Wall clock time and date at job start Mon Mar 30 2020 01:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46686 * 2 1 4 4 H 1.08994 * 109.47574 * 303.70927 * 3 2 1 5 5 C 1.50700 * 109.47203 * 183.70675 * 3 2 1 6 6 H 1.07995 * 120.00680 * 239.72631 * 5 3 2 7 7 C 1.37879 * 119.99734 * 60.00261 * 5 3 2 8 8 N 1.31515 * 120.00032 * 359.72218 * 7 5 3 9 9 Si 1.86801 * 120.00197 * 179.72758 * 7 5 3 10 10 H 1.48493 * 109.47430 * 89.99484 * 9 7 5 11 11 H 1.48505 * 109.47244 * 210.00072 * 9 7 5 12 12 H 1.48503 * 109.46837 * 329.99705 * 9 7 5 13 13 N 1.46507 * 109.47353 * 63.71018 * 3 2 1 14 14 S 1.65592 * 119.99984 * 215.52148 * 13 3 2 15 15 O 1.42100 * 104.27814 * 180.08378 * 14 13 3 16 16 O 1.42105 * 104.27898 * 307.93947 * 14 13 3 17 17 C 1.81402 * 104.45403 * 64.01149 * 14 13 3 18 18 C 1.50697 * 109.47159 * 174.92764 * 17 14 13 19 19 C 1.35455 * 126.77541 * 89.99925 * 18 17 14 20 20 C 1.41380 * 103.98435 * 179.97438 * 19 18 17 21 21 N 1.30175 * 106.39581 * 0.02562 * 20 19 18 22 22 O 1.20924 * 111.60264 * 359.72489 * 21 20 19 23 23 H 1.09007 * 109.46670 * 184.17105 * 1 2 3 24 24 H 1.08997 * 109.47286 * 304.17186 * 1 2 3 25 25 H 1.08999 * 109.47506 * 64.17561 * 1 2 3 26 26 H 1.08994 * 109.47299 * 240.00328 * 2 1 3 27 27 H 1.08998 * 109.47292 * 119.99635 * 2 1 3 28 28 H 0.97000 * 120.00092 * 180.02562 * 8 7 5 29 29 H 0.96999 * 119.99928 * 35.51517 * 13 3 2 30 30 H 1.09007 * 109.46505 * 294.92518 * 17 14 13 31 31 H 1.09000 * 109.47089 * 54.92744 * 17 14 13 32 32 H 1.08004 * 128.00930 * 359.97438 * 19 18 17 33 33 H 1.07997 * 126.79864 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6233 1.9752 -0.8548 5 6 3.5441 1.4437 -0.0919 6 1 4.1327 1.8980 0.6914 7 6 4.1688 0.8696 -1.1787 8 7 3.4521 0.3162 -2.1326 9 14 6.0331 0.8776 -1.2964 10 1 6.5750 -0.3458 -0.6526 11 1 6.4388 0.9067 -2.7247 12 1 6.5674 2.0787 -0.6055 13 7 1.6259 2.1069 1.2384 14 16 1.2168 3.7114 1.2203 15 8 0.8791 4.0022 2.5697 16 8 2.3191 4.3470 0.5877 17 6 -0.2560 3.7913 0.1643 18 6 -0.8018 5.1959 0.1689 19 6 -0.4709 6.1974 -0.6811 20 6 -1.2588 7.2881 -0.2471 21 7 -1.9508 6.8603 0.7690 22 8 -1.7142 5.6995 1.0117 23 1 -0.3633 -1.0250 0.0748 24 1 -0.3634 0.5772 0.8502 25 1 -0.3634 0.4476 -0.9250 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8916 -0.0880 -2.8970 29 1 1.5913 1.6069 2.0688 30 1 0.0114 3.5087 -0.8540 31 1 -1.0134 3.1059 0.5446 32 1 0.2320 6.1691 -1.5006 33 1 -1.2813 8.2801 -0.6737 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654881177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:59 Heat of formation + Delta-G solvation = -36.634526 kcal Electronic energy + Delta-G solvation = -19697.942906 eV Core-core repulsion = 16467.543875 eV Total energy + Delta-G solvation = -3230.399031 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.07247 -38.19683 -37.66168 -36.95132 -35.26395 -34.40636 -34.11068 -32.14933 -29.34624 -28.45951 -24.81307 -24.60559 -22.78249 -21.85971 -20.44179 -19.06712 -18.87838 -18.38495 -18.22638 -17.24019 -16.98113 -16.49198 -16.06400 -15.55344 -14.93854 -14.77500 -14.59794 -14.38182 -13.78597 -13.52340 -13.31366 -13.16397 -13.03025 -12.98606 -12.67761 -12.57804 -12.54139 -12.45914 -12.05585 -11.62478 -11.59300 -11.50771 -11.35154 -10.52105 -10.39457 -9.92971 -8.07076 -6.17595 -0.88253 0.34151 1.20966 1.43513 1.46957 1.56048 1.63667 2.03807 2.48950 2.78933 3.15426 3.20814 3.33689 3.44801 3.86019 3.95411 4.19737 4.48821 4.52320 4.64212 4.69641 4.75773 4.94081 5.00504 5.20890 5.44534 5.46986 5.74286 5.87116 6.08030 6.33979 6.49037 6.88537 7.04217 7.50533 8.94556 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.024917 B = 0.005777 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.463110 B = 4845.738839 C = 5153.899892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.280 3.720 4 H 0.038 0.962 5 C -0.538 4.538 6 H 0.045 0.955 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.940 3.060 10 H -0.274 1.274 11 H -0.280 1.280 12 H -0.282 1.282 13 N -1.097 6.097 14 S 2.616 3.384 15 O -0.992 6.992 16 O -0.977 6.977 17 C -0.538 4.538 18 C -0.048 4.048 19 C -0.214 4.214 20 C 0.002 3.998 21 N -0.385 5.385 22 O 0.086 5.914 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.416 0.584 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.204 0.796 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.858 5.369 0.413 11.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.174 3.826 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.064 0.936 7 C -0.175 4.175 8 N -0.547 5.547 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.857 5.857 14 S 2.709 3.291 15 O -0.982 6.982 16 O -0.967 6.967 17 C -0.667 4.667 18 C -0.113 4.113 19 C -0.236 4.236 20 C -0.176 4.176 21 N -0.091 5.091 22 O 0.021 5.979 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.251 0.749 30 H 0.201 0.799 31 H 0.204 0.796 32 H 0.221 0.779 33 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -10.271 6.609 1.345 12.287 hybrid contribution 1.333 -0.748 -0.848 1.748 sum -8.938 5.862 0.497 10.700 Atomic orbital electron populations 1.21841 0.95647 1.01528 1.01548 1.21737 0.94949 0.97680 1.02074 1.18416 0.92704 0.91366 0.80070 0.94389 1.21836 0.93563 1.36438 1.05970 0.93646 1.25419 1.01469 0.95095 0.95489 1.69893 1.36016 1.38642 1.10143 0.85842 0.82093 0.78145 0.77270 1.19994 1.20555 1.20747 1.55357 1.82452 1.29686 1.18253 1.04639 0.76408 0.73691 0.74350 1.93527 1.85996 1.84224 1.34499 1.93592 1.48921 1.75628 1.78542 1.29284 1.20718 0.95816 1.20841 1.23436 0.96393 0.96664 0.94794 1.23289 1.04812 0.91745 1.03799 1.25787 0.94511 1.03626 0.93629 1.73884 1.22717 0.93553 1.18923 1.84836 1.46389 1.19652 1.46991 0.92798 0.91944 0.92895 0.90384 0.94123 0.92635 0.74890 0.79901 0.79615 0.77903 0.74848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.84 71.98 0.71 -3.58 16 2 C -0.12 -4.84 5.37 30.59 0.16 -4.67 16 3 C 0.28 11.82 2.08 44.24 0.09 11.91 16 4 H 0.04 1.62 7.19 -2.39 -0.02 1.60 16 5 C -0.54 -27.74 8.84 25.60 0.23 -27.51 16 6 H 0.05 2.46 7.81 -2.91 -0.02 2.44 16 7 C 0.03 1.31 5.30 84.66 0.45 1.76 16 8 N -0.91 -47.02 11.29 21.45 0.24 -46.78 16 9 Si 0.94 42.40 29.54 68.60 2.03 44.42 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 N -1.10 -38.88 4.67 -172.52 -0.80 -39.68 16 14 S 2.62 90.14 5.36 -56.49 -0.30 89.84 16 15 O -0.99 -38.00 18.08 -127.65 -2.31 -40.30 16 16 O -0.98 -42.26 17.84 -127.65 -2.28 -44.54 16 17 C -0.54 -13.05 6.45 71.24 0.46 -12.59 16 18 C -0.05 -1.26 6.75 25.04 0.17 -1.09 16 19 C -0.21 -4.90 11.09 22.40 0.25 -4.65 16 20 C 0.00 0.05 12.17 85.71 1.04 1.09 16 21 N -0.39 -10.66 12.07 -59.27 -0.72 -11.37 16 22 O 0.09 2.50 11.20 71.71 0.80 3.30 16 23 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 24 H 0.06 1.51 7.60 -2.39 -0.02 1.49 16 25 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 3.54 5.97 -2.39 -0.01 3.52 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 29 H 0.42 13.17 8.80 -96.75 -0.85 12.32 16 30 H 0.18 3.83 7.55 -2.39 -0.02 3.81 16 31 H 0.19 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.20 3.67 8.06 -2.91 -0.02 3.64 16 33 H 0.24 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -68.59 301.16 0.51 -68.08 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.28 Total: 16.37 kcal Atomic # 6 Polarization: -42.89 SS G_CDS: 3.56 Total: -39.33 kcal Atomic # 7 Polarization: -96.56 SS G_CDS: -1.28 Total: -97.84 kcal Atomic # 8 Polarization: -77.76 SS G_CDS: -3.78 Total: -81.54 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 90.14 SS G_CDS: -0.30 Total: 89.84 kcal Total: -68.59 0.51 -68.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654881177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.449 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds