Wall clock time and date at job start Mon Mar 30 2020 01:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46686 * 2 1 4 4 H 1.08994 * 109.47574 * 303.70927 * 3 2 1 5 5 C 1.50700 * 109.47203 * 183.70675 * 3 2 1 6 6 H 1.07995 * 120.00680 * 239.72631 * 5 3 2 7 7 C 1.37879 * 119.99734 * 60.00261 * 5 3 2 8 8 N 1.31515 * 120.00032 * 359.72218 * 7 5 3 9 9 Si 1.86801 * 120.00197 * 179.72758 * 7 5 3 10 10 H 1.48493 * 109.47430 * 89.99484 * 9 7 5 11 11 H 1.48505 * 109.47244 * 210.00072 * 9 7 5 12 12 H 1.48503 * 109.46837 * 329.99705 * 9 7 5 13 13 N 1.46507 * 109.47353 * 63.71018 * 3 2 1 14 14 S 1.65592 * 119.99984 * 215.52148 * 13 3 2 15 15 O 1.42100 * 104.27814 * 180.08378 * 14 13 3 16 16 O 1.42105 * 104.27898 * 307.93947 * 14 13 3 17 17 C 1.81402 * 104.45403 * 64.01149 * 14 13 3 18 18 C 1.50697 * 109.47159 * 174.92764 * 17 14 13 19 19 C 1.35455 * 126.77541 * 89.99925 * 18 17 14 20 20 C 1.41380 * 103.98435 * 179.97438 * 19 18 17 21 21 N 1.30175 * 106.39581 * 0.02562 * 20 19 18 22 22 O 1.20924 * 111.60264 * 359.72489 * 21 20 19 23 23 H 1.09007 * 109.46670 * 184.17105 * 1 2 3 24 24 H 1.08997 * 109.47286 * 304.17186 * 1 2 3 25 25 H 1.08999 * 109.47506 * 64.17561 * 1 2 3 26 26 H 1.08994 * 109.47299 * 240.00328 * 2 1 3 27 27 H 1.08998 * 109.47292 * 119.99635 * 2 1 3 28 28 H 0.97000 * 120.00092 * 180.02562 * 8 7 5 29 29 H 0.96999 * 119.99928 * 35.51517 * 13 3 2 30 30 H 1.09007 * 109.46505 * 294.92518 * 17 14 13 31 31 H 1.09000 * 109.47089 * 54.92744 * 17 14 13 32 32 H 1.08004 * 128.00930 * 359.97438 * 19 18 17 33 33 H 1.07997 * 126.79864 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6233 1.9752 -0.8548 5 6 3.5441 1.4437 -0.0919 6 1 4.1327 1.8980 0.6914 7 6 4.1688 0.8696 -1.1787 8 7 3.4521 0.3162 -2.1326 9 14 6.0331 0.8776 -1.2964 10 1 6.5750 -0.3458 -0.6526 11 1 6.4388 0.9067 -2.7247 12 1 6.5674 2.0787 -0.6055 13 7 1.6259 2.1069 1.2384 14 16 1.2168 3.7114 1.2203 15 8 0.8791 4.0022 2.5697 16 8 2.3191 4.3470 0.5877 17 6 -0.2560 3.7913 0.1643 18 6 -0.8018 5.1959 0.1689 19 6 -0.4709 6.1974 -0.6811 20 6 -1.2588 7.2881 -0.2471 21 7 -1.9508 6.8603 0.7690 22 8 -1.7142 5.6995 1.0117 23 1 -0.3633 -1.0250 0.0748 24 1 -0.3634 0.5772 0.8502 25 1 -0.3634 0.4476 -0.9250 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8916 -0.0880 -2.8970 29 1 1.5913 1.6069 2.0688 30 1 0.0114 3.5087 -0.8540 31 1 -1.0134 3.1059 0.5446 32 1 0.2320 6.1691 -1.5006 33 1 -1.2813 8.2801 -0.6737 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654881177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:00 Heat of formation + Delta-G solvation = -13.227660 kcal Electronic energy + Delta-G solvation = -19696.927908 eV Core-core repulsion = 16467.543875 eV Total energy + Delta-G solvation = -3229.384033 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.04724 -36.67692 -36.07241 -35.43398 -34.23442 -33.34383 -32.25128 -30.71924 -28.23949 -26.70463 -23.60734 -23.14135 -21.73931 -20.30091 -19.04819 -17.90426 -17.59086 -16.94117 -16.63480 -15.72980 -15.61227 -15.03687 -14.78415 -14.09773 -13.65260 -13.46991 -13.17951 -13.07177 -12.71638 -12.01911 -11.75316 -11.62366 -11.48507 -11.46411 -11.28103 -11.22289 -10.99919 -10.81426 -10.59082 -10.28066 -9.96272 -9.90294 -9.79973 -9.34594 -8.49460 -8.32024 -6.13383 -4.19325 0.47512 1.41469 2.16404 2.74548 3.27801 3.34712 3.37596 3.44169 4.04725 4.23119 4.33755 4.39556 4.58787 4.94321 5.02048 5.16895 5.27153 5.48577 5.56432 5.89993 5.97151 6.03321 6.16426 6.34909 6.66622 6.79996 6.97144 7.46327 7.56306 7.81063 8.00678 8.07249 8.16432 8.85090 9.47430 10.91115 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.005777 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.463110 B = 4845.738839 C = 5153.899892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.129 4.129 3 C 0.276 3.724 4 H 0.040 0.960 5 C -0.518 4.518 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 N -1.097 6.097 14 S 2.613 3.387 15 O -0.970 6.970 16 O -0.928 6.928 17 C -0.565 4.565 18 C -0.025 4.025 19 C -0.216 4.216 20 C -0.009 4.009 21 N -0.361 5.361 22 O 0.106 5.894 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.044 0.956 28 H 0.264 0.736 29 H 0.409 0.591 30 H 0.164 0.836 31 H 0.153 0.847 32 H 0.183 0.817 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 5.037 1.077 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.169 4.169 3 C 0.172 3.828 4 H 0.057 0.943 5 C -0.558 4.558 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 N -0.859 5.859 14 S 2.699 3.301 15 O -0.959 6.959 16 O -0.918 6.918 17 C -0.688 4.688 18 C -0.090 4.090 19 C -0.239 4.239 20 C -0.187 4.187 21 N -0.063 5.063 22 O 0.038 5.962 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.064 0.936 26 H 0.126 0.874 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.201 0.799 33 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -9.001 6.322 1.956 11.172 hybrid contribution 0.970 -0.749 -1.035 1.604 sum -8.031 5.573 0.922 9.818 Atomic orbital electron populations 1.21906 0.99110 0.99965 1.00109 1.21913 0.91835 0.99402 1.03722 1.18620 0.94973 0.90149 0.79019 0.94276 1.21518 0.91020 1.36745 1.06478 0.91585 1.24898 0.98692 0.94923 0.95359 1.69818 1.35273 1.38302 1.10006 0.86496 0.85184 0.78573 0.77258 1.20660 1.21168 1.19623 1.55615 1.81649 1.29852 1.18744 1.05095 0.75841 0.74569 0.74586 1.93559 1.85483 1.84201 1.32700 1.93650 1.45321 1.74834 1.77957 1.29625 1.23157 0.94784 1.21231 1.23234 0.95606 0.96110 0.94012 1.22826 1.05162 0.92055 1.03818 1.25108 0.96257 1.02297 0.95007 1.73885 1.21383 0.93514 1.17563 1.84858 1.45699 1.19264 1.46362 0.94205 0.94231 0.93633 0.87432 0.93747 0.92661 0.75761 0.81800 0.82896 0.79931 0.78651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.84 37.16 0.37 -2.07 16 2 C -0.13 -2.57 5.37 -26.73 -0.14 -2.71 16 3 C 0.28 5.91 2.08 -69.08 -0.14 5.77 16 4 H 0.04 0.85 7.19 -51.93 -0.37 0.48 16 5 C -0.52 -13.20 8.84 -34.44 -0.30 -13.50 16 6 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 8 N -0.89 -23.22 11.29 55.43 0.63 -22.59 16 9 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 N -1.10 -19.83 4.67 -5.88 -0.03 -19.85 16 14 S 2.61 45.92 5.36 -107.50 -0.58 45.34 16 15 O -0.97 -18.74 18.08 -57.54 -1.04 -19.78 16 16 O -0.93 -19.92 17.84 -57.54 -1.03 -20.94 16 17 C -0.56 -7.57 6.45 36.00 0.23 -7.34 16 18 C -0.02 -0.35 6.75 -35.30 -0.24 -0.59 16 19 C -0.22 -2.76 11.09 -39.38 -0.44 -3.19 16 20 C -0.01 -0.10 12.17 -17.06 -0.21 -0.31 16 21 N -0.36 -5.33 12.07 30.35 0.37 -4.96 16 22 O 0.11 1.62 11.20 17.20 0.19 1.82 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.04 0.54 7.60 -51.93 -0.39 0.15 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.11 2.45 5.97 -51.93 -0.31 2.14 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 29 H 0.41 6.59 8.80 -34.46 -0.30 6.29 16 30 H 0.16 1.97 7.55 -51.92 -0.39 1.58 16 31 H 0.15 1.64 8.14 -51.92 -0.42 1.21 16 32 H 0.18 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.20 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 301.16 15.07 4.54 4.54 Total: -1.00 -31.54 301.16 -6.79 -38.33 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -3.85 Total: 4.94 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -0.97 Total: -22.41 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.96 Total: -47.41 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -1.87 Total: -38.91 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 45.92 SS G_CDS: -0.58 Total: 45.34 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.54 -6.79 -38.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654881177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.102 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds