Wall clock time and date at job start Mon Mar 30 2020 01:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 128.00667 * 2 1 4 4 O 1.34034 * 106.44531 * 179.97438 * 3 2 1 5 5 N 1.20925 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60250 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.79902 * 179.97438 * 6 5 4 8 8 S 1.81403 * 109.46780 * 89.97982 * 7 6 5 9 9 O 1.42101 * 110.54218 * 291.62226 * 8 7 6 10 10 O 1.42090 * 110.54624 * 68.37467 * 8 7 6 11 11 N 1.65601 * 104.44475 * 180.02562 * 8 7 6 12 12 C 1.46498 * 120.00223 * 65.00057 * 11 8 7 13 13 C 1.53008 * 109.47231 * 164.99844 * 12 11 8 14 14 C 1.50696 * 109.47080 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00350 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99981 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47065 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47069 * 119.99899 * 18 16 14 21 21 H 1.48498 * 109.47210 * 239.99873 * 18 16 14 22 22 H 1.08995 * 109.46802 * 270.02506 * 1 2 3 23 23 H 1.08999 * 109.46909 * 30.02560 * 1 2 3 24 24 H 1.09005 * 109.46860 * 150.03020 * 1 2 3 25 25 H 1.08000 * 126.77687 * 359.95633 * 3 2 1 26 26 H 1.09001 * 109.46799 * 209.97694 * 7 6 5 27 27 H 1.09000 * 109.47005 * 329.97981 * 7 6 5 28 28 H 0.97003 * 119.99926 * 244.99616 * 11 8 7 29 29 H 1.08994 * 109.47417 * 284.99691 * 12 11 8 30 30 H 1.08997 * 109.47329 * 45.00167 * 12 11 8 31 31 H 1.09004 * 109.46725 * 300.00246 * 13 12 11 32 32 H 1.08994 * 109.46882 * 59.99456 * 13 12 11 33 33 H 0.97000 * 119.99989 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5878 -0.6346 0.0014 6 6 2.3776 -1.1140 0.0021 7 6 1.9827 -2.5683 0.0026 8 16 1.8256 -3.1515 1.7132 9 8 3.0975 -3.1897 2.3457 10 8 0.7100 -2.5415 2.3475 11 7 1.3940 -4.7437 1.5688 12 6 2.3248 -5.7037 0.9702 13 6 1.8630 -7.1275 1.2873 14 6 2.8202 -8.1149 0.6710 15 1 3.6724 -7.7623 0.1090 16 6 2.6074 -9.4686 0.8238 17 7 1.5694 -9.8980 1.5077 18 14 3.7943 -10.6926 0.0604 19 1 4.8721 -9.9594 -0.6508 20 1 4.3906 -11.5355 1.1278 21 1 3.0639 -11.5560 -0.9020 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8903 -0.5134 25 1 2.0576 2.1094 -0.0007 26 1 1.0282 -2.6858 -0.5104 27 1 2.7460 -3.1522 -0.5117 28 1 0.5248 -5.0408 1.8807 29 1 2.3484 -5.5616 -0.1102 30 1 3.3226 -5.5458 1.3793 31 1 1.8394 -7.2696 2.3678 32 1 0.8652 -7.2854 0.8782 33 1 1.4195 -10.8504 1.6149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661366629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:29 Heat of formation + Delta-G solvation = -22.979723 kcal Electronic energy + Delta-G solvation = -18886.360388 eV Core-core repulsion = 15656.553473 eV Total energy + Delta-G solvation = -3229.806914 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -45.29534 -36.99543 -35.88612 -35.75156 -35.45041 -32.89711 -32.78226 -29.52839 -29.17037 -28.31136 -24.53618 -22.14698 -21.86442 -21.18706 -19.27422 -18.11009 -17.86312 -17.35765 -16.37931 -16.22739 -15.81835 -15.24329 -14.57262 -14.22841 -14.09550 -13.83960 -13.54035 -13.33001 -13.02578 -12.60588 -12.52930 -11.99602 -11.92017 -11.80063 -11.67994 -11.42350 -11.31318 -11.14355 -10.63182 -10.55044 -10.00508 -9.67545 -9.62677 -9.29022 -8.96468 -8.44318 -6.10924 -4.14582 0.21068 1.21401 1.88073 2.84131 2.99408 3.26853 3.34868 3.38842 3.54525 3.90524 4.01214 4.35265 4.39471 4.55045 4.76352 4.87792 5.13561 5.26096 5.30994 5.33186 5.48507 5.48791 5.66776 5.88956 6.09785 6.38927 6.66309 7.34005 7.52057 7.61170 7.87389 7.92901 8.24505 8.91487 9.50426 11.00500 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.034336 B = 0.003901 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.283302 B = 7176.822632 C = 7515.715971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.188 4.188 3 C -0.064 4.064 4 O 0.115 5.885 5 N -0.340 5.340 6 C 0.013 3.987 7 C -0.558 4.558 8 S 2.615 3.385 9 O -0.944 6.944 10 O -0.959 6.959 11 N -1.109 6.109 12 C 0.112 3.888 13 C 0.018 3.982 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.284 1.284 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.222 0.778 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.418 0.582 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.027 0.973 32 H 0.025 0.975 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 20.831 -4.813 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.193 4.193 3 C -0.145 4.145 4 O 0.044 5.956 5 N -0.041 5.041 6 C -0.146 4.146 7 C -0.683 4.683 8 S 2.703 3.297 9 O -0.934 6.934 10 O -0.949 6.949 11 N -0.872 5.872 12 C -0.013 4.013 13 C -0.021 4.021 14 C -0.564 4.564 15 H 0.078 0.922 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.210 1.210 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.238 0.762 26 H 0.170 0.830 27 H 0.169 0.831 28 H 0.253 0.747 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.043 0.957 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.978 20.623 -4.050 21.109 hybrid contribution -0.647 -0.890 -1.139 1.584 sum -2.625 19.732 -5.189 20.571 Atomic orbital electron populations 1.20243 0.86725 1.03419 1.03927 1.21407 0.99168 0.91163 1.07535 1.25832 0.82845 1.01281 1.04553 1.84850 1.29193 1.15146 1.66421 1.73968 1.21564 0.91466 1.17104 1.22286 0.89480 0.95706 1.07155 1.29231 1.11920 0.97221 1.29968 1.04956 0.74705 0.73739 0.76274 1.93618 1.43550 1.85646 1.70555 1.93564 1.52613 1.76621 1.72062 1.55580 1.28935 1.24913 1.77728 1.21739 0.91745 0.92026 0.95770 1.19289 0.97293 0.87415 0.98117 1.21128 1.10461 0.90907 1.33951 0.92163 1.25007 0.95504 0.98597 0.95185 1.69966 1.28011 1.14678 1.40427 0.86468 0.80994 0.81106 0.79036 1.19598 1.20891 1.20964 0.89500 0.90574 0.90721 0.76158 0.82973 0.83050 0.74724 0.92917 0.91119 0.95457 0.95696 0.92842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.67 10.37 36.01 0.37 -0.29 16 2 C -0.19 -1.95 6.32 -104.42 -0.66 -2.61 16 3 C -0.06 -0.53 12.26 29.74 0.36 -0.17 16 4 O 0.12 1.33 11.20 17.19 0.19 1.53 16 5 N -0.34 -4.92 12.07 33.42 0.40 -4.52 16 6 C 0.01 0.17 6.59 -82.10 -0.54 -0.37 16 7 C -0.56 -6.86 6.58 36.01 0.24 -6.63 16 8 S 2.62 40.88 5.44 -107.50 -0.59 40.29 16 9 O -0.94 -18.57 17.49 -57.54 -1.01 -19.57 16 10 O -0.96 -15.94 18.08 -57.54 -1.04 -16.98 16 11 N -1.11 -18.05 5.89 -10.61 -0.06 -18.12 16 12 C 0.11 2.16 6.07 -4.04 -0.02 2.13 16 13 C 0.02 0.43 5.11 -27.88 -0.14 0.29 16 14 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.22 0.68 8.06 -52.49 -0.42 0.26 16 26 H 0.15 1.37 7.66 -51.92 -0.40 0.97 16 27 H 0.15 1.75 8.14 -51.92 -0.42 1.33 16 28 H 0.42 6.29 8.62 -34.47 -0.30 5.99 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.41 7.69 -51.93 -0.40 1.01 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 306.78 15.07 4.62 4.62 Total: -1.00 -35.31 306.78 -6.56 -41.87 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -3.99 Total: 0.66 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.80 Total: -20.63 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 1.08 Total: -47.83 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.85 Total: -35.03 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 40.88 SS G_CDS: -0.59 Total: 40.29 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.31 -6.56 -41.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661366629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.888 kcal (2) G-P(sol) polarization free energy of solvation -35.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds