Wall clock time and date at job start Mon Mar 30 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47513 * 2 1 4 4 C 1.50700 * 109.47107 * 119.99544 * 2 1 3 5 5 H 1.08004 * 119.99979 * 119.99581 * 4 2 1 6 6 C 1.37879 * 120.00157 * 300.00031 * 4 2 1 7 7 N 1.31516 * 120.00180 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99740 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47228 * 90.00097 * 8 6 4 10 10 H 1.48496 * 109.46980 * 210.00278 * 8 6 4 11 11 H 1.48495 * 109.47075 * 330.00269 * 8 6 4 12 12 N 1.46907 * 109.47191 * 239.99499 * 2 1 3 13 13 C 1.46893 * 110.99943 * 85.00292 * 12 2 1 14 14 C 1.50702 * 109.47026 * 180.02562 * 13 12 2 15 15 C 1.34512 * 125.78762 * 89.99647 * 14 13 12 16 16 C 1.41385 * 106.83926 * 179.76997 * 15 14 13 17 17 C 1.34515 * 106.83992 * 0.23220 * 16 15 14 18 18 S 1.76195 * 125.79092 * 180.02562 * 17 16 15 19 19 N 1.65597 * 107.22201 * 89.99673 * 18 17 16 20 20 O 1.42104 * 106.40595 * 203.53931 * 18 17 16 21 21 O 1.42098 * 106.40334 * 336.45505 * 18 17 16 22 22 O 1.34305 * 125.78789 * 270.15859 * 14 13 12 23 23 H 1.08999 * 109.47436 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47330 * 300.00369 * 1 2 3 25 25 H 1.09004 * 109.47066 * 60.00299 * 1 2 3 26 26 H 0.97001 * 119.99881 * 180.02562 * 7 6 4 27 27 H 1.00903 * 110.99823 * 208.95900 * 12 2 1 28 28 H 1.08999 * 109.47043 * 59.99943 * 13 12 2 29 29 H 1.09008 * 109.46957 * 300.00106 * 13 12 2 30 30 H 1.08002 * 126.58498 * 0.04167 * 15 14 13 31 31 H 1.08001 * 126.58081 * 180.18948 * 16 15 14 32 32 H 0.96998 * 119.99834 * 359.97438 * 19 18 17 33 33 H 0.97001 * 120.00494 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5567 8 14 0.6258 1.2800 2.6540 9 1 -0.8021 0.8748 2.6992 10 1 0.9772 1.9957 3.9068 11 1 0.8491 2.1774 1.4921 12 7 2.0196 -0.6926 -1.1994 13 6 2.0825 0.2223 -2.3469 14 6 2.5874 -0.5222 -3.5560 15 6 1.8259 -1.1740 -4.4530 16 6 2.7048 -1.7194 -5.4169 17 6 3.9511 -1.3725 -5.0484 18 16 5.4332 -1.7938 -5.9030 19 7 5.7294 -0.5854 -6.9958 20 8 6.4803 -1.7334 -4.9443 21 8 5.1412 -2.9589 -6.6624 22 8 3.8741 -0.6500 -3.9189 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.9033 -0.5275 4.4376 27 1 2.9173 -1.1207 -1.0286 28 1 2.7589 1.0459 -2.1182 29 1 1.0870 0.6161 -2.5525 30 1 0.7494 -1.2602 -4.4418 31 1 2.4285 -2.3031 -6.2826 32 1 5.1228 0.1686 -7.0613 33 1 6.5096 -0.6316 -7.5704 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658517523.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:43 Heat of formation + Delta-G solvation = -48.264349 kcal Electronic energy + Delta-G solvation = -18790.569325 eV Core-core repulsion = 15559.665987 eV Total energy + Delta-G solvation = -3230.903338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.76192 -37.41656 -36.50356 -36.11586 -33.54677 -33.38013 -32.84320 -31.13500 -28.83655 -25.66335 -24.58434 -22.28873 -21.11690 -20.08743 -19.84248 -18.90657 -17.79108 -17.10889 -16.49093 -16.22906 -15.85592 -15.62610 -15.14339 -14.09547 -13.97115 -13.86506 -13.22160 -13.06356 -12.55594 -12.49806 -12.35856 -12.31266 -12.24754 -12.20532 -11.65599 -11.26586 -11.04623 -10.84875 -10.77098 -10.25923 -10.20506 -9.63648 -9.20114 -9.01552 -8.69465 -7.80071 -6.16990 -4.18537 -0.00825 0.96306 2.25666 2.59669 3.02683 3.20429 3.28550 3.32545 3.33987 4.30536 4.46213 4.65211 4.71330 4.98866 5.16061 5.32002 5.40309 5.50894 5.62858 5.64106 5.74501 6.20369 6.22215 6.38554 6.53741 6.64462 6.65113 6.77288 7.23047 7.40718 7.69352 8.08094 8.47151 8.86792 9.43111 10.95805 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.037257 B = 0.003766 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.348069 B = 7433.684559 C = 7764.080181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.183 3.817 3 H 0.006 0.994 4 C -0.525 4.525 5 H 0.080 0.920 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.892 3.108 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.123 3.877 14 C 0.069 3.931 15 C -0.221 4.221 16 C -0.073 4.073 17 C -0.599 4.599 18 S 2.741 3.259 19 N -1.249 6.249 20 O -0.946 6.946 21 O -0.947 6.947 22 O -0.120 6.120 23 H 0.060 0.940 24 H 0.040 0.960 25 H 0.026 0.974 26 H 0.266 0.734 27 H 0.348 0.652 28 H 0.050 0.950 29 H 0.104 0.896 30 H 0.162 0.838 31 H 0.166 0.834 32 H 0.418 0.582 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 3.652 -22.189 22.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.075 3.925 3 H 0.023 0.977 4 C -0.563 4.563 5 H 0.098 0.902 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.722 3.278 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.306 5.306 13 C -0.006 4.006 14 C 0.014 3.986 15 C -0.241 4.241 16 C -0.094 4.094 17 C -0.730 4.730 18 S 2.824 3.176 19 N -0.925 5.925 20 O -0.936 6.936 21 O -0.937 6.937 22 O -0.014 6.014 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.167 0.833 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.179 0.821 31 H 0.184 0.816 32 H 0.245 0.755 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 2.250 2.621 -21.682 21.955 hybrid contribution -0.703 1.848 0.235 1.991 sum 1.547 4.468 -21.447 21.962 Atomic orbital electron populations 1.22099 0.98352 1.01322 0.97930 1.19596 0.91968 0.93142 0.87827 0.97651 1.21044 1.32787 1.14069 0.88419 0.90173 1.24927 0.95634 0.96733 0.95665 1.69885 1.45119 1.40153 0.97998 0.86792 0.80652 0.83414 0.76916 1.20398 1.22376 1.19390 1.60675 1.33732 1.31568 1.04617 1.20694 1.00440 0.93086 0.86365 1.23472 0.80932 0.97235 0.96997 1.21822 1.01628 1.04000 0.96644 1.22012 0.90971 0.96690 0.99772 1.34976 1.19854 1.16554 1.01638 1.00824 0.71530 0.72404 0.72842 1.53040 1.39527 1.41506 1.58402 1.93632 1.52964 1.85644 1.61328 1.93652 1.84466 1.45173 1.70386 1.84191 1.28249 1.55452 1.33503 0.92090 0.94166 0.95506 0.92410 0.83349 0.93243 0.87848 0.82061 0.81612 0.75475 0.74721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.89 37.15 0.33 -2.60 16 2 C 0.18 4.14 2.19 -68.86 -0.15 3.99 16 3 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 4 C -0.53 -14.41 9.17 -34.44 -0.32 -14.72 16 5 H 0.08 2.40 7.86 -52.48 -0.41 1.98 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.89 21.37 24.37 -169.99 -4.14 17.23 16 9 H -0.28 -6.47 6.87 56.52 0.39 -6.08 16 10 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.11 6.53 56.52 0.37 -5.74 16 12 N -0.67 -13.22 6.29 -109.22 -0.69 -13.91 16 13 C 0.12 1.92 6.01 -4.98 -0.03 1.89 16 14 C 0.07 1.02 6.83 -35.62 -0.24 0.77 16 15 C -0.22 -2.82 10.81 -39.70 -0.43 -3.25 16 16 C -0.07 -0.84 10.63 -39.70 -0.42 -1.27 16 17 C -0.60 -7.47 7.33 29.42 0.22 -7.25 16 18 S 2.74 28.62 6.43 -107.50 -0.69 27.93 16 19 N -1.25 -7.12 9.55 60.35 0.58 -6.54 16 20 O -0.95 -13.87 18.02 -57.22 -1.03 -14.90 16 21 O -0.95 -11.87 17.83 -57.17 -1.02 -12.88 16 22 O -0.12 -1.81 10.65 5.70 0.06 -1.75 16 23 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.04 0.88 3.27 -51.93 -0.17 0.71 16 25 H 0.03 0.47 7.45 -51.93 -0.39 0.08 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.35 7.13 8.22 -39.29 -0.32 6.81 16 28 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 29 H 0.10 1.42 7.44 -51.92 -0.39 1.03 16 30 H 0.16 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 32 H 0.42 1.52 8.92 -34.46 -0.31 1.22 16 33 H 0.42 1.54 8.96 -34.47 -0.31 1.23 16 LS Contribution 294.53 15.07 4.44 4.44 Total: -1.00 -35.62 294.53 -6.38 -42.00 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -3.52 Total: 4.99 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.14 Total: -20.46 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 0.66 Total: -46.59 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -1.99 Total: -29.54 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.14 Total: 17.23 kcal Atomic # 16 Polarization: 28.62 SS G_CDS: -0.69 Total: 27.93 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -35.62 -6.38 -42.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658517523.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.259 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds