Wall clock time and date at job start Mon Mar 30 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35450 * 128.00667 * 2 1 4 4 O 1.34034 * 106.44531 * 179.97438 * 3 2 1 5 5 N 1.20925 * 111.56886 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60250 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.79902 * 179.97438 * 6 5 4 8 8 S 1.81403 * 109.46780 * 89.97982 * 7 6 5 9 9 O 1.42101 * 110.54218 * 291.62226 * 8 7 6 10 10 O 1.42090 * 110.54624 * 68.37467 * 8 7 6 11 11 N 1.65601 * 104.44475 * 180.02562 * 8 7 6 12 12 C 1.46498 * 120.00223 * 65.00057 * 11 8 7 13 13 C 1.53008 * 109.47231 * 164.99844 * 12 11 8 14 14 C 1.50696 * 109.47080 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00350 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99929 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99666 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99981 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47065 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47069 * 119.99899 * 18 16 14 21 21 H 1.48498 * 109.47210 * 239.99873 * 18 16 14 22 22 H 1.08995 * 109.46802 * 270.02506 * 1 2 3 23 23 H 1.08999 * 109.46909 * 30.02560 * 1 2 3 24 24 H 1.09005 * 109.46860 * 150.03020 * 1 2 3 25 25 H 1.08000 * 126.77687 * 359.95633 * 3 2 1 26 26 H 1.09001 * 109.46799 * 209.97694 * 7 6 5 27 27 H 1.09000 * 109.47005 * 329.97981 * 7 6 5 28 28 H 0.97003 * 119.99926 * 244.99616 * 11 8 7 29 29 H 1.08994 * 109.47417 * 284.99691 * 12 11 8 30 30 H 1.08997 * 109.47329 * 45.00167 * 12 11 8 31 31 H 1.09004 * 109.46725 * 300.00246 * 13 12 11 32 32 H 1.08994 * 109.46882 * 59.99456 * 13 12 11 33 33 H 0.97000 * 119.99989 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3411 1.0673 0.0000 4 8 3.5876 0.5747 0.0006 5 7 3.5878 -0.6346 0.0014 6 6 2.3776 -1.1140 0.0021 7 6 1.9827 -2.5683 0.0026 8 16 1.8256 -3.1515 1.7132 9 8 3.0975 -3.1897 2.3457 10 8 0.7100 -2.5415 2.3475 11 7 1.3940 -4.7437 1.5688 12 6 2.3248 -5.7037 0.9702 13 6 1.8630 -7.1275 1.2873 14 6 2.8202 -8.1149 0.6710 15 1 3.6724 -7.7623 0.1090 16 6 2.6074 -9.4686 0.8238 17 7 1.5694 -9.8980 1.5077 18 14 3.7943 -10.6926 0.0604 19 1 4.8721 -9.9594 -0.6508 20 1 4.3906 -11.5355 1.1278 21 1 3.0639 -11.5560 -0.9020 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8903 -0.5134 25 1 2.0576 2.1094 -0.0007 26 1 1.0282 -2.6858 -0.5104 27 1 2.7460 -3.1522 -0.5117 28 1 0.5248 -5.0408 1.8807 29 1 2.3484 -5.5616 -0.1102 30 1 3.3226 -5.5458 1.3793 31 1 1.8394 -7.2696 2.3678 32 1 0.8652 -7.2854 0.8782 33 1 1.4195 -10.8504 1.6149 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661366629.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:28 Heat of formation + Delta-G solvation = -50.668388 kcal Electronic energy + Delta-G solvation = -18887.561058 eV Core-core repulsion = 15656.553473 eV Total energy + Delta-G solvation = -3231.007585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -46.16429 -38.34765 -37.22593 -37.02082 -36.61434 -34.75150 -33.69486 -31.04403 -30.47358 -28.96779 -26.44158 -23.12417 -22.94557 -22.59761 -20.54323 -19.19241 -18.78468 -18.62699 -18.19438 -17.46298 -17.17265 -16.49350 -16.11060 -15.58714 -15.49388 -14.94648 -14.43166 -14.14808 -14.08923 -13.91011 -13.43554 -13.35614 -13.29331 -13.22705 -13.15856 -13.00910 -12.79864 -12.42505 -12.35930 -12.20299 -11.52946 -11.30232 -11.03040 -10.61590 -10.38967 -10.29652 -8.21622 -6.32267 -1.02077 0.47692 1.03537 1.42327 1.43860 1.55932 1.62182 2.26525 2.42300 2.54161 2.86693 3.02095 3.13605 3.37279 3.77440 3.90783 4.11299 4.17854 4.30565 4.50216 4.58233 4.79704 4.82226 4.83698 4.94522 4.94662 5.32413 5.48987 5.62170 5.80250 6.00557 6.21332 6.83884 7.12747 7.37288 8.90655 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.034336 B = 0.003901 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.283302 B = 7176.822632 C = 7515.715971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.204 4.204 3 C -0.042 4.042 4 O 0.112 5.888 5 N -0.382 5.382 6 C -0.017 4.017 7 C -0.537 4.537 8 S 2.623 3.377 9 O -0.992 6.992 10 O -0.971 6.971 11 N -1.110 6.110 12 C 0.124 3.876 13 C 0.018 3.982 14 C -0.544 4.544 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.260 1.260 20 H -0.282 1.282 21 H -0.277 1.277 22 H 0.079 0.921 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.274 0.726 26 H 0.189 0.811 27 H 0.160 0.840 28 H 0.422 0.578 29 H 0.083 0.917 30 H 0.060 0.940 31 H -0.003 1.003 32 H 0.014 0.986 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 22.470 -6.625 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.209 4.209 3 C -0.123 4.123 4 O 0.040 5.960 5 N -0.083 5.083 6 C -0.175 4.175 7 C -0.667 4.667 8 S 2.716 3.284 9 O -0.982 6.982 10 O -0.962 6.962 11 N -0.871 5.871 12 C -0.002 4.002 13 C -0.020 4.020 14 C -0.583 4.583 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.184 1.184 20 H -0.208 1.208 21 H -0.202 1.202 22 H 0.098 0.902 23 H 0.126 0.874 24 H 0.096 0.904 25 H 0.290 0.710 26 H 0.206 0.794 27 H 0.178 0.822 28 H 0.258 0.742 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.015 0.985 32 H 0.033 0.967 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.162 22.241 -5.819 23.091 hybrid contribution -0.635 -1.239 -0.587 1.511 sum -2.797 21.002 -6.405 22.135 Atomic orbital electron populations 1.20381 0.84999 1.05245 1.03980 1.21817 1.00446 0.90626 1.08057 1.26829 0.81011 1.03075 1.01359 1.84794 1.30901 1.14274 1.65981 1.73967 1.22733 0.92793 1.18819 1.22626 0.90165 0.96498 1.08247 1.28978 1.14355 0.97339 1.26029 1.04500 0.73327 0.73036 0.77519 1.93558 1.45380 1.86062 1.73228 1.93540 1.52656 1.76366 1.73590 1.55390 1.28586 1.25022 1.78108 1.21433 0.91486 0.89669 0.97589 1.19170 0.96575 0.90389 0.95894 1.21614 1.11031 0.91819 1.33838 0.91359 1.25927 0.97195 1.00767 0.95687 1.70089 1.29878 1.15179 1.41884 0.85395 0.78926 0.78536 0.78166 1.18419 1.20841 1.20244 0.90232 0.87448 0.90380 0.71018 0.79373 0.82161 0.74218 0.89934 0.92132 0.98477 0.96733 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 10.37 71.24 0.74 -0.37 16 2 C -0.20 -3.68 6.32 -19.73 -0.12 -3.81 16 3 C -0.04 -0.56 12.26 67.18 0.82 0.26 16 4 O 0.11 2.40 11.20 71.69 0.80 3.20 16 5 N -0.38 -10.69 12.07 -49.56 -0.60 -11.28 16 6 C -0.02 -0.43 6.59 43.58 0.29 -0.14 16 7 C -0.54 -12.29 6.58 71.24 0.47 -11.82 16 8 S 2.62 81.31 5.44 -56.49 -0.31 81.00 16 9 O -0.99 -39.90 17.49 -127.65 -2.23 -42.13 16 10 O -0.97 -31.93 18.08 -127.65 -2.31 -34.24 16 11 N -1.11 -36.04 5.89 -187.49 -1.10 -37.14 16 12 C 0.12 4.75 6.07 86.38 0.52 5.27 16 13 C 0.02 0.91 5.11 29.85 0.15 1.07 16 14 C -0.54 -29.57 9.11 25.60 0.23 -29.33 16 15 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -54.93 13.29 21.45 0.28 -54.64 16 18 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 23 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.08 0.90 7.66 -2.38 -0.02 0.88 16 25 H 0.27 0.27 8.06 -2.91 -0.02 0.25 16 26 H 0.19 2.83 7.66 -2.39 -0.02 2.81 16 27 H 0.16 3.42 8.14 -2.39 -0.02 3.40 16 28 H 0.42 12.83 8.62 -96.74 -0.83 12.00 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.06 2.44 7.69 -2.39 -0.02 2.42 16 31 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -78.23 306.78 0.43 -77.80 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.30 Total: 10.59 kcal Atomic # 6 Polarization: -41.83 SS G_CDS: 3.57 Total: -38.26 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -1.42 Total: -103.07 kcal Atomic # 8 Polarization: -69.43 SS G_CDS: -3.74 Total: -73.17 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 81.31 SS G_CDS: -0.31 Total: 81.00 kcal Total: -78.23 0.43 -77.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661366629.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.129 kcal (2) G-P(sol) polarization free energy of solvation -78.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds