Wall clock time and date at job start Mon Mar 30 2020 01:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 110.54147 * 2 1 4 4 O 1.42099 * 110.54189 * 223.25454 * 2 1 3 5 5 C 1.76196 * 104.45273 * 111.62466 * 2 1 3 6 6 C 1.39870 * 126.04152 * 269.97813 * 5 2 1 7 7 N 1.30839 * 108.19862 * 180.02562 * 6 5 2 8 8 N 1.40079 * 108.20849 * 359.97438 * 7 6 5 9 9 C 1.46502 * 126.03442 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47267 * 304.99629 * 9 8 7 11 11 O 1.42897 * 109.47331 * 179.97438 * 10 9 8 12 12 C 1.42899 * 114.00350 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47255 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99979 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47101 * 90.00138 * 17 15 13 19 19 H 1.48491 * 109.47380 * 210.00320 * 17 15 13 20 20 H 1.48504 * 109.46857 * 330.00458 * 17 15 13 21 21 C 1.34948 * 107.92564 * 0.02562 * 8 7 6 22 22 H 1.09003 * 109.47225 * 308.37198 * 1 2 3 23 23 H 1.09003 * 109.47483 * 68.37595 * 1 2 3 24 24 H 1.09004 * 109.47153 * 188.37653 * 1 2 3 25 25 H 1.07997 * 125.89658 * 359.97438 * 6 5 2 26 26 H 1.08994 * 109.47186 * 64.99894 * 9 8 7 27 27 H 1.09001 * 109.46653 * 185.00231 * 9 8 7 28 28 H 1.08994 * 109.47234 * 300.00235 * 10 9 8 29 29 H 1.09007 * 109.46596 * 60.00293 * 10 9 8 30 30 H 1.08994 * 109.47072 * 300.00959 * 12 11 10 31 31 H 1.09000 * 109.46407 * 60.00425 * 12 11 10 32 32 H 0.97001 * 119.99936 * 179.97438 * 16 15 13 33 33 H 1.08007 * 126.12251 * 180.26869 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4595 0.1290 2.7436 7 7 2.7707 -0.6881 3.7170 8 7 2.7722 -1.9936 3.2090 9 6 3.0699 -3.2124 3.9654 10 6 4.4388 -3.0755 4.6351 11 8 4.7289 -4.2640 5.3734 12 6 5.9917 -4.2395 6.0418 13 6 6.1926 -5.5356 6.7839 14 1 5.4321 -6.3017 6.7483 15 6 7.3476 -5.7439 7.5074 16 7 8.2738 -4.8113 7.5503 17 14 7.5970 -7.3508 8.4267 18 1 8.2727 -8.3299 7.5379 19 1 8.4376 -7.1093 9.6267 20 1 6.2787 -7.8907 8.8463 21 6 2.4522 -1.9301 1.8995 22 1 -0.3634 0.6379 0.8057 23 1 -0.3634 0.3787 -0.9553 24 1 -0.3634 -1.0167 0.1497 25 1 2.3767 1.2030 2.8204 26 1 2.3057 -3.3625 4.7279 27 1 3.0805 -4.0666 3.2884 28 1 5.2030 -2.9254 3.8725 29 1 4.4282 -2.2212 5.3121 30 1 6.7884 -4.1136 5.3087 31 1 6.0130 -3.4092 6.7476 32 1 9.0863 -4.9576 8.0596 33 1 2.3651 -2.7683 1.2240 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335240250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:10 Heat of formation + Delta-G solvation = -39.902613 kcal Electronic energy + Delta-G solvation = -18201.301009 eV Core-core repulsion = 14970.760263 eV Total energy + Delta-G solvation = -3230.540746 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.49336 -37.20604 -37.11207 -36.06939 -33.96076 -32.71323 -30.79859 -29.80985 -29.02458 -26.95927 -23.50211 -22.42884 -22.11374 -21.00285 -19.01177 -18.00478 -16.60592 -16.43479 -16.26777 -15.87411 -15.80512 -15.19237 -14.90675 -14.49476 -14.16552 -13.62737 -13.56747 -13.41533 -13.26675 -12.94219 -12.28256 -12.19079 -12.14713 -11.89635 -11.30013 -11.26353 -11.00437 -10.92810 -10.86006 -10.66275 -10.20752 -9.78968 -9.39037 -9.24514 -9.01025 -8.34423 -6.19925 -4.23211 -0.06630 1.38493 2.14292 2.16313 2.84538 3.24771 3.29986 3.34664 3.76500 3.83442 4.14722 4.32499 4.44395 4.47697 4.61294 4.79378 4.87265 5.16606 5.22514 5.28450 5.30455 5.32700 5.48247 5.89598 5.98883 6.21600 6.60461 6.94224 7.27688 7.28494 7.67134 8.00598 8.35444 8.87753 9.41867 10.91486 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.053279 B = 0.002790 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.413482 B =10031.862355 C =10094.538759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.541 3.459 3 O -0.942 6.942 4 O -0.946 6.946 5 C -0.809 4.809 6 C 0.124 3.876 7 N -0.284 5.284 8 N -0.347 5.347 9 C 0.124 3.876 10 C 0.054 3.946 11 O -0.395 6.395 12 C 0.198 3.802 13 C -0.520 4.520 14 H 0.068 0.932 15 C 0.057 3.943 16 N -0.896 5.896 17 Si 0.911 3.089 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.271 1.271 21 C 0.176 3.824 22 H 0.130 0.870 23 H 0.127 0.873 24 H 0.128 0.872 25 H 0.198 0.802 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.008 0.992 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.434 9.023 -14.583 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.718 3.282 3 O -0.939 6.939 4 O -0.943 6.943 5 C -0.908 4.908 6 C -0.066 4.066 7 N -0.102 5.102 8 N -0.124 5.124 9 C 0.004 3.996 10 C -0.025 4.025 11 O -0.314 6.314 12 C 0.124 3.876 13 C -0.558 4.558 14 H 0.086 0.914 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.738 3.262 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.196 1.196 21 C 0.022 3.978 22 H 0.149 0.851 23 H 0.146 0.854 24 H 0.147 0.853 25 H 0.214 0.786 26 H 0.120 0.880 27 H 0.128 0.872 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.443 8.872 -13.704 23.171 hybrid contribution -0.192 -0.757 0.400 0.878 sum -16.635 8.115 -13.304 22.794 Atomic orbital electron populations 1.30265 1.26696 1.11782 1.11447 1.03922 0.77062 0.74204 0.73032 1.93562 1.77305 1.36773 1.86243 1.93565 1.77416 1.62060 1.61299 1.31130 1.34572 1.01590 1.23489 1.23585 0.94761 1.00058 0.88152 1.77527 1.22982 0.86951 1.22765 1.49268 1.48938 1.07017 1.07159 1.21841 0.99581 0.81224 0.96955 1.22308 0.93302 0.91057 0.95792 1.87777 1.41955 1.34906 1.66764 1.20275 0.78389 0.98036 0.90871 1.21013 1.03799 1.00970 1.30034 0.91407 1.24968 0.95369 0.97663 0.96471 1.69960 1.08398 1.33565 1.41572 0.86286 0.78308 0.82547 0.79052 1.20370 1.20980 1.19578 1.22557 0.91442 0.97716 0.86073 0.85131 0.85415 0.85292 0.78558 0.88030 0.87152 0.93810 0.92690 0.97447 0.97341 0.92464 0.78962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.33 10.79 101.05 1.09 -1.24 16 2 S 2.54 19.96 5.94 -107.50 -0.64 19.32 16 3 O -0.94 -10.61 17.74 -57.54 -1.02 -11.63 16 4 O -0.95 -10.50 17.72 -57.54 -1.02 -11.52 16 5 C -0.81 -7.96 5.83 -40.01 -0.23 -8.19 16 6 C 0.12 1.40 11.74 -17.36 -0.20 1.19 16 7 N -0.28 -4.03 12.42 30.62 0.38 -3.65 16 8 N -0.35 -4.47 3.68 -61.36 -0.23 -4.69 16 9 C 0.12 1.64 6.88 -4.04 -0.03 1.62 16 10 C 0.05 0.97 6.12 37.16 0.23 1.20 16 11 O -0.39 -9.08 10.33 -35.23 -0.36 -9.45 16 12 C 0.20 5.36 5.69 36.01 0.20 5.57 16 13 C -0.52 -15.04 9.43 -34.44 -0.32 -15.36 16 14 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 17 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 C 0.18 1.79 11.12 -17.22 -0.19 1.60 16 22 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 23 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 24 H 0.13 0.30 8.14 -51.92 -0.42 -0.13 16 25 H 0.20 1.62 8.06 -52.49 -0.42 1.19 16 26 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.11 1.18 8.07 -51.93 -0.42 0.76 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 33 H 0.19 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 310.48 15.07 4.68 4.68 Total: -1.00 -37.83 310.48 -6.24 -44.07 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -4.19 Total: -5.61 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 0.44 Total: -12.09 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.89 Total: -34.24 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -2.40 Total: -32.59 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 19.96 SS G_CDS: -0.64 Total: 19.32 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -37.83 -6.24 -44.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335240250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.169 kcal (2) G-P(sol) polarization free energy of solvation -37.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds