Wall clock time and date at job start Mon Mar 30 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42099 * 104.27638 * 206.07118 * 14 12 2 16 16 O 1.42103 * 104.27623 * 333.92878 * 14 12 2 17 17 C 1.81395 * 104.45004 * 90.00099 * 14 12 2 18 18 C 1.50693 * 109.47252 * 180.02562 * 17 14 12 19 19 C 1.35447 * 126.78082 * 89.99779 * 18 17 14 20 20 C 1.41380 * 103.98762 * 179.97438 * 19 18 17 21 21 N 1.30174 * 106.39853 * 359.97438 * 20 19 18 22 22 O 1.20924 * 111.59933 * 359.73063 * 21 20 19 23 23 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 24 24 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 28 28 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 29 29 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 30 30 H 1.09007 * 109.46966 * 300.00032 * 17 14 12 31 31 H 1.09004 * 109.46911 * 59.99837 * 17 14 12 32 32 H 1.08003 * 128.00569 * 359.97438 * 19 18 17 33 33 H 1.08001 * 126.80045 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.7432 -0.5614 -3.5156 16 8 2.6122 1.4795 -2.1235 17 6 4.6649 -0.1731 -1.7060 18 6 5.6356 0.5188 -2.6278 19 6 6.1004 1.7858 -2.5131 20 6 6.9696 1.9324 -3.6185 21 7 6.9455 0.7986 -4.2578 22 8 6.2147 -0.0004 -3.7195 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5277 4.4376 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9863 29 1 1.5295 -2.5969 -0.4707 30 1 4.7758 0.2248 -0.6972 31 1 4.8700 -1.2436 -1.6989 32 1 5.8622 2.5153 -1.7532 33 1 7.5404 2.8109 -3.8807 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660086609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:49 Heat of formation + Delta-G solvation = 7.235850 kcal Electronic energy + Delta-G solvation = -19863.760579 eV Core-core repulsion = 16635.263910 eV Total energy + Delta-G solvation = -3228.496669 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -45.06785 -36.90441 -36.54410 -35.63742 -34.25078 -33.35822 -32.64165 -30.14414 -28.24429 -25.84039 -25.14410 -23.62587 -21.77655 -20.96862 -18.58262 -17.85962 -17.65487 -17.26547 -16.52049 -16.00458 -15.85776 -15.14944 -14.85316 -13.96349 -13.75372 -13.47912 -13.29833 -12.95233 -12.69384 -12.42365 -12.20931 -12.06171 -11.82355 -11.61463 -11.49715 -11.37371 -11.29781 -11.03486 -10.63300 -10.61240 -10.22202 -9.70033 -9.59680 -9.33751 -8.76420 -8.21310 -6.27661 -4.30803 0.33718 1.37713 2.14368 2.69847 3.10760 3.17000 3.29974 3.31377 4.00958 4.20347 4.24130 4.25633 4.47283 4.89548 4.93890 5.04047 5.22082 5.38708 5.47103 5.60396 5.88106 6.00149 6.10317 6.19066 6.33798 6.47054 6.56626 6.78276 7.15878 7.20958 7.50634 8.04995 8.29516 8.73389 9.32807 10.84185 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.025354 B = 0.006222 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.089930 B = 4499.248518 C = 4869.995772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.235 3.765 3 H 0.061 0.939 4 C -0.538 4.538 5 H 0.085 0.915 6 C 0.078 3.922 7 N -0.891 5.891 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.294 1.294 11 H -0.260 1.260 12 N -0.972 5.972 13 C 0.099 3.901 14 S 2.610 3.390 15 O -0.955 6.955 16 O -0.946 6.946 17 C -0.559 4.559 18 C -0.027 4.027 19 C -0.214 4.214 20 C -0.009 4.009 21 N -0.361 5.361 22 O 0.105 5.895 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.170 0.830 31 H 0.154 0.846 32 H 0.183 0.817 33 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.638 2.453 -8.852 10.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.130 3.870 3 H 0.078 0.922 4 C -0.577 4.577 5 H 0.103 0.897 6 C -0.126 4.126 7 N -0.527 5.527 8 Si 0.705 3.295 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.184 1.184 12 N -0.811 5.811 13 C -0.047 4.047 14 S 2.700 3.300 15 O -0.945 6.945 16 O -0.936 6.936 17 C -0.684 4.684 18 C -0.092 4.092 19 C -0.237 4.237 20 C -0.187 4.187 21 N -0.063 5.063 22 O 0.037 5.963 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.188 0.812 31 H 0.172 0.828 32 H 0.200 0.800 33 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 4.983 2.451 -10.497 11.875 hybrid contribution -0.274 0.938 1.604 1.878 sum 4.709 3.389 -8.893 10.618 Atomic orbital electron populations 1.22390 0.98407 1.01501 0.99334 1.19187 0.91448 0.93531 0.82804 0.92186 1.21240 1.33382 1.14678 0.88374 0.89750 1.24893 0.95398 0.96590 0.95704 1.69865 1.44769 1.40019 0.98089 0.87029 0.80934 0.83832 0.77680 1.20155 1.22094 1.18425 1.57230 1.62493 1.22075 1.39293 1.21358 0.99680 0.81063 1.02555 1.05154 0.75911 0.74667 0.74286 1.93573 1.83481 1.75555 1.41916 1.93582 1.80301 1.33523 1.86186 1.29619 1.20565 1.10619 1.07548 1.23310 1.00440 0.94147 0.91330 1.22812 1.01009 0.97379 1.02469 1.25113 1.01542 0.98023 0.93997 1.73887 1.10471 1.02006 1.19951 1.84863 1.43502 1.36330 1.31593 0.94472 0.92189 0.93228 0.92281 0.93196 0.92479 0.89430 0.81225 0.82805 0.79965 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.67 37.16 0.32 -2.88 16 2 C 0.23 5.01 2.16 -69.08 -0.15 4.86 16 3 H 0.06 1.33 5.93 -51.93 -0.31 1.02 16 4 C -0.54 -13.09 8.57 -34.44 -0.30 -13.38 16 5 H 0.08 2.15 7.58 -52.49 -0.40 1.76 16 6 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.89 -24.77 13.96 55.43 0.77 -23.99 16 8 Si 0.88 20.08 24.37 -169.99 -4.14 15.94 16 9 H -0.27 -6.15 6.87 56.52 0.39 -5.77 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.26 -5.77 6.53 56.52 0.37 -5.40 16 12 N -0.97 -17.68 2.99 -115.85 -0.35 -18.03 16 13 C 0.10 1.56 9.19 59.85 0.55 2.11 16 14 S 2.61 44.63 5.35 -107.50 -0.57 44.06 16 15 O -0.96 -17.77 17.09 -57.54 -0.98 -18.75 16 16 O -0.95 -18.59 16.57 -57.54 -0.95 -19.54 16 17 C -0.56 -7.64 6.74 36.00 0.24 -7.40 16 18 C -0.03 -0.39 6.75 -35.31 -0.24 -0.63 16 19 C -0.21 -2.71 11.09 -39.38 -0.44 -3.14 16 20 C -0.01 -0.10 12.17 -17.06 -0.21 -0.31 16 21 N -0.36 -5.28 12.07 30.35 0.37 -4.92 16 22 O 0.11 1.60 11.20 17.16 0.19 1.79 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.06 1.14 7.67 -51.93 -0.40 0.75 16 25 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 26 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.75 7.79 -51.93 -0.40 0.35 16 29 H 0.09 1.44 7.02 -51.93 -0.36 1.07 16 30 H 0.17 2.15 8.14 -51.92 -0.42 1.73 16 31 H 0.15 1.75 8.14 -51.92 -0.42 1.32 16 32 H 0.18 1.88 8.06 -52.48 -0.42 1.45 16 33 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 291.15 15.07 4.39 4.39 Total: -1.00 -31.39 291.15 -5.35 -36.74 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.76 Total: 1.15 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: -0.31 Total: -18.83 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.79 Total: -46.94 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.74 Total: -36.50 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -4.14 Total: 15.94 kcal Atomic # 16 Polarization: 44.63 SS G_CDS: -0.57 Total: 44.06 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.39 -5.35 -36.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660086609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.974 kcal (2) G-P(sol) polarization free energy of solvation -31.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds