Wall clock time and date at job start Mon Mar 30 2020 01:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47437 * 2 1 4 4 N 1.29954 * 126.28837 * 89.97079 * 3 2 1 5 5 O 1.21300 * 110.24760 * 180.02562 * 4 3 2 6 6 C 1.33640 * 109.81392 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.54730 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46923 * 195.02380 * 7 6 5 9 9 C 1.53005 * 109.47032 * 75.02912 * 7 6 5 10 10 S 1.81399 * 109.47410 * 315.02395 * 7 6 5 11 11 O 1.42098 * 108.57930 * 294.48552 * 10 7 6 12 12 O 1.42100 * 108.57478 * 65.51668 * 10 7 6 13 13 C 1.81404 * 101.91985 * 179.97438 * 10 7 6 14 14 C 1.50703 * 109.46895 * 179.97438 * 13 10 7 15 15 H 1.08004 * 120.00022 * 0.02562 * 14 13 10 16 16 C 1.37871 * 119.99968 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00337 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47011 * 90.00128 * 18 16 14 20 20 H 1.48506 * 109.47374 * 210.00002 * 18 16 14 21 21 H 1.48500 * 109.47510 * 330.00351 * 18 16 14 22 22 N 1.31127 * 106.89892 * 0.22265 * 6 5 4 23 23 H 1.09001 * 109.46985 * 300.00361 * 1 2 3 24 24 H 1.09006 * 109.46931 * 60.00218 * 1 2 3 25 25 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46985 * 239.99639 * 2 1 3 27 27 H 1.09006 * 109.46931 * 119.99782 * 2 1 3 28 28 H 1.08992 * 109.47199 * 59.99135 * 9 7 6 29 29 H 1.09001 * 109.46962 * 179.97438 * 9 7 6 30 30 H 1.09004 * 109.46832 * 299.99524 * 9 7 6 31 31 H 1.08997 * 109.47476 * 300.00325 * 13 10 7 32 32 H 1.08995 * 109.46830 * 60.00457 * 13 10 7 33 33 H 0.96993 * 120.00760 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2883 2.1461 1.0475 5 8 2.6766 3.2452 0.7123 6 6 2.7057 3.3282 -0.6212 7 6 3.1272 4.5232 -1.4370 8 1 2.7987 4.3933 -2.4682 9 6 4.6512 4.6541 -1.3999 10 16 2.3745 6.0225 -0.7469 11 8 0.9652 5.9366 -0.9074 12 8 2.9131 6.2440 0.5492 13 6 3.0066 7.3063 -1.8618 14 6 2.4741 8.6497 -1.4341 15 1 1.8210 8.7237 -0.5771 16 6 2.8214 9.7842 -2.1363 17 7 3.6170 9.6941 -3.1796 18 14 2.1618 11.4494 -1.6058 19 1 3.0990 12.0657 -0.6324 20 1 2.0310 12.3313 -2.7935 21 1 0.8314 11.2752 -0.9697 22 7 2.2923 2.1731 -1.0841 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 5.1034 3.7532 -1.8145 29 1 4.9561 5.5181 -1.9904 30 1 4.9797 4.7840 -0.3687 31 1 4.0958 7.3176 -1.8225 32 1 2.6820 7.0948 -2.8806 33 1 3.8611 10.4922 -3.6739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333218412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:04 Heat of formation + Delta-G solvation = -12.778418 kcal Electronic energy + Delta-G solvation = -19334.356123 eV Core-core repulsion = 16104.991570 eV Total energy + Delta-G solvation = -3229.364553 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.65410 -36.46700 -36.30429 -35.37476 -35.16626 -33.47771 -32.82006 -30.84893 -29.11926 -25.23247 -25.18315 -23.72701 -23.03070 -21.23501 -18.33582 -18.11246 -17.60530 -16.89655 -16.22475 -15.79721 -15.41951 -14.91771 -14.83099 -14.31941 -14.26592 -13.35246 -13.11080 -12.83252 -12.63531 -12.56031 -12.22360 -11.98498 -11.76425 -11.52663 -11.49179 -11.40197 -11.34747 -11.28192 -11.05783 -10.94538 -10.68856 -10.48530 -9.95564 -9.81711 -9.25460 -8.77730 -6.41219 -4.51525 0.49216 1.11488 2.14296 2.51318 3.19164 3.24804 3.31067 3.38514 3.52811 3.86364 4.17095 4.33295 4.39782 4.66322 4.88711 4.91808 4.96664 4.98664 5.11528 5.20949 5.51189 5.53279 5.61853 5.67833 5.70484 5.87838 5.94403 6.00084 6.49547 6.54410 7.38582 7.64653 8.05996 8.49754 9.16459 10.70333 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.041895 B = 0.004562 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.175357 B = 6136.269967 C = 6313.508768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.030 4.030 3 C 0.167 3.833 4 N -0.378 5.378 5 O 0.087 5.913 6 C 0.203 3.797 7 C -0.510 4.510 8 H 0.171 0.829 9 C -0.141 4.141 10 S 2.383 3.617 11 O -0.941 6.941 12 O -0.930 6.930 13 C -0.388 4.388 14 C -0.533 4.533 15 H 0.074 0.926 16 C 0.078 3.922 17 N -0.880 5.880 18 Si 0.907 3.093 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.266 1.266 22 N -0.467 5.467 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 -14.265 1.401 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.069 4.069 3 C -0.106 4.106 4 N -0.085 5.085 5 O 0.028 5.972 6 C -0.018 4.018 7 C -0.612 4.612 8 H 0.188 0.812 9 C -0.199 4.199 10 S 2.564 3.436 11 O -0.939 6.939 12 O -0.927 6.927 13 C -0.524 4.524 14 C -0.572 4.572 15 H 0.092 0.908 16 C -0.129 4.129 17 N -0.516 5.516 18 Si 0.733 3.267 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.190 1.190 22 N -0.202 5.202 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.198 -14.841 2.518 15.055 hybrid contribution 0.300 0.723 -0.670 1.030 sum 0.102 -14.118 1.848 14.238 Atomic orbital electron populations 1.21764 0.93161 1.02775 1.03101 1.19940 0.96960 0.85350 1.04655 1.25977 1.00477 1.00588 0.83525 1.74628 1.17519 0.92621 1.23778 1.85416 1.60569 1.27290 1.23886 1.27431 0.96009 0.96132 0.82190 1.29492 1.10146 1.11792 1.09746 0.81172 1.21748 0.87515 1.05336 1.05350 1.09878 0.76692 0.77627 0.79418 1.93511 1.27736 1.85171 1.87434 1.93518 1.80404 1.82716 1.36038 1.27485 1.07971 1.08082 1.08865 1.20343 1.32327 0.88768 1.15750 0.90796 1.24907 0.94133 0.99639 0.94194 1.69927 1.33483 1.30340 1.17805 0.86328 0.79983 0.81906 0.78524 1.19795 1.20581 1.19007 1.71874 1.17536 1.01513 1.29238 0.92132 0.91740 0.90989 0.88522 0.88994 0.90437 0.88140 0.89791 0.88814 0.89123 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.03 -0.31 6.56 -27.89 -0.18 -0.49 16 3 C 0.17 2.54 7.47 -156.37 -1.17 1.38 16 4 N -0.38 -6.50 12.16 30.90 0.38 -6.13 16 5 O 0.09 1.60 11.08 18.11 0.20 1.80 16 6 C 0.20 3.48 7.08 -13.06 -0.09 3.39 16 7 C -0.51 -7.81 3.25 -27.88 -0.09 -7.90 16 8 H 0.17 2.14 8.14 -51.92 -0.42 1.72 16 9 C -0.14 -1.78 8.92 37.16 0.33 -1.45 16 10 S 2.38 47.86 4.07 -107.50 -0.44 47.42 16 11 O -0.94 -21.79 18.10 -57.83 -1.05 -22.84 16 12 O -0.93 -20.68 17.78 -57.84 -1.03 -21.71 16 13 C -0.39 -8.47 5.11 36.01 0.18 -8.29 16 14 C -0.53 -13.97 9.13 -34.44 -0.31 -14.28 16 15 H 0.07 1.94 7.71 -52.48 -0.40 1.54 16 16 C 0.08 2.04 5.46 -17.82 -0.10 1.94 16 17 N -0.88 -23.43 13.29 55.43 0.74 -22.69 16 18 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 22 N -0.47 -7.71 11.55 -9.87 -0.11 -7.83 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.10 1.13 6.56 -51.93 -0.34 0.79 16 30 H 0.08 1.06 8.06 -51.93 -0.42 0.65 16 31 H 0.09 1.91 6.87 -51.93 -0.36 1.55 16 32 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 304.40 15.07 4.59 4.59 Total: -1.00 -33.00 304.40 -6.85 -39.85 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.04 Total: -0.94 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: -1.06 Total: -26.74 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 1.00 Total: -36.65 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.87 Total: -42.75 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 47.86 SS G_CDS: -0.44 Total: 47.42 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.00 -6.85 -39.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333218412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.071 kcal (2) G-P(sol) polarization free energy of solvation -33.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds