Wall clock time and date at job start Mon Mar 30 2020 01:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.50699 * 109.47072 * 239.99991 * 2 1 3 5 5 H 1.07997 * 120.00224 * 240.00160 * 4 2 1 6 6 C 1.37880 * 120.00177 * 59.99783 * 4 2 1 7 7 N 1.31520 * 119.99765 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47022 * 60.00352 * 8 6 4 10 10 H 1.48505 * 109.47077 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47391 * 300.00032 * 8 6 4 12 12 N 1.46898 * 109.47439 * 120.00163 * 2 1 3 13 13 C 1.46899 * 110.99854 * 274.99757 * 12 2 1 14 14 C 1.50702 * 109.47476 * 179.97438 * 13 12 2 15 15 C 1.34516 * 126.58163 * 270.02820 * 14 13 12 16 16 O 1.34298 * 108.41831 * 179.71287 * 15 14 13 17 17 C 1.34307 * 109.47961 * 0.43766 * 16 15 14 18 18 S 1.76196 * 125.78930 * 179.82778 * 17 16 15 19 19 N 1.65597 * 107.21775 * 269.68885 * 18 17 16 20 20 O 1.42099 * 106.40200 * 156.14797 * 18 17 16 21 21 O 1.42099 * 106.40670 * 23.23352 * 18 17 16 22 22 C 1.34509 * 108.41735 * 359.56187 * 17 16 15 23 23 H 1.08996 * 109.47377 * 59.99637 * 1 2 3 24 24 H 1.08997 * 109.46824 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46659 * 299.99967 * 1 2 3 26 26 H 0.96996 * 119.99624 * 180.02562 * 7 6 4 27 27 H 1.00897 * 111.00162 * 151.04751 * 12 2 1 28 28 H 1.09009 * 109.47560 * 60.00144 * 13 12 2 29 29 H 1.08997 * 109.47669 * 300.00057 * 13 12 2 30 30 H 1.08002 * 125.78561 * 359.94231 * 15 14 13 31 31 H 0.97001 * 120.00224 * 0.02562 * 19 18 17 32 32 H 0.97005 * 120.00050 * 179.72515 * 19 18 17 33 33 H 1.08007 * 126.57635 * 180.23075 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8256 -2.5203 -4.0077 10 1 1.8258 -0.4207 -5.2205 11 1 3.8062 -1.1210 -4.0083 12 7 2.0197 -0.6925 1.1994 13 6 2.0826 0.2226 2.3468 14 6 2.5875 -0.5217 3.5560 15 6 1.8415 -1.1787 4.4623 16 8 2.6627 -1.7131 5.3807 17 6 3.9339 -1.3994 5.0815 18 16 5.3574 -1.8765 6.0037 19 7 5.6377 -0.6882 7.1225 20 8 6.4522 -1.8417 5.0985 21 8 4.9908 -3.0381 6.7354 22 6 3.9363 -0.6641 3.9552 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8901 26 1 0.7088 1.1613 -3.4844 27 1 2.9173 -1.1205 1.0286 28 1 1.0871 0.6164 2.5526 29 1 2.7589 1.0462 2.1182 30 1 0.7650 -1.2650 4.4509 31 1 5.0531 0.0847 7.1660 32 1 6.3839 -0.7670 7.7372 33 1 4.8025 -0.2595 3.4526 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654068661.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:44 Heat of formation + Delta-G solvation = -87.679008 kcal Electronic energy + Delta-G solvation = -18697.933085 eV Core-core repulsion = 15465.320599 eV Total energy + Delta-G solvation = -3232.612486 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.75246 -38.38411 -37.94675 -37.08436 -35.33080 -34.12425 -33.76232 -31.59447 -29.97138 -27.42059 -25.96236 -23.62895 -22.19171 -21.72420 -20.46812 -19.52715 -18.56426 -18.35435 -17.75541 -17.15982 -16.87857 -16.72791 -16.46962 -15.88383 -15.40459 -15.12575 -14.48282 -14.19381 -13.85050 -13.39931 -13.34323 -13.27505 -13.23074 -13.11573 -12.87894 -12.74605 -12.48266 -12.24313 -12.16508 -11.94373 -11.41658 -11.12055 -10.91077 -10.58484 -10.09766 -9.11082 -8.15254 -6.29147 -0.84231 0.03933 1.22428 1.42187 1.43350 1.51088 1.78277 2.22526 2.40681 2.54924 3.13696 3.61051 3.68805 3.74697 3.93044 4.15861 4.33166 4.67126 4.74612 4.79710 4.90424 5.06982 5.18384 5.20695 5.24369 5.46129 5.64256 5.72171 5.84909 6.21821 6.30944 6.41868 6.72128 6.94323 7.41293 8.89961 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.031640 B = 0.003693 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.755485 B = 7580.469498 C = 8084.478009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.025 1.025 4 C -0.542 4.542 5 H 0.056 0.944 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.960 3.040 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.684 5.684 13 C 0.128 3.872 14 C -0.208 4.208 15 C 0.047 3.953 16 O -0.130 6.130 17 C -0.596 4.596 18 S 2.774 3.226 19 N -1.227 6.227 20 O -0.974 6.974 21 O -0.984 6.984 22 C -0.075 4.075 23 H 0.056 0.944 24 H 0.027 0.973 25 H 0.028 0.972 26 H 0.263 0.737 27 H 0.331 0.669 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.247 0.753 31 H 0.431 0.569 32 H 0.435 0.565 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.970 0.211 19.899 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.106 3.894 3 H -0.008 1.008 4 C -0.580 4.580 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.785 3.215 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.197 1.197 12 N -0.315 5.315 13 C -0.001 4.001 14 C -0.210 4.210 15 C -0.025 4.025 16 O -0.023 6.023 17 C -0.726 4.726 18 S 2.855 3.145 19 N -0.910 5.910 20 O -0.963 6.963 21 O -0.973 6.973 22 C -0.096 4.096 23 H 0.075 0.925 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.072 0.928 27 H 0.148 0.852 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.263 0.737 31 H 0.262 0.738 32 H 0.269 0.731 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 5.616 -0.992 19.902 20.703 hybrid contribution 0.432 1.151 -1.564 1.989 sum 6.048 0.159 18.339 19.311 Atomic orbital electron populations 1.21542 0.97337 0.98932 0.99361 1.18953 0.93006 0.90929 0.86526 1.00766 1.21557 1.31887 1.12762 0.91783 0.92591 1.25678 0.95120 0.95640 1.01879 1.70000 1.37279 1.23887 1.24292 0.85587 0.78706 0.78673 0.78507 1.19814 1.20757 1.19730 1.60736 1.32289 1.33161 1.05308 1.20246 1.00303 0.92420 0.87176 1.20742 0.93205 1.06846 1.00186 1.25146 0.98194 0.91975 0.87217 1.84203 1.13881 1.59020 1.45208 1.35096 1.01489 1.20201 1.15824 0.99724 0.70435 0.72102 0.72247 1.52557 1.44753 1.40012 1.53719 1.93636 1.49680 1.86497 1.66485 1.93573 1.83310 1.48489 1.71948 1.22187 0.99120 0.94786 0.93555 0.92488 0.95396 0.95285 0.92754 0.85230 0.89818 0.95183 0.73729 0.73843 0.73093 0.80814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 9.19 71.98 0.66 -4.79 16 2 C 0.21 10.65 2.60 44.17 0.11 10.76 16 3 H -0.03 -1.37 7.80 -2.39 -0.02 -1.39 16 4 C -0.54 -29.58 8.59 25.60 0.22 -29.36 16 5 H 0.06 3.02 7.62 -2.91 -0.02 3.00 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -51.98 11.32 21.45 0.24 -51.74 16 8 Si 0.96 43.32 29.54 68.60 2.03 45.34 16 9 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 12 N -0.68 -28.09 6.29 -499.46 -3.14 -31.24 16 13 C 0.13 4.18 6.00 85.56 0.51 4.69 16 14 C -0.21 -5.68 5.68 -19.94 -0.11 -5.79 16 15 C 0.05 1.09 12.01 66.97 0.80 1.90 16 16 O -0.13 -3.12 10.65 -2.47 -0.03 -3.15 16 17 C -0.60 -13.72 7.33 66.97 0.49 -13.23 16 18 S 2.77 53.35 6.43 -56.49 -0.36 52.99 16 19 N -1.23 -11.19 9.55 37.02 0.35 -10.83 16 20 O -0.97 -24.72 17.83 -128.00 -2.28 -27.01 16 21 O -0.98 -25.80 18.02 -127.95 -2.31 -28.10 16 22 C -0.08 -1.89 10.58 22.19 0.23 -1.66 16 23 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.03 1.20 7.45 -2.38 -0.02 1.18 16 26 H 0.26 14.23 8.31 -92.71 -0.77 13.45 16 27 H 0.33 13.77 8.22 -89.70 -0.74 13.03 16 28 H 0.08 2.60 7.44 -2.38 -0.02 2.58 16 29 H 0.03 1.01 8.05 -2.39 -0.02 0.99 16 30 H 0.25 3.89 8.06 -2.91 -0.02 3.86 16 31 H 0.43 2.06 8.92 -96.74 -0.86 1.19 16 32 H 0.43 2.09 8.96 -96.74 -0.87 1.23 16 33 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -73.48 301.33 -3.42 -76.90 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -1.29 Total: 12.97 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 3.37 Total: -36.13 kcal Atomic # 7 Polarization: -91.26 SS G_CDS: -2.55 Total: -93.81 kcal Atomic # 8 Polarization: -53.64 SS G_CDS: -4.61 Total: -58.26 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 53.35 SS G_CDS: -0.36 Total: 52.99 kcal Total: -73.48 -3.42 -76.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654068661.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.784 kcal (2) G-P(sol) polarization free energy of solvation -73.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds