Wall clock time and date at job start Mon Mar 30 2020 01:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 C 1.52994 * 109.47421 * 180.02562 * 7 6 5 9 9 S 1.81402 * 109.47264 * 179.97438 * 8 7 6 10 10 O 1.42096 * 108.57967 * 294.48623 * 9 8 7 11 11 O 1.42109 * 108.57472 * 65.50789 * 9 8 7 12 12 C 1.81394 * 101.92441 * 179.97438 * 9 8 7 13 13 C 1.50694 * 109.47331 * 179.97438 * 12 9 8 14 14 H 1.08001 * 120.00449 * 0.02562 * 13 12 9 15 15 C 1.37884 * 120.00037 * 180.02562 * 13 12 9 16 16 N 1.31508 * 120.00057 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99756 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47368 * 90.00010 * 17 15 13 19 19 H 1.48503 * 109.46689 * 209.99871 * 17 15 13 20 20 H 1.48500 * 109.47164 * 329.99342 * 17 15 13 21 21 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 22 22 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 23 23 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 24 24 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 25 25 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 26 26 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 27 27 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 28 28 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 29 29 H 1.09000 * 109.46883 * 299.99558 * 8 7 6 30 30 H 1.08997 * 109.47478 * 59.99387 * 8 7 6 31 31 H 1.09007 * 109.47550 * 300.00532 * 12 9 8 32 32 H 1.09006 * 109.47058 * 60.00177 * 12 9 8 33 33 H 0.97002 * 120.00378 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 6 6.5114 -2.5425 -1.4427 9 16 7.0190 -2.8713 -3.1529 10 8 6.0392 -3.6987 -3.7648 11 8 7.3671 -1.6378 -3.7669 12 6 8.5311 -3.8446 -2.9145 13 6 9.1057 -4.2169 -4.2569 14 1 8.6111 -3.8994 -5.1630 15 6 10.2631 -4.9629 -4.3285 16 7 10.8652 -5.3500 -3.2253 17 14 10.9757 -5.4238 -5.9926 18 1 11.9230 -4.3692 -6.4347 19 1 11.6934 -6.7191 -5.8820 20 1 9.8772 -5.5496 -6.9839 21 7 2.3030 -1.0840 -0.0002 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8897 0.5142 25 1 5.5843 -0.8849 0.5130 26 1 4.6208 -2.3815 0.5141 27 1 4.4380 -2.2655 -1.9560 28 1 5.4015 -0.7690 -1.9571 29 1 7.2990 -1.9909 -0.9292 30 1 6.3349 -3.4871 -0.9284 31 1 9.2593 -3.2543 -2.3582 32 1 8.2956 -4.7509 -2.3565 33 1 11.6792 -5.8752 -3.2756 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332514317.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:43 Heat of formation + Delta-G solvation = -50.259876 kcal Electronic energy + Delta-G solvation = -18381.372301 eV Core-core repulsion = 15150.382430 eV Total energy + Delta-G solvation = -3230.989871 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.65639 -37.70745 -37.35140 -36.84048 -36.55050 -35.34666 -33.63828 -30.99379 -30.24483 -29.11115 -25.67169 -24.76259 -23.54589 -22.12278 -19.64097 -19.20690 -18.87348 -18.47397 -17.49005 -17.12892 -16.98451 -16.11901 -15.98979 -15.70924 -14.91661 -14.51585 -14.46461 -14.23939 -13.94903 -13.84977 -13.55499 -13.34749 -13.06599 -13.01132 -12.88152 -12.79861 -12.70024 -12.50138 -12.39716 -12.14320 -11.90026 -11.79657 -11.55523 -11.00119 -10.74133 -10.71097 -8.38314 -6.52837 -0.63515 0.07108 1.14175 1.38903 1.39147 1.51211 1.78296 2.25973 2.33217 2.64776 2.96206 2.99290 3.06003 3.38768 3.61446 3.85247 3.91516 4.07000 4.35997 4.45433 4.54134 4.55444 4.63555 4.80011 4.83140 4.86085 4.88727 4.95431 5.03058 5.09391 5.40819 5.80880 6.57654 7.09671 7.17201 8.73974 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.054070 B = 0.003245 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.723883 B = 8625.661119 C = 8731.093640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.160 3.840 3 N -0.413 5.413 4 O 0.067 5.933 5 C 0.191 3.809 6 C -0.016 4.016 7 C -0.116 4.116 8 C -0.588 4.588 9 S 2.403 3.597 10 O -0.997 6.997 11 O -0.995 6.995 12 C -0.427 4.427 13 C -0.563 4.563 14 H 0.057 0.943 15 C 0.025 3.975 16 N -0.908 5.908 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.268 1.268 21 N -0.505 5.505 22 H 0.099 0.901 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.143 0.857 26 H 0.139 0.861 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.173 0.827 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.700 7.586 11.487 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 N -0.124 5.124 4 O 0.012 5.988 5 C -0.029 4.029 6 C -0.055 4.055 7 C -0.156 4.156 8 C -0.720 4.720 9 S 2.594 3.406 10 O -0.994 6.994 11 O -0.992 6.992 12 C -0.559 4.559 13 C -0.601 4.601 14 H 0.075 0.925 15 C -0.177 4.177 16 N -0.545 5.545 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.193 1.193 20 H -0.192 1.192 21 N -0.240 5.240 22 H 0.118 0.882 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.161 0.839 26 H 0.156 0.844 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.190 0.810 30 H 0.186 0.814 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.610 8.270 10.746 19.933 hybrid contribution 1.042 -0.572 -0.271 1.220 sum -13.567 7.698 10.475 18.790 Atomic orbital electron populations 1.20353 0.80448 1.05876 1.05436 1.26685 1.02249 0.83087 0.99249 1.74627 0.89823 1.24828 1.23158 1.85264 1.22227 1.25362 1.65940 1.29415 0.97714 0.81985 0.93830 1.20494 0.87611 0.99769 0.97661 1.21347 0.95379 1.00895 0.97988 1.30106 1.07610 1.12157 1.22135 1.08093 0.77585 0.75174 0.79750 1.93431 1.60222 1.69806 1.75934 1.93433 1.84740 1.45235 1.75822 1.27615 1.14074 1.09778 1.04418 1.20788 1.11388 1.36979 0.90944 0.92532 1.25731 0.96434 0.94579 1.01001 1.69988 1.19147 1.36454 1.28909 0.85566 0.78842 0.78526 0.79104 1.19062 1.19293 1.19239 1.71955 1.00490 1.29995 1.21550 0.88206 0.87763 0.88195 0.83920 0.84352 0.90525 0.89865 0.80954 0.81362 0.89310 0.89420 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.51 71.24 0.75 -0.09 16 2 C 0.16 3.57 8.22 138.46 1.14 4.71 16 3 N -0.41 -10.35 12.16 -60.32 -0.73 -11.08 16 4 O 0.07 1.58 11.31 74.85 0.85 2.43 16 5 C 0.19 3.96 7.77 88.38 0.69 4.65 16 6 C -0.02 -0.22 5.84 29.85 0.17 -0.04 16 7 C -0.12 -2.35 5.20 30.59 0.16 -2.19 16 8 C -0.59 -12.18 5.81 71.98 0.42 -11.77 16 9 S 2.40 90.56 4.64 -56.49 -0.26 90.30 16 10 O -1.00 -44.66 18.10 -127.37 -2.31 -46.96 16 11 O -0.99 -44.13 18.10 -127.37 -2.31 -46.43 16 12 C -0.43 -19.29 5.56 71.23 0.40 -18.89 16 13 C -0.56 -31.14 9.13 25.60 0.23 -30.91 16 14 H 0.06 3.18 7.71 -2.91 -0.02 3.16 16 15 C 0.03 1.38 5.46 84.66 0.46 1.85 16 16 N -0.91 -50.40 13.29 21.45 0.28 -50.11 16 17 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 N -0.51 -11.99 11.55 -303.19 -3.50 -15.49 16 22 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.14 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.17 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.17 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.09 3.86 8.14 -2.39 -0.02 3.84 16 32 H 0.09 3.83 8.14 -2.39 -0.02 3.81 16 33 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -79.32 309.07 -0.42 -79.74 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.11 Total: 5.48 kcal Atomic # 6 Polarization: -57.10 SS G_CDS: 4.42 Total: -52.69 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -3.95 Total: -76.68 kcal Atomic # 8 Polarization: -87.20 SS G_CDS: -3.76 Total: -90.97 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 90.56 SS G_CDS: -0.26 Total: 90.30 kcal Total: -79.32 -0.42 -79.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332514317.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.484 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds