Wall clock time and date at job start Mon Mar 30 2020 01:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 C 1.50706 * 109.47430 * 240.00158 * 2 1 3 5 5 H 1.07999 * 120.00193 * 240.00552 * 4 2 1 6 6 C 1.37879 * 119.99398 * 59.99633 * 4 2 1 7 7 N 1.31514 * 119.99350 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 0.02562 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 N 1.46902 * 109.47489 * 120.00408 * 2 1 3 13 13 C 1.46901 * 110.99865 * 274.99915 * 12 2 1 14 14 C 1.50697 * 109.47446 * 179.97438 * 13 12 2 15 15 C 1.34518 * 125.78747 * 89.99653 * 14 13 12 16 16 C 1.41384 * 106.83960 * 180.02562 * 15 14 13 17 17 C 1.34510 * 106.83897 * 0.02562 * 16 15 14 18 18 S 1.76206 * 125.78622 * 180.02562 * 17 16 15 19 19 N 1.65598 * 107.21939 * 90.00160 * 18 17 16 20 20 O 1.42101 * 106.40021 * 203.54229 * 18 17 16 21 21 O 1.42099 * 106.40255 * 336.45725 * 18 17 16 22 22 O 1.34298 * 108.42434 * 359.73865 * 17 16 15 23 23 H 1.09002 * 109.47045 * 299.99907 * 1 2 3 24 24 H 1.09001 * 109.46922 * 59.99700 * 1 2 3 25 25 H 1.09000 * 109.47140 * 180.02562 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.00897 * 110.99993 * 151.04686 * 12 2 1 28 28 H 1.09000 * 109.47455 * 300.00163 * 13 12 2 29 29 H 1.09005 * 109.47362 * 59.99728 * 13 12 2 30 30 H 1.08003 * 126.58023 * 0.04465 * 15 14 13 31 31 H 1.07999 * 126.57539 * 179.97438 * 16 15 14 32 32 H 0.97002 * 119.99756 * 0.02562 * 19 18 17 33 33 H 0.96997 * 119.99737 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2392 -2.4827 7 7 2.1373 -0.8595 -3.5565 8 14 0.6258 1.2799 -2.6541 9 1 -0.8021 0.8745 -2.6992 10 1 0.8491 2.1773 -1.4922 11 1 0.9771 1.9954 -3.9070 12 7 2.0197 -0.6926 1.1994 13 6 2.0826 0.2225 2.3469 14 6 2.5875 -0.5219 3.5560 15 6 3.8761 -0.6473 3.9211 16 6 3.8930 -1.4190 5.1056 17 6 2.6138 -1.7195 5.3931 18 16 2.0630 -2.6677 6.7724 19 7 1.7931 -1.6102 8.0179 20 8 0.7943 -3.1978 6.4140 21 8 3.1613 -3.4791 7.1658 22 8 1.8271 -1.1690 4.4541 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.9026 -0.5282 -4.4376 27 1 2.9174 -1.1205 1.0286 28 1 2.7589 1.0461 2.1182 29 1 1.0871 0.6162 2.5526 30 1 4.7333 -0.2369 3.4080 31 1 4.7656 -1.7118 5.6705 32 1 1.9461 -0.6609 7.8898 33 1 1.4813 -1.9400 8.8751 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001658517522.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:40 Heat of formation + Delta-G solvation = -80.721984 kcal Electronic energy + Delta-G solvation = -18792.314750 eV Core-core repulsion = 15560.003943 eV Total energy + Delta-G solvation = -3232.310807 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.77597 -38.37905 -38.11897 -37.09018 -34.88537 -34.23629 -34.11707 -32.72138 -30.18203 -27.38014 -26.16740 -23.28414 -22.22030 -21.81112 -20.70235 -19.77166 -18.97545 -18.57606 -17.68635 -17.29860 -17.06675 -16.74519 -16.16800 -15.74437 -15.51058 -14.89241 -14.76777 -14.51250 -14.05916 -14.00575 -13.50587 -13.40331 -13.32230 -13.24662 -12.90351 -12.75790 -12.63090 -12.49932 -12.08896 -11.46270 -11.42345 -11.23043 -11.14254 -10.79977 -10.13930 -9.31534 -8.32875 -6.39099 -0.85153 -0.03071 1.23663 1.33238 1.35831 1.47220 1.68692 2.15279 2.30228 2.54288 3.02459 3.35100 3.60992 3.76632 3.78742 4.22806 4.33494 4.42722 4.50016 4.66425 4.68554 4.69737 4.81542 4.96199 5.23262 5.24107 5.44410 5.57686 5.75242 5.88410 6.30658 6.38293 6.52906 6.72903 7.27413 8.83575 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.041194 B = 0.003663 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.554497 B = 7641.227725 C = 7751.991850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.189 3.811 3 H 0.015 0.985 4 C -0.529 4.529 5 H 0.038 0.962 6 C 0.015 3.985 7 N -0.946 5.946 8 Si 0.955 3.045 9 H -0.269 1.269 10 H -0.242 1.242 11 H -0.298 1.298 12 N -0.686 5.686 13 C 0.122 3.878 14 C 0.049 3.951 15 C -0.229 4.229 16 C -0.070 4.070 17 C -0.604 4.604 18 S 2.772 3.228 19 N -1.226 6.226 20 O -0.990 6.990 21 O -0.968 6.968 22 O -0.135 6.135 23 H 0.061 0.939 24 H 0.036 0.964 25 H 0.046 0.954 26 H 0.267 0.733 27 H 0.342 0.658 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.181 0.819 31 H 0.196 0.804 32 H 0.431 0.569 33 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.677 5.482 24.448 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.080 3.920 3 H 0.032 0.968 4 C -0.568 4.568 5 H 0.056 0.944 6 C -0.184 4.184 7 N -0.586 5.586 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.165 1.165 11 H -0.226 1.226 12 N -0.318 5.318 13 C -0.006 4.006 14 C -0.006 4.006 15 C -0.249 4.249 16 C -0.091 4.091 17 C -0.734 4.734 18 S 2.853 3.147 19 N -0.910 5.910 20 O -0.979 6.979 21 O -0.957 6.957 22 O -0.029 6.029 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.198 0.802 31 H 0.214 0.786 32 H 0.262 0.738 33 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 0.656 4.180 24.272 24.638 hybrid contribution 0.771 1.501 -1.125 2.028 sum 1.428 5.681 23.147 23.877 Atomic orbital electron populations 1.22047 0.97291 1.01037 0.99348 1.19413 0.92791 0.92813 0.87000 0.96787 1.21356 1.31821 1.12855 0.90735 0.94356 1.25831 0.97119 1.00215 0.95193 1.70042 1.47353 1.42460 0.98712 0.85764 0.78911 0.79624 0.77566 1.19495 1.16521 1.22597 1.60478 1.33635 1.32998 1.04714 1.20681 1.03074 0.92484 0.84411 1.23366 0.90785 0.94504 0.91946 1.22223 0.97299 1.05942 0.99479 1.22387 0.96755 0.93700 0.96273 1.35318 0.99683 1.23505 1.14908 0.99777 0.72523 0.71114 0.71278 1.52544 1.87039 1.22777 1.28598 1.93583 1.43724 1.77213 1.83428 1.93626 1.56220 1.64673 1.81157 1.84171 1.36132 1.52651 1.29979 0.92035 0.94601 0.93493 0.92360 0.83954 0.89551 0.88463 0.80176 0.78638 0.73835 0.73084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.90 71.98 0.64 -5.13 16 2 C 0.19 8.33 2.19 44.17 0.10 8.42 16 3 H 0.01 0.62 6.86 -2.39 -0.02 0.60 16 4 C -0.53 -29.32 9.17 25.60 0.23 -29.08 16 5 H 0.04 2.37 7.86 -2.91 -0.02 2.35 16 6 C 0.01 0.82 5.45 84.66 0.46 1.28 16 7 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 8 Si 0.95 43.29 24.37 68.60 1.67 44.96 16 9 H -0.27 -11.78 6.87 99.48 0.68 -11.10 16 10 H -0.24 -9.83 6.53 99.48 0.65 -9.18 16 11 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 12 N -0.69 -26.44 6.29 -499.45 -3.14 -29.58 16 13 C 0.12 3.55 6.01 85.56 0.51 4.06 16 14 C 0.05 1.36 6.83 24.83 0.17 1.53 16 15 C -0.23 -5.25 10.81 22.19 0.24 -5.01 16 16 C -0.07 -1.45 10.63 22.19 0.24 -1.21 16 17 C -0.60 -14.12 7.33 66.97 0.49 -13.63 16 18 S 2.77 53.92 6.43 -56.49 -0.36 53.56 16 19 N -1.23 -10.92 9.55 37.02 0.35 -10.57 16 20 O -0.99 -28.49 18.02 -127.96 -2.31 -30.79 16 21 O -0.97 -22.67 17.83 -128.00 -2.28 -24.95 16 22 O -0.14 -3.96 10.65 -2.42 -0.03 -3.98 16 23 H 0.06 2.11 7.45 -2.39 -0.02 2.09 16 24 H 0.04 1.50 3.27 -2.39 -0.01 1.49 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 27 H 0.34 13.47 8.22 -89.70 -0.74 12.73 16 28 H 0.09 2.15 8.06 -2.39 -0.02 2.13 16 29 H 0.10 2.67 7.44 -2.38 -0.02 2.65 16 30 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 31 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 32 H 0.43 1.88 8.92 -96.75 -0.86 1.02 16 33 H 0.43 2.00 8.96 -96.75 -0.87 1.13 16 Total: -1.00 -78.21 294.53 -4.08 -82.29 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -1.37 Total: 15.69 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.08 Total: -38.76 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -2.49 Total: -98.01 kcal Atomic # 8 Polarization: -55.11 SS G_CDS: -4.61 Total: -59.73 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 1.67 Total: 44.96 kcal Atomic # 16 Polarization: 53.92 SS G_CDS: -0.36 Total: 53.56 kcal Total: -78.21 -4.08 -82.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517522.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.565 kcal (2) G-P(sol) polarization free energy of solvation -78.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds