 1 6.3349 -3.4871 -0.9284 31 1 9.2593 -3.2543 -2.3582 32 1 8.2956 -4.7509 -2.3565 33 1 11.6792 -5.8752 -3.2756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332514317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = -22.216913 kcal Electronic energy + Delta-G solvation = -18380.156267 eV Core-core repulsion = 15150.382430 eV Total energy + Delta-G solvation = -3229.773836 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.77625 -36.47808 -36.05569 -35.79775 -35.08921 -33.36594 -32.72912 -29.54945 -29.12063 -28.16575 -24.10177 -23.61417 -22.49072 -21.30100 -18.30642 -18.12415 -17.58392 -16.93039 -16.05269 -15.87180 -15.45260 -14.80827 -14.74761 -14.23986 -14.06372 -13.88245 -13.36762 -13.02273 -12.88266 -12.50625 -12.25067 -12.15352 -12.05339 -11.56466 -11.41386 -11.24743 -11.20466 -11.12779 -11.05306 -10.91669 -10.63532 -10.31098 -9.99467 -9.78862 -9.10561 -8.72550 -6.35171 -4.44405 0.82906 0.97501 2.00293 2.59071 3.21403 3.26844 3.33235 3.40703 3.75963 3.81664 4.19708 4.34842 4.55360 4.59377 4.77113 4.82874 4.96640 5.03254 5.07479 5.13364 5.23279 5.35876 5.40268 5.57612 5.65915 5.72042 5.83011 5.91590 6.61597 6.66861 7.46454 7.73292 7.96039 8.57778 9.22940 10.76739 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.054070 B = 0.003245 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.723883 B = 8625.661119 C = 8731.093640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.389 5.389 4 O 0.077 5.923 5 C 0.189 3.811 6 C -0.022 4.022 7 C -0.107 4.107 8 C -0.632 4.632 9 S 2.392 3.608 10 O -0.956 6.956 11 O -0.957 6.957 12 C -0.402 4.402 13 C -0.530 4.530 14 H 0.072 0.928 15 C 0.075 3.925 16 N -0.882 5.882 17 Si 0.905 3.095 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.266 1.266 21 N -0.482 5.482 22 H 0.089 0.911 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.132 7.379 9.867 18.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 N -0.098 5.098 4 O 0.019 5.981 5 C -0.031 4.031 6 C -0.062 4.062 7 C -0.146 4.146 8 C -0.756 4.756 9 S 2.578 3.422 10 O -0.954 6.954 11 O -0.954 6.954 12 C -0.537 4.537 13 C -0.569 4.569 14 H 0.090 0.910 15 C -0.131 4.131 16 N -0.519 5.519 17 Si 0.731 3.269 18 H -0.199 1.199 19 H -0.207 1.207 20 H -0.191 1.191 21 N -0.216 5.216 22 H 0.108 0.892 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.108 8.097 9.202 18.689 hybrid contribution 0.969 -0.557 0.134 1.126 sum -13.139 7.540 9.336 17.794 Atomic orbital electron populations 1.20138 0.82929 1.04572 1.04405 1.25945 1.00666 0.83568 1.00499 1.74634 0.89436 1.23981 1.21736 1.85298 1.22313 1.24842 1.65600 1.28912 0.97123 0.82147 0.94964 1.20342 0.87789 0.98497 0.99554 1.21264 0.96254 1.01288 0.95829 1.30540 1.06111 1.09273 1.29706 1.08920 0.79619 0.76931 0.76742 1.93485 1.60480 1.68807 1.72592 1.93484 1.84479 1.44917 1.72532 1.27493 1.11055 1.08508 1.06623 1.20370 1.10713 1.36617 0.89175 0.90988 1.24931 0.95966 0.94548 0.97687 1.69938 1.18667 1.35831 1.27419 0.86354 0.79468 0.78124 0.82917 1.19917 1.20662 1.19067 1.71930 0.99746 1.29366 1.20597 0.89235 0.89002 0.89572 0.87322 0.86589 0.89457 0.89599 0.84947 0.84967 0.89645 0.89643 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 36.01 0.38 -0.09 16 2 C 0.17 1.97 8.22 -156.37 -1.28 0.69 16 3 N -0.39 -5.09 12.16 30.90 0.38 -4.71 16 4 O 0.08 0.97 11.31 18.11 0.20 1.17 16 5 C 0.19 2.19 7.77 -13.06 -0.10 2.09 16 6 C -0.02 -0.20 5.84 -27.88 -0.16 -0.36 16 7 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 8 C -0.63 -7.79 5.81 37.15 0.22 -7.58 16 9 S 2.39 45.65 4.64 -107.50 -0.50 45.15 16 10 O -0.96 -21.23 18.10 -57.83 -1.05 -22.27 16 11 O -0.96 -21.09 18.10 -57.83 -1.05 -22.13 16 12 C -0.40 -9.03 5.56 36.00 0.20 -8.83 16 13 C -0.53 -14.31 9.13 -34.44 -0.31 -14.62 16 14 H 0.07 1.94 7.71 -52.49 -0.40 1.54 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 16 N -0.88 -24.35 13.29 55.43 0.74 -23.61 16 17 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 N -0.48 -6.17 11.55 -9.87 -0.11 -6.28 16 22 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.13 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.13 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 32 H 0.09 1.86 8.14 -51.92 -0.42 1.44 16 33 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 309.07 15.07 4.66 4.66 Total: -1.00 -35.30 309.07 -7.25 -42.55 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.19 Total: -2.07 kcal Atomic # 6 Polarization: -26.88 SS G_CDS: -1.31 Total: -28.18 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 1.00 Total: -34.61 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -1.89 Total: -43.24 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 45.65 SS G_CDS: -0.50 Total: 45.15 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.30 -7.25 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332514317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.330 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds