Wall clock time and date at job start Mon Mar 30 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 13 13 C 1.46901 * 110.99865 * 274.99915 * 12 2 1 14 14 C 1.50697 * 109.47446 * 179.97438 * 13 12 2 15 15 C 1.34518 * 125.78747 * 89.99653 * 14 13 12 16 16 C 1.41384 * 106.83960 * 180.02562 * 15 14 13 17 17 C 1.34510 * 106.83897 * 0.02562 * 16 15 14 18 18 S 1.76206 * 125.78622 * 180.02562 * 17 16 15 19 19 N 1.65598 * 107.21939 * 90.00160 * 18 17 16 20 20 O 1.42101 * 106.40021 * 203.54229 * 18 17 16 21 21 O 1.42099 * 106.40255 * 336.45725 * 18 17 16 22 22 O 1.34298 * 108.42434 * 359.73865 * 17 16 15 23 23 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 24 24 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 25 25 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.00897 * 110.99993 * 151.04686 * 12 2 1 28 28 H 1.09000 * 109.47455 * 300.00163 * 13 12 2 29 29 H 1.09005 * 109.47362 * 59.99728 * 13 12 2 30 30 H 1.08003 * 126.58023 * 0.04465 * 15 14 13 31 31 H 1.07999 * 126.57539 * 179.97438 * 16 15 14 32 32 H 0.97002 * 119.99756 * 0.02562 * 19 18 17 33 33 H 0.96997 * 119.99737 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5875 -0.5219 3.5560 15 6 3.8761 -0.6473 3.9211 16 6 3.8930 -1.4190 5.1056 17 6 2.6138 -1.7195 5.3931 18 16 2.0630 -2.6677 6.7724 19 7 1.7931 -1.6102 8.0179 20 8 0.7943 -3.1978 6.4140 21 8 3.1613 -3.4791 7.1658 22 8 1.8271 -1.1690 4.4541 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9026 -0.5282 -4.4376 27 1 2.9174 -1.1205 1.0286 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5526 30 1 4.7333 -0.2369 3.4080 31 1 4.7656 -1.7118 5.6705 32 1 1.9461 -0.6609 7.8898 33 1 1.4813 -1.9400 8.8751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:41 Heat of formation + Delta-G solvation = -48.170782 kcal Electronic energy + Delta-G solvation = -18790.903224 eV Core-core repulsion = 15560.003943 eV Total energy + Delta-G solvation = -3230.899281 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.75668 -37.41551 -36.52312 -36.11434 -33.54759 -33.40212 -32.83134 -31.14297 -28.80835 -25.67984 -24.59207 -22.31593 -21.09458 -20.09154 -19.84158 -18.90354 -17.78961 -17.15919 -16.50465 -16.21896 -15.84037 -15.76734 -14.76166 -14.18009 -13.98873 -13.88069 -13.28122 -13.08055 -12.86877 -12.50987 -12.36345 -12.26473 -12.24579 -12.00166 -11.67042 -11.20998 -11.02882 -10.84993 -10.76147 -10.26524 -10.20569 -9.63602 -9.20686 -9.03960 -8.70431 -7.79421 -6.18396 -4.19927 -0.00589 0.96932 2.22089 2.60565 3.03304 3.20958 3.28541 3.32166 3.34070 4.29941 4.45077 4.63216 4.69735 5.01160 5.15582 5.29458 5.36326 5.51070 5.58220 5.62960 5.73825 6.16594 6.26530 6.41323 6.56169 6.64988 6.66758 6.76684 7.24653 7.40876 7.69704 8.09133 8.46069 8.84907 9.42024 10.94326 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.041194 B = 0.003663 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.554497 B = 7641.227725 C = 7751.991850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.184 3.816 3 H 0.006 0.994 4 C -0.525 4.525 5 H 0.080 0.920 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.673 5.673 13 C 0.120 3.880 14 C 0.078 3.922 15 C -0.237 4.237 16 C -0.072 4.072 17 C -0.599 4.599 18 S 2.742 3.258 19 N -1.249 6.249 20 O -0.946 6.946 21 O -0.948 6.948 22 O -0.111 6.111 23 H 0.027 0.973 24 H 0.040 0.960 25 H 0.061 0.939 26 H 0.266 0.734 27 H 0.346 0.654 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.418 0.582 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 3.569 22.272 22.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.076 3.924 3 H 0.023 0.977 4 C -0.563 4.563 5 H 0.098 0.902 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.194 1.194 11 H -0.224 1.224 12 N -0.306 5.306 13 C -0.009 4.009 14 C 0.021 3.979 15 C -0.258 4.258 16 C -0.093 4.093 17 C -0.730 4.730 18 S 2.824 3.176 19 N -0.925 5.925 20 O -0.935 6.935 21 O -0.937 6.937 22 O -0.005 6.005 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.165 0.835 28 H 0.084 0.916 29 H 0.109 0.891 30 H 0.178 0.822 31 H 0.184 0.816 32 H 0.245 0.755 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 0.793 2.250 22.056 22.185 hybrid contribution 0.633 2.184 -0.573 2.345 sum 1.426 4.434 21.483 21.982 Atomic orbital electron populations 1.22108 0.98325 1.01461 0.97953 1.19586 0.92049 0.93039 0.87731 0.97688 1.21038 1.32819 1.14028 0.88419 0.90203 1.24924 0.95589 0.96770 0.95663 1.69885 1.45174 1.40129 0.98005 0.86790 0.80777 0.83353 0.76851 1.20339 1.19390 1.22411 1.60585 1.33637 1.31816 1.04577 1.20675 1.01908 0.92675 0.85683 1.23448 0.90030 0.92857 0.91526 1.21887 0.97483 1.06884 0.99500 1.21971 0.96163 0.94607 0.96586 1.35001 0.99253 1.23897 1.14866 1.00823 0.73818 0.71409 0.71541 1.53042 1.87426 1.22619 1.29394 1.93630 1.41704 1.75695 1.82504 1.93652 1.55728 1.63318 1.80990 1.84211 1.35096 1.51937 1.29207 0.95411 0.94175 0.92024 0.92407 0.83486 0.91647 0.89127 0.82154 0.81610 0.75475 0.74731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.90 37.16 0.33 -2.73 16 2 C 0.18 4.17 2.19 -68.86 -0.15 4.02 16 3 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 4 C -0.53 -14.28 9.17 -34.44 -0.32 -14.60 16 5 H 0.08 2.36 7.86 -52.49 -0.41 1.94 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 8 Si 0.89 21.35 24.37 -169.99 -4.14 17.21 16 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 16 10 H -0.27 -6.09 6.53 56.52 0.37 -5.72 16 11 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 12 N -0.67 -13.23 6.29 -109.22 -0.69 -13.92 16 13 C 0.12 1.86 6.01 -4.98 -0.03 1.83 16 14 C 0.08 1.14 6.83 -35.62 -0.24 0.89 16 15 C -0.24 -2.99 10.81 -39.70 -0.43 -3.42 16 16 C -0.07 -0.83 10.63 -39.70 -0.42 -1.25 16 17 C -0.60 -7.49 7.33 29.41 0.22 -7.27 16 18 S 2.74 28.56 6.43 -107.50 -0.69 27.87 16 19 N -1.25 -7.04 9.55 60.35 0.58 -6.46 16 20 O -0.95 -13.83 18.02 -57.21 -1.03 -14.86 16 21 O -0.95 -11.86 17.83 -57.17 -1.02 -12.88 16 22 O -0.11 -1.70 10.65 5.73 0.06 -1.64 16 23 H 0.03 0.51 7.45 -51.93 -0.39 0.13 16 24 H 0.04 0.90 3.27 -51.93 -0.17 0.73 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 27 H 0.35 6.77 8.22 -39.29 -0.32 6.45 16 28 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 29 H 0.09 1.36 7.44 -51.93 -0.39 0.97 16 30 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 31 H 0.17 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.42 1.50 8.92 -34.47 -0.31 1.19 16 33 H 0.42 1.50 8.96 -34.47 -0.31 1.19 16 LS Contribution 294.53 15.07 4.44 4.44 Total: -1.00 -35.72 294.53 -6.38 -42.11 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -3.52 Total: 4.65 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: -1.14 Total: -20.55 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.66 Total: -46.35 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.99 Total: -29.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.14 Total: 17.21 kcal Atomic # 16 Polarization: 28.56 SS G_CDS: -0.69 Total: 27.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.72 -6.38 -42.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.062 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds