Wall clock time and date at job start Mon Mar 30 2020 01:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.50699 * 109.47072 * 239.99991 * 2 1 3 5 5 H 1.07997 * 120.00224 * 240.00160 * 4 2 1 6 6 C 1.37880 * 120.00177 * 59.99783 * 4 2 1 7 7 N 1.31520 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47022 * 60.00352 * 8 6 4 10 10 H 1.48505 * 109.47077 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47391 * 300.00032 * 8 6 4 12 12 N 1.46898 * 109.47439 * 120.00163 * 2 1 3 13 13 C 1.46899 * 110.99854 * 274.99757 * 12 2 1 14 14 C 1.50702 * 109.47476 * 179.97438 * 13 12 2 15 15 C 1.34516 * 126.58163 * 270.02820 * 14 13 12 16 16 O 1.34298 * 108.41831 * 179.71287 * 15 14 13 17 17 C 1.34307 * 109.47961 * 0.43766 * 16 15 14 18 18 S 1.76196 * 125.78930 * 179.82778 * 17 16 15 19 19 N 1.65597 * 107.21775 * 269.68885 * 18 17 16 20 20 O 1.42099 * 106.40200 * 156.14797 * 18 17 16 21 21 O 1.42099 * 106.40670 * 23.23352 * 18 17 16 22 22 C 1.34509 * 108.41735 * 359.56187 * 17 16 15 23 23 H 1.08996 * 109.47377 * 59.99637 * 1 2 3 24 24 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46659 * 299.99967 * 1 2 3 26 26 H 0.96996 * 119.99624 * 180.02562 * 7 6 4 27 27 H 1.00897 * 111.00162 * 151.04751 * 12 2 1 28 28 H 1.09009 * 109.47560 * 60.00144 * 13 12 2 29 29 H 1.08997 * 109.47669 * 300.00057 * 13 12 2 30 30 H 1.08002 * 125.78561 * 359.94231 * 15 14 13 31 31 H 0.97001 * 120.00224 * 0.02562 * 19 18 17 32 32 H 0.97005 * 120.00050 * 179.72515 * 19 18 17 33 33 H 1.08007 * 126.57635 * 180.23075 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8256 -2.5203 -4.0077 10 1 1.8258 -0.4207 -5.2205 11 1 3.8062 -1.1210 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2226 2.3468 14 6 2.5875 -0.5217 3.5560 15 6 1.8415 -1.1787 4.4623 16 8 2.6627 -1.7131 5.3807 17 6 3.9339 -1.3994 5.0815 18 16 5.3574 -1.8765 6.0037 19 7 5.6377 -0.6882 7.1225 20 8 6.4522 -1.8417 5.0985 21 8 4.9908 -3.0381 6.7354 22 6 3.9363 -0.6641 3.9552 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.7088 1.1613 -3.4844 27 1 2.9173 -1.1205 1.0286 28 1 1.0871 0.6164 2.5526 29 1 2.7589 1.0462 2.1182 30 1 0.7650 -1.2650 4.4509 31 1 5.0531 0.0847 7.1660 32 1 6.3839 -0.7670 7.7372 33 1 4.8025 -0.2595 3.4526 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654068661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:44 Heat of formation + Delta-G solvation = -57.857294 kcal Electronic energy + Delta-G solvation = -18696.639919 eV Core-core repulsion = 15465.320599 eV Total energy + Delta-G solvation = -3231.319319 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.72597 -37.41381 -36.29540 -36.11508 -33.80550 -33.53029 -32.12482 -30.35463 -28.35808 -25.48056 -24.39291 -22.66631 -21.06805 -19.87491 -19.61496 -18.45123 -17.77965 -16.97938 -16.43084 -16.13351 -15.79734 -15.63790 -14.93106 -14.29366 -13.81452 -13.63830 -13.26180 -12.76188 -12.48956 -12.36643 -12.25184 -12.24144 -11.98505 -11.53501 -11.20164 -10.88286 -10.84346 -10.83768 -10.37825 -10.26147 -10.17097 -9.90478 -9.08105 -8.87361 -8.52160 -7.40259 -6.07913 -4.14660 0.00627 1.02056 2.30626 2.65929 3.10884 3.29192 3.33376 3.35386 3.36839 4.36955 4.57085 4.69877 4.88833 5.13509 5.23440 5.39828 5.56753 5.64201 5.73633 5.97393 6.08613 6.29876 6.66180 6.73207 6.79961 7.04176 7.13235 7.40061 7.72301 7.80897 8.19216 8.28490 8.56468 8.94500 9.51692 10.98399 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003693 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.755485 B = 7580.469498 C = 8084.478009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.685 5.685 13 C 0.122 3.878 14 C -0.183 4.183 15 C 0.034 3.966 16 O -0.125 6.125 17 C -0.599 4.599 18 S 2.743 3.257 19 N -1.249 6.249 20 O -0.945 6.945 21 O -0.952 6.952 22 C -0.065 4.065 23 H 0.082 0.918 24 H 0.032 0.968 25 H 0.003 0.997 26 H 0.262 0.738 27 H 0.333 0.667 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.217 0.783 31 H 0.418 0.582 32 H 0.422 0.578 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 0.470 18.867 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.317 5.317 13 C -0.007 4.007 14 C -0.186 4.186 15 C -0.038 4.038 16 O -0.019 6.019 17 C -0.730 4.730 18 S 2.825 3.175 19 N -0.925 5.925 20 O -0.934 6.934 21 O -0.941 6.941 22 C -0.087 4.087 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.233 0.767 31 H 0.246 0.754 32 H 0.253 0.747 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.386 -0.742 18.846 19.614 hybrid contribution 0.492 1.028 -1.338 1.758 sum 5.878 0.286 17.508 18.471 Atomic orbital electron populations 1.21726 0.97772 0.99405 0.99391 1.19141 0.92685 0.92401 0.85416 0.97984 1.21211 1.31698 1.12637 0.90397 0.92215 1.24914 0.94961 0.94965 0.99078 1.69882 1.36514 1.22826 1.23679 0.86558 0.79129 0.79792 0.81917 1.20153 1.21259 1.20264 1.60819 1.32429 1.32699 1.05746 1.20321 0.99769 0.92905 0.87720 1.20933 0.92272 1.05178 1.00179 1.24618 0.97076 0.93739 0.88402 1.84185 1.13555 1.59075 1.45104 1.34906 1.01340 1.20863 1.15887 1.00775 0.71675 0.72317 0.72707 1.53037 1.44066 1.40696 1.54681 1.93670 1.48629 1.85873 1.65222 1.93608 1.83011 1.46078 1.71389 1.22021 0.99100 0.94407 0.93140 0.89982 0.94901 0.97766 0.92806 0.84934 0.90517 0.94802 0.76663 0.75435 0.74742 0.81664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.01 9.19 37.16 0.34 -2.66 16 2 C 0.21 5.21 2.60 -68.87 -0.18 5.03 16 3 H 0.00 0.07 7.80 -51.93 -0.40 -0.34 16 4 C -0.52 -14.14 8.59 -34.44 -0.30 -14.44 16 5 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.69 -14.20 6.29 -109.22 -0.69 -14.89 16 13 C 0.12 2.06 6.00 -4.98 -0.03 2.03 16 14 C -0.18 -2.64 5.68 -104.74 -0.59 -3.24 16 15 C 0.03 0.44 12.01 29.42 0.35 0.79 16 16 O -0.13 -1.64 10.65 5.71 0.06 -1.58 16 17 C -0.60 -7.35 7.33 29.41 0.22 -7.14 16 18 S 2.74 28.24 6.43 -107.50 -0.69 27.55 16 19 N -1.25 -7.08 9.55 60.35 0.58 -6.50 16 20 O -0.94 -12.46 17.83 -57.18 -1.02 -13.48 16 21 O -0.95 -13.02 18.02 -57.23 -1.03 -14.05 16 22 C -0.06 -0.86 10.58 -39.70 -0.42 -1.28 16 23 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.33 6.94 8.22 -39.29 -0.32 6.62 16 28 H 0.08 1.24 7.44 -51.92 -0.39 0.86 16 29 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 30 H 0.22 2.04 8.06 -52.49 -0.42 1.62 16 31 H 0.42 1.54 8.92 -34.47 -0.31 1.23 16 32 H 0.42 1.52 8.96 -34.47 -0.31 1.22 16 33 H 0.17 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 301.33 15.07 4.54 4.54 Total: -1.00 -34.74 301.33 -7.00 -41.74 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -3.65 Total: 4.27 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -0.70 Total: -19.29 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.52 Total: -45.84 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -1.99 Total: -29.11 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 28.24 SS G_CDS: -0.69 Total: 27.55 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.74 -7.00 -41.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654068661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.119 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds