Wall clock time and date at job start Mon Mar 30 2020 01:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00047 * 2 1 4 4 C 1.52998 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47064 * 55.00083 * 4 3 2 6 6 O 1.42907 * 109.47284 * 295.00549 * 4 3 2 7 7 C 1.42893 * 113.99987 * 149.99766 * 6 4 3 8 8 C 1.50700 * 109.47032 * 175.00358 * 4 3 2 9 9 N 1.29941 * 126.28818 * 74.97867 * 8 4 3 10 10 O 1.21305 * 110.25255 * 179.97438 * 9 8 4 11 11 C 1.33643 * 109.80546 * 0.02562 * 10 9 8 12 12 C 1.50703 * 126.54407 * 179.97438 * 11 10 9 13 13 S 1.81002 * 109.47349 * 270.02153 * 12 11 10 14 14 C 1.76199 * 100.00182 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99976 * 0.02562 * 14 13 12 16 16 C 1.38803 * 119.99949 * 179.97438 * 14 13 12 17 17 N 1.31630 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46819 * 59.99977 * 18 16 14 20 20 H 1.48494 * 109.47285 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47086 * 300.00273 * 18 16 14 22 22 N 1.31124 * 106.90512 * 0.22514 * 11 10 9 23 23 H 1.09007 * 109.46911 * 299.99546 * 1 2 3 24 24 H 1.08999 * 109.47153 * 59.99260 * 1 2 3 25 25 H 1.08994 * 109.47327 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46607 * 60.00579 * 3 2 1 27 27 H 1.08997 * 109.47341 * 300.00131 * 3 2 1 28 28 H 1.08995 * 109.47157 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47689 * 300.00227 * 7 6 4 30 30 H 1.09004 * 109.47199 * 60.00548 * 7 6 4 31 31 H 1.09005 * 109.46867 * 150.02455 * 12 11 10 32 32 H 1.09000 * 109.47235 * 30.02495 * 12 11 10 33 33 H 0.97005 * 119.99878 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8427 6 8 3.9659 0.5790 1.2201 7 6 5.1690 -0.1823 1.0986 8 6 4.1479 2.5559 -0.1244 9 7 4.2199 3.4535 0.8125 10 8 4.7711 4.4509 0.3970 11 6 5.1131 4.2792 -0.8835 12 6 5.8155 5.2783 -1.7665 13 16 4.5876 6.3089 -2.6070 14 6 5.6541 7.3534 -3.5431 15 1 6.7250 7.2303 -3.4769 16 6 5.1177 8.3338 -4.3665 17 7 3.8125 8.4834 -4.4475 18 14 6.2483 9.4416 -5.3584 19 1 7.0723 8.6140 -6.2757 20 1 5.4340 10.3972 -6.1514 21 1 7.1374 10.1938 -4.4370 22 7 4.7159 3.0775 -1.2264 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 5.4287 -0.6084 2.0676 29 1 5.0198 -0.9850 0.3765 30 1 5.9767 0.4663 0.7592 31 1 6.4149 4.7498 -2.5078 32 1 6.4636 5.9088 -1.1577 33 1 3.4377 9.1688 -5.0226 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333736151.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:35 Heat of formation + Delta-G solvation = -44.729651 kcal Electronic energy + Delta-G solvation = -18480.327246 eV Core-core repulsion = 15249.577184 eV Total energy + Delta-G solvation = -3230.750062 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.77525 -39.98038 -38.32775 -36.96162 -34.76394 -34.57106 -31.78525 -30.01156 -27.79992 -27.68097 -27.24522 -25.48206 -24.46265 -22.26664 -19.91394 -19.39044 -18.80813 -18.04558 -17.56116 -16.98159 -16.88458 -16.45687 -16.37954 -16.27450 -15.74409 -15.12665 -14.83240 -14.59533 -14.08838 -13.50926 -13.44755 -13.30175 -13.17365 -12.90581 -12.85599 -12.53959 -12.44070 -12.30639 -12.12823 -11.93461 -11.16118 -11.13099 -11.10807 -10.79827 -10.41924 -8.75790 -8.38184 -6.17847 -0.18321 0.79264 1.37750 1.47273 1.51859 1.58015 1.75514 1.99226 2.23681 2.47172 2.85831 2.98950 3.02829 3.26107 3.66280 3.80405 3.91784 4.14507 4.25985 4.28710 4.36632 4.42635 4.47369 4.52236 4.54512 4.60475 4.73326 4.74511 4.83054 5.43255 5.84544 5.99920 6.18927 6.95758 7.04962 8.70947 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.030033 B = 0.003688 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.082458 B = 7590.210440 C = 8179.337430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.397 6.397 3 C 0.076 3.924 4 C 0.190 3.810 5 H 0.114 0.886 6 O -0.377 6.377 7 C 0.023 3.977 8 C 0.140 3.860 9 N -0.375 5.375 10 O 0.078 5.922 11 C 0.224 3.776 12 C -0.020 4.020 13 S -0.147 6.147 14 C -0.539 4.539 15 H 0.092 0.908 16 C 0.020 3.980 17 N -0.909 5.909 18 Si 0.997 3.003 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.261 1.261 22 N -0.483 5.483 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.108 0.892 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.033 0.967 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.233 -14.676 7.897 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.316 6.316 3 C -0.002 4.002 4 C 0.130 3.870 5 H 0.132 0.868 6 O -0.293 6.293 7 C -0.073 4.073 8 C -0.134 4.134 9 N -0.084 5.084 10 O 0.019 5.981 11 C 0.004 3.996 12 C -0.169 4.169 13 S 0.079 5.921 14 C -0.687 4.687 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.545 5.545 18 Si 0.819 3.181 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.186 1.186 22 N -0.219 5.219 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.409 -15.265 8.622 17.588 hybrid contribution 1.671 1.242 -0.922 2.277 sum 0.262 -14.023 7.700 16.000 Atomic orbital electron populations 1.23013 0.78695 1.04486 1.00958 1.87815 1.21973 1.26164 1.95611 1.22370 0.89865 0.86112 1.01847 1.20103 0.93010 0.83604 0.90317 0.86808 1.88009 1.43556 1.67221 1.30554 1.23091 0.84923 0.94611 1.04644 1.26559 1.01049 1.00488 0.85276 1.74613 1.14928 0.95313 1.23525 1.85329 1.53814 1.32690 1.26222 1.28138 0.94885 0.92947 0.83675 1.21822 1.00192 0.96316 0.98521 1.85237 1.11765 1.39543 1.55534 1.23076 0.94861 1.20234 1.30496 0.89026 1.26059 0.97138 0.98216 0.97179 1.70133 1.12507 1.33659 1.38229 0.85011 0.77698 0.77431 0.77972 1.18711 1.20624 1.18580 1.71922 1.16272 1.07331 1.26369 0.93271 0.93126 0.87322 0.92199 0.90968 0.87185 0.91584 0.94838 0.85660 0.85535 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -9.49 10.67 -144.34 -1.54 -11.03 16 3 C 0.08 1.95 5.58 71.98 0.40 2.35 16 4 C 0.19 5.22 2.94 29.85 0.09 5.31 16 5 H 0.11 2.82 7.79 -2.39 -0.02 2.80 16 6 O -0.38 -10.17 10.30 -144.34 -1.49 -11.66 16 7 C 0.02 0.45 10.81 113.37 1.23 1.68 16 8 C 0.14 4.64 7.06 138.46 0.98 5.62 16 9 N -0.37 -13.29 12.16 -60.32 -0.73 -14.03 16 10 O 0.08 2.82 11.31 74.83 0.85 3.66 16 11 C 0.22 8.05 7.77 88.38 0.69 8.74 16 12 C -0.02 -0.71 6.30 71.24 0.45 -0.26 16 13 S -0.15 -7.26 21.42 -56.49 -1.21 -8.47 16 14 C -0.54 -28.28 9.50 67.96 0.65 -27.63 16 15 H 0.09 4.42 7.80 -2.91 -0.02 4.40 16 16 C 0.02 1.04 5.49 84.86 0.47 1.50 16 17 N -0.91 -52.24 13.22 21.65 0.29 -51.96 16 18 Si 1.00 40.99 29.55 68.60 2.03 43.01 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 N -0.48 -17.27 11.55 -303.20 -3.50 -20.77 16 23 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 30 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.13 4.25 8.14 -2.39 -0.02 4.23 16 32 H 0.13 4.04 8.14 -2.40 -0.02 4.02 16 33 H 0.27 14.66 8.31 -92.70 -0.77 13.89 16 Total: -1.00 -65.09 313.22 1.99 -63.10 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.11 Total: 9.18 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 6.19 Total: -1.04 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -3.95 Total: -86.76 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -2.18 Total: -19.03 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: -7.26 SS G_CDS: -1.21 Total: -8.47 kcal Total: -65.09 1.99 -63.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333736151.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.369 kcal (2) G-P(sol) polarization free energy of solvation -65.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds