Wall clock time and date at job start Mon Mar 30 2020 01:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.46509 * 119.99920 * 60.00125 * 12 2 1 14 14 S 1.65602 * 120.00679 * 239.99966 * 12 2 1 15 15 O 1.42098 * 104.28223 * 206.07246 * 14 12 2 16 16 O 1.42104 * 104.27294 * 333.93256 * 14 12 2 17 17 C 1.81406 * 104.44650 * 89.99795 * 14 12 2 18 18 C 1.50701 * 109.46901 * 180.02562 * 17 14 12 19 19 C 1.35445 * 126.77625 * 90.00249 * 18 17 14 20 20 C 1.41377 * 103.98911 * 179.97438 * 19 18 17 21 21 N 1.30183 * 106.39420 * 0.02562 * 20 19 18 22 22 O 1.20921 * 111.59938 * 359.71841 * 21 20 19 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 27 27 H 1.09003 * 109.46975 * 89.99812 * 13 12 2 28 28 H 1.08995 * 109.47277 * 209.99863 * 13 12 2 29 29 H 1.09003 * 109.46743 * 330.00349 * 13 12 2 30 30 H 1.08997 * 109.47575 * 300.00676 * 17 14 12 31 31 H 1.09000 * 109.46644 * 60.00365 * 17 14 12 32 32 H 1.08003 * 128.00742 * 359.97438 * 19 18 17 33 33 H 1.07997 * 126.80526 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0183 -0.6905 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9704 0.1142 2.2863 15 8 3.7316 -0.9105 2.9105 16 8 3.6005 1.1303 1.5182 17 6 1.7963 0.8414 3.4625 18 6 2.5516 1.6095 4.5163 19 6 2.9003 2.9176 4.4726 20 6 3.5822 3.1305 5.6926 21 7 3.5787 1.9895 6.3195 22 8 3.0065 1.1344 5.6842 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 0.7089 1.1612 -3.4844 27 1 2.4157 -2.7377 0.9718 28 1 1.6238 -2.2851 2.5002 29 1 0.6904 -2.3002 0.9847 30 1 1.1232 1.5163 2.9338 31 1 1.2175 0.0480 3.9355 32 1 2.7030 3.6325 3.6875 33 1 4.0201 4.0560 6.0361 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660086608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:47 Heat of formation + Delta-G solvation = -21.969193 kcal Electronic energy + Delta-G solvation = -19744.578110 eV Core-core repulsion = 16514.815016 eV Total energy + Delta-G solvation = -3229.763094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.08707 -38.25809 -37.88962 -36.98685 -35.27356 -34.50335 -34.41406 -30.86343 -29.35878 -27.22928 -26.96182 -24.62361 -22.91662 -22.33962 -19.90824 -18.98977 -18.84646 -18.36948 -18.25109 -17.20741 -17.12058 -16.46454 -16.08146 -15.29043 -14.94645 -14.75433 -14.53461 -14.39754 -13.78089 -13.68057 -13.35444 -13.18419 -13.11542 -12.96233 -12.73825 -12.60485 -12.51938 -12.49010 -12.19516 -12.10954 -11.83285 -11.60326 -11.08444 -10.55034 -10.44024 -9.59671 -8.08956 -6.20711 -0.95771 0.33074 1.20212 1.43610 1.46400 1.54189 1.58269 1.94092 2.46559 2.86105 3.09463 3.19945 3.27729 3.37818 3.82376 3.93902 4.11666 4.18083 4.48794 4.63053 4.74566 4.89593 4.99610 5.05839 5.10545 5.17274 5.25626 5.66453 5.76577 5.92985 6.18861 6.35974 6.85978 7.03128 7.47713 8.94769 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.035402 B = 0.005209 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.716454 B = 5373.752937 C = 5532.195170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.266 3.734 3 H 0.037 0.963 4 C -0.536 4.536 5 H 0.051 0.949 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.949 3.051 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.279 1.279 12 N -0.986 5.986 13 C 0.097 3.903 14 S 2.603 3.397 15 O -0.985 6.985 16 O -0.981 6.981 17 C -0.533 4.533 18 C -0.052 4.052 19 C -0.211 4.211 20 C 0.001 3.999 21 N -0.386 5.386 22 O 0.085 5.915 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.048 0.952 26 H 0.264 0.736 27 H 0.037 0.963 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.189 0.811 31 H 0.187 0.813 32 H 0.205 0.795 33 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.673 2.486 12.705 13.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.162 3.838 3 H 0.055 0.945 4 C -0.576 4.576 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.825 5.825 13 C -0.048 4.048 14 S 2.698 3.302 15 O -0.975 6.975 16 O -0.972 6.972 17 C -0.662 4.662 18 C -0.117 4.117 19 C -0.233 4.233 20 C -0.177 4.177 21 N -0.091 5.091 22 O 0.020 5.980 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.207 0.793 31 H 0.205 0.795 32 H 0.222 0.778 33 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -1.335 2.179 13.717 13.953 hybrid contribution -0.396 0.207 -1.544 1.608 sum -1.731 2.386 12.173 12.524 Atomic orbital electron populations 1.22003 0.96380 1.00671 1.01201 1.18554 0.92471 0.91908 0.80905 0.94548 1.21632 1.31439 1.12887 0.91635 0.93041 1.25534 0.95317 0.95721 1.01335 1.69938 1.37293 1.23523 1.24283 0.85691 0.78683 0.78541 0.79509 1.19541 1.20935 1.20391 1.57305 1.70517 1.20672 1.34048 1.21447 1.01787 0.80145 1.01447 1.05120 0.76151 0.74133 0.74799 1.93521 1.68466 1.56828 1.78704 1.93557 1.73820 1.61554 1.68242 1.29328 1.15224 1.13344 1.08309 1.23494 1.03007 0.95151 0.90034 1.23291 1.02819 0.95872 1.01349 1.25803 1.00552 0.98765 0.92542 1.73890 1.14571 1.00621 1.20015 1.84837 1.53444 1.35102 1.24618 0.93688 0.91443 0.93317 0.92649 0.94448 0.89377 0.89814 0.79329 0.79533 0.77766 0.74879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.95 71.98 0.64 -5.08 16 2 C 0.27 12.08 2.57 44.24 0.11 12.19 16 3 H 0.04 1.85 6.87 -2.39 -0.02 1.83 16 4 C -0.54 -28.16 8.37 25.60 0.21 -27.94 16 5 H 0.05 2.74 7.65 -2.91 -0.02 2.72 16 6 C 0.02 1.10 5.30 84.66 0.45 1.55 16 7 N -0.91 -49.16 11.32 21.45 0.24 -48.92 16 8 Si 0.95 42.53 29.54 68.60 2.03 44.56 16 9 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 N -0.99 -36.90 2.99 -520.44 -1.56 -38.46 16 13 C 0.10 3.05 9.44 127.77 1.21 4.25 16 14 S 2.60 91.46 5.35 -56.49 -0.30 91.16 16 15 O -0.99 -38.80 17.09 -127.65 -2.18 -40.98 16 16 O -0.98 -42.81 16.57 -127.65 -2.12 -44.93 16 17 C -0.53 -11.99 6.74 71.24 0.48 -11.51 16 18 C -0.05 -1.31 6.75 25.04 0.17 -1.14 16 19 C -0.21 -4.62 11.09 22.40 0.25 -4.37 16 20 C 0.00 0.03 12.17 85.71 1.04 1.07 16 21 N -0.39 -10.45 12.07 -59.26 -0.72 -11.17 16 22 O 0.08 2.40 11.20 71.65 0.80 3.20 16 23 H 0.04 1.69 6.66 -2.39 -0.02 1.67 16 24 H 0.07 3.12 6.07 -2.39 -0.01 3.11 16 25 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 26 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 27 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 2.09 7.79 -2.39 -0.02 2.07 16 29 H 0.08 2.45 6.43 -2.39 -0.02 2.44 16 30 H 0.19 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.19 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.21 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.23 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -71.33 297.29 1.89 -69.44 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.12 Total: 7.08 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.57 Total: -30.98 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -2.03 Total: -98.55 kcal Atomic # 8 Polarization: -79.22 SS G_CDS: -3.49 Total: -82.71 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 91.46 SS G_CDS: -0.30 Total: 91.16 kcal Total: -71.33 1.89 -69.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660086608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.470 kcal (2) G-P(sol) polarization free energy of solvation -71.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds