Wall clock time and date at job start Mon Mar 30 2020 01:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42102 * 110.54147 * 2 1 4 4 O 1.42099 * 110.54189 * 223.25454 * 2 1 3 5 5 C 1.76196 * 104.45273 * 111.62466 * 2 1 3 6 6 C 1.39870 * 126.04152 * 269.97813 * 5 2 1 7 7 N 1.30839 * 108.19862 * 180.02562 * 6 5 2 8 8 N 1.40079 * 108.20849 * 359.97438 * 7 6 5 9 9 C 1.46502 * 126.03442 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47267 * 304.99629 * 9 8 7 11 11 O 1.42897 * 109.47331 * 179.97438 * 10 9 8 12 12 C 1.42899 * 114.00350 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47255 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99979 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99774 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00300 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47101 * 90.00138 * 17 15 13 19 19 H 1.48491 * 109.47380 * 210.00320 * 17 15 13 20 20 H 1.48504 * 109.46857 * 330.00458 * 17 15 13 21 21 C 1.34948 * 107.92564 * 0.02562 * 8 7 6 22 22 H 1.09003 * 109.47225 * 308.37198 * 1 2 3 23 23 H 1.09003 * 109.47483 * 68.37595 * 1 2 3 24 24 H 1.09004 * 109.47153 * 188.37653 * 1 2 3 25 25 H 1.07997 * 125.89658 * 359.97438 * 6 5 2 26 26 H 1.08994 * 109.47186 * 64.99894 * 9 8 7 27 27 H 1.09001 * 109.46653 * 185.00231 * 9 8 7 28 28 H 1.08994 * 109.47234 * 300.00235 * 10 9 8 29 29 H 1.09007 * 109.46596 * 60.00293 * 10 9 8 30 30 H 1.08994 * 109.47072 * 300.00959 * 12 11 10 31 31 H 1.09000 * 109.46407 * 60.00425 * 12 11 10 32 32 H 0.97001 * 119.99936 * 179.97438 * 16 15 13 33 33 H 1.08007 * 126.12251 * 180.26869 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3126 -0.9691 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4595 0.1290 2.7436 7 7 2.7707 -0.6881 3.7170 8 7 2.7722 -1.9936 3.2090 9 6 3.0699 -3.2124 3.9654 10 6 4.4388 -3.0755 4.6351 11 8 4.7289 -4.2640 5.3734 12 6 5.9917 -4.2395 6.0418 13 6 6.1926 -5.5356 6.7839 14 1 5.4321 -6.3017 6.7483 15 6 7.3476 -5.7439 7.5074 16 7 8.2738 -4.8113 7.5503 17 14 7.5970 -7.3508 8.4267 18 1 8.2727 -8.3299 7.5379 19 1 8.4376 -7.1093 9.6267 20 1 6.2787 -7.8907 8.8463 21 6 2.4522 -1.9301 1.8995 22 1 -0.3634 0.6379 0.8057 23 1 -0.3634 0.3787 -0.9553 24 1 -0.3634 -1.0167 0.1497 25 1 2.3767 1.2030 2.8204 26 1 2.3057 -3.3625 4.7279 27 1 3.0805 -4.0666 3.2884 28 1 5.2030 -2.9254 3.8725 29 1 4.4282 -2.2212 5.3121 30 1 6.7884 -4.1136 5.3087 31 1 6.0130 -3.4092 6.7476 32 1 9.0863 -4.9576 8.0596 33 1 2.3651 -2.7683 1.2240 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335240250.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:09 Heat of formation + Delta-G solvation = -70.430660 kcal Electronic energy + Delta-G solvation = -18202.624804 eV Core-core repulsion = 14970.760263 eV Total energy + Delta-G solvation = -3231.864541 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.37193 -38.89005 -37.94582 -36.81351 -35.35851 -34.60361 -31.67247 -30.56786 -30.05937 -28.80632 -24.92825 -24.37781 -22.95407 -21.97682 -19.74484 -18.88712 -18.65679 -17.58117 -17.33585 -16.99398 -16.73236 -16.50166 -16.24846 -15.98690 -15.42923 -14.98683 -14.47715 -14.07881 -13.97625 -13.82887 -13.77809 -13.13803 -13.01182 -12.99126 -12.91804 -12.80437 -12.67284 -12.40426 -12.10697 -11.85822 -11.52592 -11.39348 -10.98679 -10.74718 -10.43117 -10.25012 -8.37848 -6.51995 -0.64293 0.55509 1.22110 1.30818 1.39277 1.42102 1.54397 2.19964 2.30991 2.87280 2.96608 3.21053 3.26268 3.61497 3.75864 3.90658 3.93313 4.13299 4.24374 4.27214 4.32195 4.53803 4.59587 4.66908 4.75831 5.03887 5.08926 5.36594 5.47600 5.72832 5.84800 6.33727 6.40700 6.68012 7.19988 8.74737 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.053279 B = 0.002790 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.413482 B =10031.862355 C =10094.538759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.624 4.624 2 S 2.551 3.449 3 O -0.983 6.983 4 O -0.982 6.982 5 C -0.809 4.809 6 C 0.122 3.878 7 N -0.334 5.334 8 N -0.363 5.363 9 C 0.138 3.862 10 C 0.051 3.949 11 O -0.399 6.399 12 C 0.211 3.789 13 C -0.551 4.551 14 H 0.070 0.930 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.989 3.011 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.261 1.261 21 C 0.177 3.823 22 H 0.149 0.851 23 H 0.151 0.849 24 H 0.152 0.848 25 H 0.218 0.782 26 H 0.108 0.892 27 H 0.142 0.858 28 H 0.038 0.962 29 H 0.039 0.961 30 H -0.013 1.013 31 H -0.015 1.015 32 H 0.272 0.728 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.471 7.922 -15.407 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.778 4.778 2 S 2.731 3.269 3 O -0.980 6.980 4 O -0.980 6.980 5 C -0.906 4.906 6 C -0.067 4.067 7 N -0.153 5.153 8 N -0.141 5.141 9 C 0.017 3.983 10 C -0.027 4.027 11 O -0.318 6.318 12 C 0.136 3.864 13 C -0.589 4.589 14 H 0.088 0.912 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.811 3.189 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.185 1.185 21 C 0.025 3.975 22 H 0.168 0.832 23 H 0.169 0.831 24 H 0.170 0.830 25 H 0.235 0.765 26 H 0.126 0.874 27 H 0.159 0.841 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.005 0.995 31 H 0.003 0.997 32 H 0.081 0.919 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.452 7.786 -14.540 24.749 hybrid contribution 0.345 -0.273 0.545 0.700 sum -18.107 7.513 -13.996 24.087 Atomic orbital electron populations 1.30031 1.20052 1.14057 1.13648 1.03606 0.79265 0.72499 0.71513 1.93510 1.79858 1.38288 1.86315 1.93517 1.79879 1.62684 1.61885 1.31457 1.34091 1.01360 1.23708 1.24069 0.93445 1.00987 0.88218 1.77478 1.25119 0.88034 1.24664 1.49193 1.50450 1.06376 1.08095 1.21688 0.96139 0.82647 0.97827 1.22487 0.96467 0.88746 0.94997 1.87717 1.39810 1.37251 1.66993 1.19887 0.79591 0.96900 0.90026 1.21381 1.04597 1.01666 1.31211 0.91223 1.26051 0.94616 1.01789 0.96980 1.70081 1.08992 1.35884 1.42172 0.85096 0.78727 0.77392 0.77674 1.19125 1.20094 1.18474 1.23232 0.89962 0.99088 0.85254 0.83227 0.83106 0.83007 0.76542 0.87375 0.84063 0.94369 0.94307 0.99535 0.99747 0.91920 0.75519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -1.84 10.79 113.37 1.22 -0.61 16 2 S 2.55 35.78 5.94 -56.49 -0.34 35.45 16 3 O -0.98 -21.48 17.74 -127.65 -2.27 -23.75 16 4 O -0.98 -20.53 17.72 -127.65 -2.26 -22.79 16 5 C -0.81 -14.84 5.83 21.99 0.13 -14.72 16 6 C 0.12 2.69 11.74 85.24 1.00 3.69 16 7 N -0.33 -9.56 12.42 -57.02 -0.71 -10.26 16 8 N -0.36 -9.10 3.68 -348.05 -1.28 -10.38 16 9 C 0.14 3.54 6.88 86.38 0.59 4.13 16 10 C 0.05 1.90 6.12 71.98 0.44 2.34 16 11 O -0.40 -18.81 10.33 -148.98 -1.54 -20.35 16 12 C 0.21 11.88 5.69 71.24 0.41 12.29 16 13 C -0.55 -32.40 9.43 25.60 0.24 -32.16 16 14 H 0.07 3.97 7.81 -2.91 -0.02 3.94 16 15 C 0.00 0.24 5.46 84.66 0.46 0.71 16 16 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 17 Si 0.99 43.68 29.54 68.60 2.03 45.71 16 18 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 21 C 0.18 3.30 11.12 83.54 0.93 4.22 16 22 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 24 H 0.15 -0.08 8.14 -2.39 -0.02 -0.09 16 25 H 0.22 3.48 8.06 -2.91 -0.02 3.46 16 26 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.14 2.71 8.07 -2.39 -0.02 2.69 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 31 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.23 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -84.27 310.48 0.45 -83.82 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: 1.11 Total: -1.35 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 5.43 Total: -20.10 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -1.70 Total: -76.63 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -6.07 Total: -66.89 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 35.78 SS G_CDS: -0.34 Total: 35.45 kcal Total: -84.27 0.45 -83.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335240250.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.385 kcal (2) G-P(sol) polarization free energy of solvation -84.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds