Wall clock time and date at job start Mon Mar 30 2020 01:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 5 5 H 1.07993 * 120.00472 * 119.99561 * 4 2 1 6 6 C 1.37884 * 119.99909 * 299.99693 * 4 2 1 7 7 N 1.31512 * 120.00357 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99802 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.46841 * 89.99881 * 8 6 4 10 10 H 1.48494 * 109.47129 * 210.00104 * 8 6 4 11 11 H 1.48501 * 109.47268 * 330.00196 * 8 6 4 12 12 N 1.46500 * 109.46998 * 239.99774 * 2 1 3 13 13 C 1.46505 * 120.00155 * 300.00168 * 12 2 1 14 14 S 1.65599 * 120.00129 * 120.00044 * 12 2 1 15 15 O 1.42099 * 104.27638 * 206.07118 * 14 12 2 16 16 O 1.42103 * 104.27623 * 333.92878 * 14 12 2 17 17 C 1.81395 * 104.45004 * 90.00099 * 14 12 2 18 18 C 1.50693 * 109.47252 * 180.02562 * 17 14 12 19 19 C 1.35447 * 126.78082 * 89.99779 * 18 17 14 20 20 C 1.41380 * 103.98762 * 179.97438 * 19 18 17 21 21 N 1.30174 * 106.39853 * 359.97438 * 20 19 18 22 22 O 1.20924 * 111.59933 * 359.73063 * 21 20 19 23 23 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 24 24 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 26 26 H 0.97001 * 120.00117 * 180.02562 * 7 6 4 27 27 H 1.08997 * 109.47192 * 89.99362 * 13 12 2 28 28 H 1.08998 * 109.47450 * 210.00338 * 13 12 2 29 29 H 1.09005 * 109.46920 * 330.00020 * 13 12 2 30 30 H 1.09007 * 109.46966 * 300.00032 * 17 14 12 31 31 H 1.09004 * 109.46911 * 59.99837 * 17 14 12 32 32 H 1.08003 * 128.00569 * 359.97438 * 19 18 17 33 33 H 1.08001 * 126.80045 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6994 -0.2393 2.4828 7 7 2.1381 -0.8590 3.5566 8 14 0.6260 1.2800 2.6541 9 1 -0.8019 0.8746 2.6993 10 1 0.9774 1.9955 3.9070 11 1 0.8493 2.1774 1.4922 12 7 2.0184 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4280 14 16 2.9704 0.1140 -2.2863 15 8 2.7432 -0.5614 -3.5156 16 8 2.6122 1.4795 -2.1235 17 6 4.6649 -0.1731 -1.7060 18 6 5.6356 0.5188 -2.6278 19 6 6.1004 1.7858 -2.5131 20 6 6.9696 1.9324 -3.6185 21 7 6.9455 0.7986 -4.2578 22 8 6.2147 -0.0004 -3.7195 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9035 -0.5277 4.4376 27 1 0.7375 -2.1445 -1.9992 28 1 2.4628 -2.5821 -1.9863 29 1 1.5295 -2.5969 -0.4707 30 1 4.7758 0.2248 -0.6972 31 1 4.8700 -1.2436 -1.6989 32 1 5.8622 2.5153 -1.7532 33 1 7.5404 2.8109 -3.8807 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660086609.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:49 Heat of formation + Delta-G solvation = -16.199800 kcal Electronic energy + Delta-G solvation = -19864.776825 eV Core-core repulsion = 16635.263910 eV Total energy + Delta-G solvation = -3229.512915 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.08507 -38.35882 -38.06535 -37.06668 -35.27281 -34.49847 -34.40765 -31.78745 -29.34146 -27.26165 -26.93663 -24.61725 -22.92468 -22.49371 -19.94646 -19.10439 -18.82814 -18.75562 -18.12041 -17.37526 -17.23123 -16.56156 -16.08399 -15.44144 -14.94402 -14.87025 -14.53039 -14.39961 -14.12748 -13.82974 -13.76973 -13.47385 -13.26088 -13.11793 -12.93520 -12.68683 -12.64538 -12.49353 -12.19024 -11.96016 -11.60890 -11.42530 -11.31640 -10.71639 -10.53140 -9.69307 -8.26274 -6.30485 -0.97485 0.30976 1.19943 1.35968 1.44530 1.51011 1.52861 1.86522 2.35334 2.74888 3.04093 3.09204 3.26538 3.37705 3.79615 3.92745 4.01908 4.19696 4.50343 4.51977 4.63718 4.67266 4.70324 4.88857 4.94262 4.99626 5.16993 5.27205 5.49095 5.55798 5.83905 6.35913 6.76647 7.02461 7.35882 8.88377 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.025354 B = 0.006222 C = 0.005748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.089930 B = 4499.248518 C = 4869.995772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.029 3.971 7 N -0.936 5.936 8 Si 0.920 3.080 9 H -0.267 1.267 10 H -0.299 1.299 11 H -0.248 1.248 12 N -0.979 5.979 13 C 0.092 3.908 14 S 2.616 3.384 15 O -0.974 6.974 16 O -0.975 6.975 17 C -0.540 4.540 18 C -0.051 4.051 19 C -0.211 4.211 20 C 0.003 3.997 21 N -0.385 5.385 22 O 0.083 5.917 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.266 0.734 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.205 0.795 33 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.024 3.436 -9.718 11.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.130 3.870 3 H 0.074 0.926 4 C -0.561 4.561 5 H 0.083 0.917 6 C -0.170 4.170 7 N -0.576 5.576 8 Si 0.748 3.252 9 H -0.193 1.193 10 H -0.227 1.227 11 H -0.172 1.172 12 N -0.817 5.817 13 C -0.054 4.054 14 S 2.710 3.290 15 O -0.964 6.964 16 O -0.965 6.965 17 C -0.668 4.668 18 C -0.116 4.116 19 C -0.234 4.234 20 C -0.175 4.175 21 N -0.091 5.091 22 O 0.019 5.981 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.200 0.800 31 H 0.195 0.805 32 H 0.222 0.778 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 5.299 3.411 -11.392 13.019 hybrid contribution -0.264 0.620 1.792 1.914 sum 5.034 4.031 -9.600 11.566 Atomic orbital electron populations 1.22380 0.97534 1.02251 0.99785 1.18977 0.92225 0.93119 0.82701 0.92637 1.21449 1.31700 1.13529 0.89383 0.91654 1.25529 0.96802 0.99003 0.95678 1.69980 1.47041 1.41963 0.98575 0.86296 0.79977 0.81307 0.77644 1.19269 1.22652 1.17184 1.57144 1.63653 1.22861 1.38090 1.21536 1.01323 0.79963 1.02528 1.04801 0.76808 0.73701 0.73680 1.93547 1.84487 1.75614 1.42783 1.93539 1.81593 1.34996 1.86418 1.29352 1.17252 1.12489 1.07737 1.23495 1.01298 0.95063 0.91715 1.23289 1.00193 0.97036 1.02870 1.25804 1.00591 0.98259 0.92799 1.73886 1.11278 1.03057 1.20885 1.84841 1.44206 1.36985 1.32078 0.92782 0.91421 0.93949 0.92450 0.92186 0.89945 0.90481 0.80048 0.80487 0.77754 0.74746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.24 8.67 71.98 0.62 -5.62 16 2 C 0.24 9.73 2.16 44.25 0.10 9.83 16 3 H 0.06 2.37 5.93 -2.39 -0.01 2.36 16 4 C -0.52 -25.12 8.57 25.60 0.22 -24.90 16 5 H 0.07 3.34 7.58 -2.91 -0.02 3.32 16 6 C 0.03 1.52 5.45 84.66 0.46 1.98 16 7 N -0.94 -52.60 13.96 21.45 0.30 -52.30 16 8 Si 0.92 40.63 24.37 68.60 1.67 42.30 16 9 H -0.27 -11.32 6.87 99.48 0.68 -10.64 16 10 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 11 H -0.25 -10.37 6.53 99.48 0.65 -9.72 16 12 N -0.98 -34.22 2.99 -520.43 -1.56 -35.78 16 13 C 0.09 2.75 9.19 127.77 1.17 3.92 16 14 S 2.62 85.63 5.35 -56.49 -0.30 85.33 16 15 O -0.97 -35.00 17.09 -127.65 -2.18 -37.18 16 16 O -0.98 -37.06 16.57 -127.65 -2.12 -39.17 16 17 C -0.54 -13.71 6.74 71.23 0.48 -13.23 16 18 C -0.05 -1.35 6.75 25.04 0.17 -1.19 16 19 C -0.21 -4.78 11.09 22.40 0.25 -4.54 16 20 C 0.00 0.07 12.17 85.71 1.04 1.12 16 21 N -0.39 -10.62 12.07 -59.27 -0.72 -11.34 16 22 O 0.08 2.43 11.20 71.59 0.80 3.23 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.48 7.67 -2.39 -0.02 2.46 16 25 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 26 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 29 H 0.08 2.47 7.02 -2.38 -0.02 2.45 16 30 H 0.18 4.22 8.14 -2.39 -0.02 4.20 16 31 H 0.18 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.21 3.55 8.06 -2.91 -0.02 3.52 16 33 H 0.24 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -66.70 291.15 1.46 -65.24 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 1.05 Total: 12.30 kcal Atomic # 6 Polarization: -37.14 SS G_CDS: 4.52 Total: -32.63 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -1.97 Total: -99.42 kcal Atomic # 8 Polarization: -69.62 SS G_CDS: -3.49 Total: -73.12 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.67 Total: 42.30 kcal Atomic # 16 Polarization: 85.63 SS G_CDS: -0.30 Total: 85.33 kcal Total: -66.70 1.46 -65.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660086609.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.036 kcal (2) G-P(sol) polarization free energy of solvation -66.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds