Wall clock time and date at job start Mon Mar 30 2020 01:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 C 1.46911 * 110.99614 * 85.00357 * 12 2 1 14 14 C 1.50700 * 109.46831 * 179.97438 * 13 12 2 15 15 C 1.34517 * 126.58028 * 269.68387 * 14 13 12 16 16 O 1.34299 * 108.41782 * 179.90001 * 15 14 13 17 17 C 1.34307 * 109.47832 * 0.37715 * 16 15 14 18 18 S 1.76203 * 125.78597 * 179.79166 * 17 16 15 19 19 N 1.65592 * 107.21727 * 269.97058 * 18 17 16 20 20 O 1.42093 * 106.40570 * 23.51736 * 18 17 16 21 21 O 1.42110 * 106.39761 * 156.43747 * 18 17 16 22 22 C 1.34506 * 108.42105 * 359.76869 * 17 16 15 23 23 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 24 24 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 25 25 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 27 27 H 1.00896 * 111.00679 * 321.05250 * 12 2 1 28 28 H 1.09000 * 109.46786 * 299.99838 * 13 12 2 29 29 H 1.09000 * 109.46923 * 59.99884 * 13 12 2 30 30 H 1.07999 * 125.78518 * 0.03428 * 15 14 13 31 31 H 0.97000 * 119.99942 * 149.99881 * 19 18 17 32 32 H 0.96999 * 120.00512 * 330.01047 * 19 18 17 33 33 H 1.07996 * 126.57994 * 180.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5885 -0.5216 -3.5557 15 6 3.8716 -0.6513 -3.9381 16 8 3.9074 -1.3865 -5.0615 17 6 2.6569 -1.7268 -5.4139 18 16 2.2082 -2.6854 -6.8227 19 7 1.9659 -1.6309 -8.0762 20 8 3.3513 -3.4578 -7.1631 21 8 0.9413 -3.2592 -6.5305 22 6 1.8052 -1.2123 -4.5089 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.9026 -0.5284 4.4375 27 1 1.4496 -1.4980 -1.4101 28 1 1.0871 0.6162 -2.5525 29 1 2.7589 1.0461 -2.1182 30 1 4.7279 -0.2366 -3.4271 31 1 2.1390 -1.9132 -8.9879 32 1 1.6511 -0.7307 -7.8988 33 1 0.7296 -1.3085 -4.5098 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654068662.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:46 Heat of formation + Delta-G solvation = -48.220166 kcal Electronic energy + Delta-G solvation = -18754.922241 eV Core-core repulsion = 15524.020819 eV Total energy + Delta-G solvation = -3230.901422 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.77252 -37.48958 -36.65600 -36.17746 -33.87811 -33.59187 -32.17209 -30.64366 -28.95155 -25.34225 -24.59415 -22.70466 -21.12718 -20.30150 -19.68513 -18.46152 -17.81797 -17.14853 -16.64843 -16.18466 -16.03936 -15.50691 -15.01369 -14.61797 -13.88944 -13.81060 -13.33045 -12.72048 -12.54931 -12.53701 -12.41767 -12.31647 -12.27916 -12.04356 -11.89228 -11.28236 -11.03783 -10.90129 -10.58634 -10.17936 -10.11484 -9.59357 -9.23747 -9.07242 -8.61010 -7.54970 -6.08333 -4.06399 -0.03727 0.98368 2.23516 2.61388 3.07392 3.21823 3.30230 3.34448 3.34579 4.35981 4.46301 4.61350 4.82088 4.98242 5.20831 5.24241 5.38921 5.58139 5.68295 5.79553 5.93498 6.10739 6.21152 6.22937 6.43194 6.61640 6.64255 6.71982 7.03800 7.63129 7.81517 8.19545 8.63782 9.03057 9.53498 11.05188 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.041495 B = 0.003614 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.625817 B = 7746.633097 C = 7852.708984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.182 3.818 3 H 0.035 0.965 4 C -0.500 4.500 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.270 1.270 12 N -0.669 5.669 13 C 0.120 3.880 14 C -0.187 4.187 15 C 0.039 3.961 16 O -0.123 6.123 17 C -0.597 4.597 18 S 2.741 3.259 19 N -1.247 6.247 20 O -0.950 6.950 21 O -0.941 6.941 22 C -0.071 4.071 23 H 0.026 0.974 24 H 0.046 0.954 25 H 0.055 0.945 26 H 0.264 0.736 27 H 0.334 0.666 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.218 0.782 31 H 0.423 0.577 32 H 0.418 0.582 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 3.056 -23.056 23.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.074 3.926 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.196 1.196 12 N -0.299 5.299 13 C -0.009 4.009 14 C -0.189 4.189 15 C -0.034 4.034 16 O -0.016 6.016 17 C -0.728 4.728 18 S 2.823 3.177 19 N -0.922 5.922 20 O -0.940 6.940 21 O -0.930 6.930 22 C -0.093 4.093 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.151 0.849 28 H 0.052 0.948 29 H 0.098 0.902 30 H 0.235 0.765 31 H 0.254 0.746 32 H 0.245 0.755 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 0.089 2.016 -22.697 22.787 hybrid contribution -1.754 1.948 0.436 2.657 sum -1.664 3.964 -22.261 22.672 Atomic orbital electron populations 1.22871 1.01409 1.01051 0.98929 1.19675 0.88659 0.95120 0.89177 0.94729 1.20964 1.31392 1.13848 0.87678 0.90017 1.24948 0.95965 0.96646 0.95854 1.69885 1.45774 1.40286 0.97866 0.86878 0.80606 0.83838 0.76873 1.20755 1.22382 1.19551 1.60704 1.58282 1.08677 1.02215 1.20349 0.98843 0.94620 0.87100 1.20827 0.93129 1.05210 0.99762 1.24657 0.99769 0.92822 0.86197 1.84192 1.26452 1.54098 1.36897 1.35094 0.88184 1.25898 1.23630 1.00844 0.73878 0.71548 0.71428 1.53114 1.86384 1.29939 1.22724 1.93605 1.51283 1.66749 1.82333 1.93684 1.42153 1.72677 1.84519 1.21988 1.01134 0.93755 0.92417 0.95498 0.93528 0.92600 0.92627 0.84870 0.94848 0.90243 0.76530 0.74638 0.75453 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.83 8.64 37.16 0.32 -3.51 16 2 C 0.18 4.14 2.17 -68.86 -0.15 4.00 16 3 H 0.03 0.81 6.86 -51.93 -0.36 0.45 16 4 C -0.50 -13.91 9.42 -34.44 -0.32 -14.24 16 5 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 6 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 7 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 8 Si 0.89 21.53 24.37 -169.99 -4.14 17.39 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 10 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 11 H -0.27 -6.22 6.53 56.52 0.37 -5.85 16 12 N -0.67 -13.03 6.22 -109.21 -0.68 -13.71 16 13 C 0.12 1.85 6.00 -4.97 -0.03 1.82 16 14 C -0.19 -2.53 5.68 -104.74 -0.59 -3.13 16 15 C 0.04 0.47 12.01 29.42 0.35 0.83 16 16 O -0.12 -1.57 10.65 5.71 0.06 -1.51 16 17 C -0.60 -6.99 7.36 29.41 0.22 -6.78 16 18 S 2.74 26.66 6.43 -107.50 -0.69 25.96 16 19 N -1.25 -6.32 9.52 60.35 0.57 -5.74 16 20 O -0.95 -12.50 18.02 -57.22 -1.03 -13.53 16 21 O -0.94 -11.80 17.83 -57.17 -1.02 -12.82 16 22 C -0.07 -0.87 10.58 -39.70 -0.42 -1.29 16 23 H 0.03 0.47 7.45 -51.93 -0.39 0.08 16 24 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 25 H 0.05 1.14 8.13 -51.93 -0.42 0.72 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.33 6.33 8.46 -39.29 -0.33 5.99 16 28 H 0.03 0.48 7.44 -51.93 -0.39 0.10 16 29 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 30 H 0.22 2.02 8.06 -52.49 -0.42 1.59 16 31 H 0.42 1.33 8.96 -34.46 -0.31 1.03 16 32 H 0.42 1.24 8.96 -34.47 -0.31 0.93 16 33 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 294.90 15.07 4.44 4.44 Total: -1.00 -36.51 294.90 -5.98 -42.48 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -3.54 Total: 4.14 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -0.72 Total: -20.48 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: 0.67 Total: -46.08 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -1.99 Total: -27.86 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Atomic # 16 Polarization: 26.66 SS G_CDS: -0.69 Total: 25.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -36.51 -5.98 -42.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654068662.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.739 kcal (2) G-P(sol) polarization free energy of solvation -36.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds