Wall clock time and date at job start Mon Mar 30 2020 01:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.47437 * 2 1 4 4 N 1.29954 * 126.28837 * 89.97079 * 3 2 1 5 5 O 1.21300 * 110.24760 * 180.02562 * 4 3 2 6 6 C 1.33640 * 109.81392 * 0.02562 * 5 4 3 7 7 C 1.50702 * 126.54730 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46923 * 195.02380 * 7 6 5 9 9 C 1.53005 * 109.47032 * 75.02912 * 7 6 5 10 10 S 1.81399 * 109.47410 * 315.02395 * 7 6 5 11 11 O 1.42098 * 108.57930 * 294.48552 * 10 7 6 12 12 O 1.42100 * 108.57478 * 65.51668 * 10 7 6 13 13 C 1.81404 * 101.91985 * 179.97438 * 10 7 6 14 14 C 1.50703 * 109.46895 * 179.97438 * 13 10 7 15 15 H 1.08004 * 120.00022 * 0.02562 * 14 13 10 16 16 C 1.37871 * 119.99968 * 179.97438 * 14 13 10 17 17 N 1.31520 * 120.00337 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00098 * 180.02562 * 16 14 13 19 19 H 1.48510 * 109.47011 * 90.00128 * 18 16 14 20 20 H 1.48506 * 109.47374 * 210.00002 * 18 16 14 21 21 H 1.48500 * 109.47510 * 330.00351 * 18 16 14 22 22 N 1.31127 * 106.89892 * 0.22265 * 6 5 4 23 23 H 1.09001 * 109.46985 * 300.00361 * 1 2 3 24 24 H 1.09006 * 109.46931 * 60.00218 * 1 2 3 25 25 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46985 * 239.99639 * 2 1 3 27 27 H 1.09006 * 109.46931 * 119.99782 * 2 1 3 28 28 H 1.08992 * 109.47199 * 59.99135 * 9 7 6 29 29 H 1.09001 * 109.46962 * 179.97438 * 9 7 6 30 30 H 1.09004 * 109.46832 * 299.99524 * 9 7 6 31 31 H 1.08997 * 109.47476 * 300.00325 * 13 10 7 32 32 H 1.08995 * 109.46830 * 60.00457 * 13 10 7 33 33 H 0.96993 * 120.00760 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2883 2.1461 1.0475 5 8 2.6766 3.2452 0.7123 6 6 2.7057 3.3282 -0.6212 7 6 3.1272 4.5232 -1.4370 8 1 2.7987 4.3933 -2.4682 9 6 4.6512 4.6541 -1.3999 10 16 2.3745 6.0225 -0.7469 11 8 0.9652 5.9366 -0.9074 12 8 2.9131 6.2440 0.5492 13 6 3.0066 7.3063 -1.8618 14 6 2.4741 8.6497 -1.4341 15 1 1.8210 8.7237 -0.5771 16 6 2.8214 9.7842 -2.1363 17 7 3.6170 9.6941 -3.1796 18 14 2.1618 11.4494 -1.6058 19 1 3.0990 12.0657 -0.6324 20 1 2.0310 12.3313 -2.7935 21 1 0.8314 11.2752 -0.9697 22 7 2.2923 2.1731 -1.0841 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 5.1034 3.7532 -1.8145 29 1 4.9561 5.5181 -1.9904 30 1 4.9797 4.7840 -0.3687 31 1 4.0958 7.3176 -1.8225 32 1 2.6820 7.0948 -2.8806 33 1 3.8611 10.4922 -3.6739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333218412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:04 Heat of formation + Delta-G solvation = -38.501919 kcal Electronic energy + Delta-G solvation = -19335.471578 eV Core-core repulsion = 16104.991570 eV Total energy + Delta-G solvation = -3230.480007 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.91818 -38.01974 -37.64478 -37.03769 -36.42965 -35.39539 -33.82306 -32.05841 -30.92942 -26.39198 -26.23058 -25.57907 -24.21539 -22.42425 -19.85305 -19.43179 -19.18347 -18.50294 -17.73570 -17.29517 -17.04482 -16.48946 -15.98335 -15.83515 -15.14187 -14.51327 -14.42619 -14.17685 -14.11079 -13.84065 -13.72628 -13.40207 -13.10931 -13.05018 -12.90919 -12.72960 -12.67730 -12.57527 -12.50404 -12.46616 -12.07955 -11.84859 -11.74709 -11.26037 -10.90455 -10.72697 -8.38303 -6.53654 -1.10821 -0.19548 0.93693 1.21781 1.42381 1.43153 1.54560 1.90366 2.21565 2.35589 2.74192 2.88092 2.94072 3.07179 3.41531 3.60535 3.94191 4.13945 4.16754 4.20379 4.51727 4.58110 4.62337 4.74442 4.75832 4.78311 4.87048 4.95173 5.08592 5.20762 5.39916 5.76446 6.53579 6.78195 7.16815 8.73512 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.041895 B = 0.004562 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.175357 B = 6136.269967 C = 6313.508768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 C 0.173 3.827 4 N -0.398 5.398 5 O 0.060 5.940 6 C 0.191 3.809 7 C -0.482 4.482 8 H 0.204 0.796 9 C -0.147 4.147 10 S 2.396 3.604 11 O -0.982 6.982 12 O -0.961 6.961 13 C -0.400 4.400 14 C -0.566 4.566 15 H 0.059 0.941 16 C 0.034 3.966 17 N -0.902 5.902 18 Si 0.956 3.044 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.269 1.269 22 N -0.471 5.471 23 H 0.046 0.954 24 H 0.051 0.949 25 H 0.104 0.896 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.080 0.920 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -15.815 0.627 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 C -0.100 4.100 4 N -0.110 5.110 5 O 0.006 5.994 6 C -0.030 4.030 7 C -0.590 4.590 8 H 0.221 0.779 9 C -0.205 4.205 10 S 2.582 3.418 11 O -0.979 6.979 12 O -0.958 6.958 13 C -0.535 4.535 14 C -0.604 4.604 15 H 0.077 0.923 16 C -0.170 4.170 17 N -0.538 5.538 18 Si 0.779 3.221 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.193 1.193 22 N -0.206 5.206 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.134 0.866 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.268 -16.300 1.760 16.397 hybrid contribution 0.165 1.034 -0.450 1.140 sum 0.432 -15.266 1.311 15.328 Atomic orbital electron populations 1.21775 0.92443 1.04540 1.01797 1.20303 0.97403 0.82635 1.06745 1.26925 0.98522 1.01960 0.82572 1.74636 1.18920 0.92679 1.24746 1.85396 1.61425 1.28100 1.24473 1.27741 0.96258 0.96878 0.82146 1.29193 1.11661 1.07629 1.10490 0.77934 1.21951 0.85150 1.07498 1.05894 1.08971 0.75751 0.78506 0.78527 1.93458 1.30310 1.86371 1.87723 1.93476 1.80571 1.84141 1.37572 1.27489 1.08748 1.07513 1.09710 1.20705 1.32657 0.91336 1.15726 0.92266 1.25633 0.94386 1.02669 0.94307 1.69964 1.34117 1.31369 1.18372 0.85578 0.79319 0.78529 0.78703 1.18962 1.19277 1.19344 1.71902 1.17481 1.01458 1.29716 0.93490 0.92975 0.87711 0.86303 0.86998 0.87546 0.86592 0.90107 0.87394 0.88281 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.89 71.98 0.71 -1.70 16 2 C -0.03 -0.57 6.56 29.85 0.20 -0.38 16 3 C 0.17 4.98 7.47 138.46 1.03 6.01 16 4 N -0.40 -13.44 12.16 -60.31 -0.73 -14.17 16 5 O 0.06 2.17 11.08 74.86 0.83 3.00 16 6 C 0.19 6.31 7.08 88.38 0.63 6.93 16 7 C -0.48 -13.95 3.25 29.85 0.10 -13.86 16 8 H 0.20 4.53 8.14 -2.39 -0.02 4.51 16 9 C -0.15 -3.34 8.92 71.98 0.64 -2.70 16 10 S 2.40 96.86 4.07 -56.49 -0.23 96.63 16 11 O -0.98 -46.40 18.10 -127.37 -2.31 -48.70 16 12 O -0.96 -43.67 17.78 -127.37 -2.26 -45.93 16 13 C -0.40 -17.46 5.11 71.24 0.36 -17.10 16 14 C -0.57 -30.12 9.13 25.60 0.23 -29.88 16 15 H 0.06 3.22 7.71 -2.91 -0.02 3.20 16 16 C 0.03 1.79 5.46 84.65 0.46 2.25 16 17 N -0.90 -47.72 13.29 21.45 0.28 -47.44 16 18 Si 0.96 41.32 29.54 68.60 2.03 43.35 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 N -0.47 -14.65 11.55 -303.19 -3.50 -18.16 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 28 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.12 2.31 6.56 -2.39 -0.02 2.30 16 30 H 0.08 1.93 8.06 -2.38 -0.02 1.91 16 31 H 0.11 4.34 6.87 -2.39 -0.02 4.33 16 32 H 0.10 4.11 8.14 -2.39 -0.02 4.09 16 33 H 0.28 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -71.94 304.40 -0.41 -72.35 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.12 Total: 9.50 kcal Atomic # 6 Polarization: -54.79 SS G_CDS: 4.37 Total: -50.42 kcal Atomic # 7 Polarization: -75.82 SS G_CDS: -3.95 Total: -79.77 kcal Atomic # 8 Polarization: -87.89 SS G_CDS: -3.74 Total: -91.63 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Atomic # 16 Polarization: 96.86 SS G_CDS: -0.23 Total: 96.63 kcal Total: -71.94 -0.41 -72.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333218412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.844 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds