Wall clock time and date at job start Mon Mar 30 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42098 * 104.28223 * 206.07246 * 14 12 2 16 16 O 1.42104 * 104.27294 * 333.93256 * 14 12 2 17 17 C 1.81406 * 104.44650 * 89.99795 * 14 12 2 18 18 C 1.50701 * 109.46901 * 180.02562 * 17 14 12 19 19 C 1.35445 * 126.77625 * 90.00249 * 18 17 14 20 20 C 1.41377 * 103.98911 * 179.97438 * 19 18 17 21 21 N 1.30183 * 106.39420 * 0.02562 * 20 19 18 22 22 O 1.20921 * 111.59938 * 359.71841 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 28 28 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 29 29 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 30 30 H 1.08997 * 109.47575 * 300.00676 * 17 14 12 31 31 H 1.09000 * 109.46644 * 60.00365 * 17 14 12 32 32 H 1.08003 * 128.00742 * 359.97438 * 19 18 17 33 33 H 1.07997 * 126.80526 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7316 -0.9105 2.9105 16 8 3.6005 1.1303 1.5182 17 6 1.7963 0.8414 3.4625 18 6 2.5516 1.6095 4.5163 19 6 2.9003 2.9176 4.4726 20 6 3.5822 3.1305 5.6926 21 7 3.5787 1.9895 6.3195 22 8 3.0065 1.1344 5.6842 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 2.4157 -2.7377 0.9718 28 1 1.6238 -2.2851 2.5002 29 1 0.6904 -2.3002 0.9847 30 1 1.1232 1.5163 2.9338 31 1 1.2175 0.0480 3.9355 32 1 2.7030 3.6325 3.6875 33 1 4.0201 4.0560 6.0361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660086608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:47 Heat of formation + Delta-G solvation = 1.343106 kcal Electronic energy + Delta-G solvation = -19743.567213 eV Core-core repulsion = 16514.815016 eV Total energy + Delta-G solvation = -3228.752197 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.08834 -36.73801 -36.31142 -35.47292 -34.27410 -33.38272 -32.65165 -29.18500 -28.28788 -25.69520 -25.19340 -23.64784 -21.80015 -20.77675 -18.49339 -17.83914 -17.65404 -16.92260 -16.56121 -15.86213 -15.57989 -15.13056 -14.68220 -13.94210 -13.62380 -13.51560 -13.22729 -12.92423 -12.72145 -12.09251 -11.86293 -11.65119 -11.52291 -11.43182 -11.32137 -11.26955 -11.02432 -10.83369 -10.62891 -10.52429 -10.36095 -10.05848 -9.43809 -9.31198 -8.50288 -8.05410 -6.12108 -4.18237 0.39963 1.36864 2.12812 2.69245 3.24016 3.26678 3.34083 3.39389 4.06640 4.19695 4.29831 4.37916 4.48536 4.89291 4.94275 5.16554 5.19822 5.43070 5.48097 5.50821 5.85891 6.06590 6.28767 6.53720 6.63941 6.70181 6.89350 7.31611 7.54843 7.71726 7.97015 8.03248 8.20667 8.83959 9.47728 10.93762 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.005209 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.716454 B = 5373.752937 C = 5532.195170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.263 3.737 3 H 0.063 0.937 4 C -0.517 4.517 5 H 0.064 0.936 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.976 5.976 13 C 0.105 3.895 14 S 2.604 3.396 15 O -0.956 6.956 16 O -0.933 6.933 17 C -0.567 4.567 18 C -0.027 4.027 19 C -0.214 4.214 20 C -0.008 4.008 21 N -0.361 5.361 22 O 0.105 5.895 23 H 0.037 0.963 24 H 0.096 0.904 25 H 0.010 0.990 26 H 0.264 0.736 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.161 0.839 31 H 0.151 0.849 32 H 0.183 0.817 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 1.989 11.471 11.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.160 3.840 3 H 0.081 0.919 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.817 5.817 13 C -0.041 4.041 14 S 2.692 3.308 15 O -0.946 6.946 16 O -0.923 6.923 17 C -0.690 4.690 18 C -0.092 4.092 19 C -0.237 4.237 20 C -0.186 4.186 21 N -0.063 5.063 22 O 0.037 5.963 23 H 0.056 0.944 24 H 0.114 0.886 25 H 0.029 0.971 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.169 0.831 32 H 0.200 0.800 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.328 1.753 12.539 12.665 hybrid contribution -0.759 0.274 -1.298 1.529 sum -1.086 2.027 11.240 11.473 Atomic orbital electron populations 1.22194 0.98223 1.00062 1.00782 1.18863 0.91218 0.93374 0.80542 0.91931 1.21289 1.31593 1.13018 0.89769 0.91798 1.24898 0.94944 0.94997 0.99014 1.69838 1.36589 1.22714 1.23883 0.86476 0.79341 0.79282 0.82218 1.20635 1.21119 1.19786 1.57516 1.70628 1.19464 1.34104 1.21246 1.02005 0.81762 0.99109 1.05470 0.75826 0.74949 0.74554 1.93561 1.66812 1.55713 1.78537 1.93618 1.71753 1.60711 1.66227 1.29739 1.17154 1.11946 1.10163 1.23254 1.01881 0.94319 0.89758 1.22806 1.04098 0.95951 1.00826 1.25119 1.01970 0.98267 0.93266 1.73890 1.13683 0.99667 1.19059 1.84860 1.52767 1.34549 1.24108 0.94442 0.88594 0.97091 0.92643 0.92727 0.92966 0.90703 0.82088 0.83125 0.79960 0.78607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.95 37.16 0.33 -2.84 16 2 C 0.26 5.99 2.57 -69.09 -0.18 5.81 16 3 H 0.06 1.55 6.87 -51.93 -0.36 1.20 16 4 C -0.52 -13.39 8.37 -34.44 -0.29 -13.67 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -23.86 11.32 55.43 0.63 -23.23 16 8 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 12 N -0.98 -18.66 2.99 -115.85 -0.35 -19.00 16 13 C 0.10 1.71 9.44 59.85 0.56 2.28 16 14 S 2.60 46.78 5.35 -107.50 -0.57 46.20 16 15 O -0.96 -18.97 17.09 -57.54 -0.98 -19.95 16 16 O -0.93 -20.10 16.57 -57.54 -0.95 -21.05 16 17 C -0.57 -7.28 6.74 36.01 0.24 -7.04 16 18 C -0.03 -0.38 6.75 -35.30 -0.24 -0.62 16 19 C -0.21 -2.66 11.09 -39.39 -0.44 -3.10 16 20 C -0.01 -0.10 12.17 -17.06 -0.21 -0.30 16 21 N -0.36 -5.23 12.07 30.35 0.37 -4.86 16 22 O 0.11 1.58 11.20 17.18 0.19 1.77 16 23 H 0.04 0.73 6.66 -51.93 -0.35 0.38 16 24 H 0.10 2.25 6.07 -51.93 -0.32 1.93 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 26 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.07 1.16 6.43 -51.93 -0.33 0.82 16 30 H 0.16 1.74 8.14 -51.93 -0.42 1.32 16 31 H 0.15 1.51 8.14 -51.92 -0.42 1.09 16 32 H 0.18 1.83 8.06 -52.48 -0.42 1.41 16 33 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 297.29 15.07 4.48 4.48 Total: -1.00 -32.09 297.29 -6.34 -38.44 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -3.83 Total: -0.47 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -0.30 Total: -17.90 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.65 Total: -47.10 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -1.74 Total: -39.23 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 46.78 SS G_CDS: -0.57 Total: 46.20 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -32.09 -6.34 -38.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660086608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.783 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds