Wall clock time and date at job start Mon Mar 30 2020 01:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46500 * 109.46837 * 90.03047 * 7 6 5 9 9 S 1.65600 * 120.00094 * 165.00008 * 8 7 6 10 10 O 1.42103 * 104.27946 * 181.06929 * 9 8 7 11 11 O 1.42094 * 104.27636 * 308.92564 * 9 8 7 12 12 C 1.81402 * 104.44818 * 64.99947 * 9 8 7 13 13 C 1.52997 * 109.47128 * 180.02562 * 12 9 8 14 14 C 1.50699 * 109.47237 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00058 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99963 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00158 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99786 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46920 * 89.99871 * 18 16 14 20 20 H 1.48497 * 109.47114 * 209.99856 * 18 16 14 21 21 H 1.48496 * 109.47242 * 329.99997 * 18 16 14 22 22 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 23 23 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 24 24 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 25 25 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 26 26 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 27 27 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 28 28 H 0.97006 * 120.00099 * 344.99888 * 8 7 6 29 29 H 1.09003 * 109.47027 * 299.99723 * 12 9 8 30 30 H 1.09000 * 109.47017 * 60.00009 * 12 9 8 31 31 H 1.09004 * 109.47246 * 300.00133 * 13 12 9 32 32 H 1.09000 * 109.47225 * 60.00062 * 13 12 9 33 33 H 0.97001 * 120.00012 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8578 -3.0451 1.3754 9 16 1.0857 -4.4759 1.6903 10 8 1.1350 -4.5967 3.1053 11 8 -0.1552 -4.3620 1.0076 12 6 2.1300 -5.7356 0.9071 13 6 1.5148 -7.1186 1.1301 14 6 2.3820 -8.1650 0.4789 15 1 3.2817 -7.8728 -0.0423 16 6 2.0262 -9.4954 0.5476 17 7 0.9304 -9.8511 1.1817 18 14 3.1008 -10.7924 -0.2602 19 1 4.1159 -11.2701 0.7127 20 1 2.2564 -11.9339 -0.6953 21 1 3.7842 -10.2043 -1.4401 22 1 -0.3633 -0.0005 1.0277 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8898 -0.5141 25 1 2.0576 2.1094 0.0004 26 1 1.0275 -2.6837 -0.5163 27 1 2.7453 -3.1500 -0.5220 28 1 2.2273 -2.5227 2.1045 29 1 2.1985 -5.5370 -0.1625 30 1 3.1269 -5.7058 1.3468 31 1 1.4459 -7.3174 2.1996 32 1 0.5180 -7.1481 0.6900 33 1 0.6799 -10.7870 1.2297 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001622671854.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:19 Heat of formation + Delta-G solvation = -51.954634 kcal Electronic energy + Delta-G solvation = -18803.446512 eV Core-core repulsion = 15572.383151 eV Total energy + Delta-G solvation = -3231.063361 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.98510 -38.24330 -37.43446 -37.02797 -35.89872 -34.91448 -33.13337 -33.03541 -29.04784 -27.76294 -27.59951 -23.61432 -22.69782 -22.30398 -20.44069 -19.24029 -18.79358 -18.61112 -18.03208 -17.32736 -17.08798 -16.53297 -16.12393 -15.89926 -15.09172 -14.69282 -14.46124 -14.24571 -14.09089 -13.91862 -13.72607 -13.26113 -13.21812 -13.14511 -12.94708 -12.91289 -12.79567 -12.25040 -12.15422 -12.12615 -11.75771 -11.24858 -11.10208 -10.64721 -10.52024 -10.27313 -8.26316 -6.40055 -0.76057 0.55627 1.07011 1.40997 1.42462 1.53643 1.90159 2.37836 2.40748 2.75189 2.99861 3.07339 3.27379 3.50865 3.87390 4.00761 4.10719 4.14263 4.25985 4.51149 4.63599 4.73568 4.76165 4.82903 4.90434 5.00314 5.27211 5.28601 5.35831 5.68379 5.89739 6.06421 6.73493 7.27524 7.30101 8.85892 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.030706 B = 0.004000 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.653930 B = 6998.773218 C = 7476.816114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.203 4.203 3 C -0.045 4.045 4 O 0.102 5.898 5 N -0.378 5.378 6 C -0.009 4.009 7 C 0.188 3.812 8 N -1.106 6.106 9 S 2.628 3.372 10 O -0.996 6.996 11 O -0.987 6.987 12 C -0.590 4.590 13 C 0.019 3.981 14 C -0.540 4.540 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.973 3.027 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.258 1.258 22 H 0.074 0.926 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.264 0.736 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.422 0.578 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.007 0.993 32 H 0.012 0.988 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 23.354 -4.511 23.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.208 4.208 3 C -0.126 4.126 4 O 0.033 5.967 5 N -0.081 5.081 6 C -0.169 4.169 7 C 0.062 3.938 8 N -0.867 5.867 9 S 2.724 3.276 10 O -0.986 6.986 11 O -0.977 6.977 12 C -0.722 4.722 13 C -0.020 4.020 14 C -0.579 4.579 15 H 0.093 0.907 16 C -0.201 4.201 17 N -0.573 5.573 18 Si 0.797 3.203 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.182 1.182 22 H 0.093 0.907 23 H 0.118 0.882 24 H 0.086 0.914 25 H 0.279 0.721 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.257 0.743 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.025 0.975 32 H 0.030 0.970 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.543 22.473 -4.139 22.992 hybrid contribution 0.157 -0.788 -0.109 0.811 sum 2.701 21.684 -4.249 22.261 Atomic orbital electron populations 1.20234 0.86045 1.04383 1.03339 1.21677 0.99793 0.91236 1.08090 1.26614 0.81361 1.02687 1.01933 1.84794 1.30598 1.14755 1.66515 1.73896 1.22855 0.92372 1.18942 1.23473 0.89328 0.98358 1.05704 1.19661 1.03660 0.87788 0.82738 1.55371 1.77665 1.39437 1.14218 1.04334 0.75115 0.74540 0.73590 1.93514 1.87590 1.86379 1.31102 1.93504 1.41913 1.85703 1.76533 1.30363 1.15258 1.12055 1.14550 1.18837 0.96241 0.90040 0.96838 1.21521 1.09456 0.91788 1.35177 0.90745 1.26091 0.96669 1.01476 0.95874 1.70093 1.25539 1.18162 1.43463 0.85327 0.78238 0.77790 0.78983 1.19743 1.20732 1.18228 0.90710 0.88216 0.91442 0.72051 0.87316 0.88657 0.74280 0.83731 0.84148 0.97467 0.96999 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.37 71.24 0.74 -0.34 16 2 C -0.20 -3.31 6.32 -19.74 -0.12 -3.43 16 3 C -0.05 -0.52 12.26 67.17 0.82 0.30 16 4 O 0.10 1.86 11.20 71.60 0.80 2.66 16 5 N -0.38 -8.79 12.07 -49.55 -0.60 -9.38 16 6 C -0.01 -0.20 6.72 43.58 0.29 0.09 16 7 C 0.19 4.22 6.64 85.63 0.57 4.79 16 8 N -1.11 -28.12 5.88 -190.79 -1.12 -29.24 16 9 S 2.63 91.11 5.46 -56.49 -0.31 90.80 16 10 O -1.00 -41.24 18.08 -127.65 -2.31 -43.55 16 11 O -0.99 -38.94 17.50 -127.65 -2.23 -41.18 16 12 C -0.59 -21.96 6.01 71.98 0.43 -21.52 16 13 C 0.02 1.00 4.98 29.85 0.15 1.15 16 14 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 15 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 16 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 18 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 19 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.07 1.04 7.65 -2.39 -0.02 1.02 16 25 H 0.26 0.15 8.06 -2.91 -0.02 0.12 16 26 H 0.11 2.29 7.20 -2.39 -0.02 2.28 16 27 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.42 9.75 8.61 -96.74 -0.83 8.91 16 29 H 0.14 4.59 8.14 -2.39 -0.02 4.57 16 30 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.05 306.77 0.42 -77.63 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.30 Total: 11.56 kcal Atomic # 6 Polarization: -51.92 SS G_CDS: 3.58 Total: -48.35 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -1.43 Total: -94.95 kcal Atomic # 8 Polarization: -78.33 SS G_CDS: -3.74 Total: -82.07 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: 91.11 SS G_CDS: -0.31 Total: 90.80 kcal Total: -78.05 0.42 -77.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001622671854.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.673 kcal (2) G-P(sol) polarization free energy of solvation -78.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds