Wall clock time and date at job start Mon Mar 30 2020 01:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46988 * 2 1 4 4 C 1.36930 * 119.99925 * 275.24728 * 3 2 1 5 5 H 1.08007 * 119.99986 * 146.57989 * 4 3 2 6 6 C 1.38822 * 120.00290 * 326.57873 * 4 3 2 7 7 N 1.31614 * 119.99413 * 336.13179 * 6 4 3 8 8 Si 1.86796 * 119.99913 * 156.13048 * 6 4 3 9 9 H 1.48500 * 109.47219 * 60.00535 * 8 6 4 10 10 H 1.48501 * 109.46852 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47590 * 300.00129 * 8 6 4 12 12 S 1.65598 * 119.99646 * 95.24900 * 3 2 1 13 13 O 1.42101 * 104.27455 * 153.92962 * 12 3 2 14 14 O 1.42097 * 104.28047 * 26.07123 * 12 3 2 15 15 C 1.81399 * 104.44725 * 269.99759 * 12 3 2 16 16 C 1.50701 * 109.47164 * 180.02562 * 15 12 3 17 17 N 1.30175 * 126.80439 * 89.97335 * 16 15 12 18 18 O 1.20922 * 111.60731 * 180.02562 * 17 16 15 19 19 C 1.34039 * 111.56520 * 0.02562 * 18 17 16 20 20 C 1.35448 * 106.44636 * 0.02562 * 19 18 17 21 21 C 1.50699 * 128.00506 * 179.97438 * 20 19 18 22 22 H 1.08995 * 109.47230 * 300.00234 * 1 2 3 23 23 H 1.09009 * 109.46943 * 59.99947 * 1 2 3 24 24 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47071 * 240.00498 * 2 1 3 26 26 H 1.08995 * 109.47116 * 119.99932 * 2 1 3 27 27 H 0.97004 * 119.99349 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47568 * 60.00013 * 15 12 3 29 29 H 1.08998 * 109.47129 * 300.00165 * 15 12 3 30 30 H 1.07997 * 126.77517 * 180.02562 * 19 18 17 31 31 H 1.08994 * 109.47053 * 270.01974 * 21 20 19 32 32 H 1.08998 * 109.47293 * 30.02522 * 21 20 19 33 33 H 1.09007 * 109.46966 * 150.01826 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1443 2.0629 -1.1809 5 1 1.9693 3.1283 -1.2108 6 6 2.4969 1.3847 -2.3397 7 7 3.1519 0.2458 -2.2620 8 14 2.0417 2.0885 -4.0090 9 1 2.6690 3.4248 -4.1706 10 1 2.5282 1.1803 -5.0785 11 1 0.5656 2.2197 -4.1052 12 16 2.4180 2.1181 1.4282 13 8 3.3745 3.1021 1.0591 14 8 2.7670 1.0443 2.2909 15 6 0.8780 2.9026 1.9791 16 6 1.1165 3.6149 3.2856 17 7 1.4962 4.8501 3.4423 18 8 1.6034 5.1380 4.6119 19 6 1.3004 4.1004 5.4045 20 6 0.9743 3.0734 4.5838 21 6 0.5560 1.6770 4.9660 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.3986 -0.2279 -3.0717 28 1 0.1105 2.1407 2.1152 29 1 0.5476 3.6211 1.2290 30 1 1.3137 4.0861 6.4843 31 1 1.4381 1.0414 5.0421 32 1 0.0420 1.7019 5.9269 33 1 -0.1151 1.2777 4.2054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661644663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:33 Heat of formation + Delta-G solvation = -2.591655 kcal Electronic energy + Delta-G solvation = -20026.133609 eV Core-core repulsion = 16797.210788 eV Total energy + Delta-G solvation = -3228.922821 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.95547 -36.09352 -35.87748 -35.42119 -34.78468 -32.54228 -31.69327 -29.26490 -29.00696 -27.99108 -24.61405 -22.00245 -21.62241 -21.23307 -18.51426 -17.76656 -17.47361 -17.08910 -16.32310 -15.58407 -15.15086 -14.55956 -14.53905 -13.75081 -13.53496 -13.25721 -13.02314 -12.89230 -12.48413 -12.36605 -12.21829 -11.94657 -11.28437 -11.11015 -11.08126 -11.00273 -10.93018 -10.92382 -10.82702 -10.44065 -10.16999 -9.82368 -9.50343 -9.37407 -9.00906 -7.72438 -6.25795 -3.93903 1.05751 1.53775 2.27901 3.22920 3.25160 3.27605 3.29765 3.77686 4.12283 4.36246 4.44736 4.77734 4.82311 4.96438 5.04277 5.21549 5.44400 5.59388 5.63729 5.70821 5.78725 5.88231 6.04316 6.20022 6.21444 6.32019 6.54387 6.88576 7.26432 7.41369 7.79178 8.28034 8.42076 9.00206 9.37801 10.76035 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.029412 B = 0.006317 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.779448 B = 4431.363994 C = 4812.491025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.107 3.893 3 N -0.843 5.843 4 C -0.287 4.287 5 H 0.091 0.909 6 C 0.038 3.962 7 N -0.856 5.856 8 Si 0.916 3.084 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 S 2.558 3.442 13 O -0.955 6.955 14 O -0.984 6.984 15 C -0.558 4.558 16 C 0.022 3.978 17 N -0.347 5.347 18 O 0.109 5.891 19 C -0.072 4.072 20 C -0.189 4.189 21 C -0.084 4.084 22 H 0.033 0.967 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.117 0.883 26 H 0.061 0.939 27 H 0.268 0.732 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.219 0.781 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 1.323 11.095 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.674 5.674 4 C -0.422 4.422 5 H 0.109 0.891 6 C -0.169 4.169 7 N -0.495 5.495 8 Si 0.742 3.258 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.199 1.199 12 S 2.655 3.345 13 O -0.945 6.945 14 O -0.973 6.973 15 C -0.680 4.680 16 C -0.137 4.137 17 N -0.049 5.049 18 O 0.039 5.961 19 C -0.153 4.153 20 C -0.193 4.193 21 C -0.141 4.141 22 H 0.052 0.948 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.134 0.866 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.236 0.764 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.827 2.232 10.686 12.876 hybrid contribution -1.166 -0.214 -0.492 1.283 sum -7.993 2.019 10.193 13.110 Atomic orbital electron populations 1.22246 0.98899 1.00256 1.00999 1.21394 0.91345 0.84209 1.05044 1.52679 1.76976 1.20554 1.17240 1.19080 1.45034 0.94054 0.84082 0.89091 1.25320 0.95011 0.96887 0.99679 1.69974 1.33552 1.16712 1.29284 0.86184 0.79040 0.79078 0.81513 1.19683 1.20912 1.19940 1.07712 0.75927 0.75178 0.75726 1.93481 1.55353 1.64003 1.81650 1.93420 1.81225 1.52585 1.70096 1.29431 1.27619 1.11459 0.99508 1.22515 1.04234 0.91428 0.95505 1.73931 1.17624 1.16253 0.97064 1.84826 1.64034 1.35835 1.11388 1.25760 1.03499 0.86723 0.99279 1.21405 1.06882 0.99550 0.91497 1.20210 1.02442 0.89616 1.01821 0.94809 0.92047 0.93147 0.86603 0.92037 0.92194 0.84041 0.83831 0.76424 0.89528 0.90882 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.21 37.16 0.38 -2.53 16 2 C 0.11 2.37 5.99 -4.04 -0.02 2.35 16 3 N -0.84 -20.47 2.78 -59.90 -0.17 -20.63 16 4 C -0.29 -7.47 8.78 -15.06 -0.13 -7.60 16 5 H 0.09 2.31 7.94 -52.48 -0.42 1.89 16 6 C 0.04 0.99 4.98 -17.43 -0.09 0.91 16 7 N -0.86 -23.03 11.28 55.49 0.63 -22.40 16 8 Si 0.92 19.97 29.62 -169.99 -5.03 14.93 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 12 S 2.56 59.45 5.37 -107.50 -0.58 58.88 16 13 O -0.96 -26.10 17.22 -57.54 -0.99 -27.09 16 14 O -0.98 -23.66 16.53 -57.54 -0.95 -24.61 16 15 C -0.56 -10.10 6.68 36.01 0.24 -9.86 16 16 C 0.02 0.40 6.59 -82.10 -0.54 -0.14 16 17 N -0.35 -6.41 12.07 33.42 0.40 -6.01 16 18 O 0.11 1.64 11.20 17.18 0.19 1.83 16 19 C -0.07 -0.84 12.26 29.74 0.36 -0.48 16 20 C -0.19 -2.71 6.32 -104.42 -0.66 -3.37 16 21 C -0.08 -0.97 10.37 36.01 0.37 -0.59 16 22 H 0.03 0.52 6.98 -51.93 -0.36 0.15 16 23 H 0.06 1.12 8.14 -51.92 -0.42 0.70 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.12 2.83 5.31 -51.93 -0.28 2.55 16 26 H 0.06 1.33 6.81 -51.93 -0.35 0.97 16 27 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 28 H 0.14 2.12 6.50 -51.93 -0.34 1.79 16 29 H 0.14 2.49 8.14 -51.92 -0.42 2.07 16 30 H 0.22 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.83 7.66 -51.92 -0.40 0.43 16 LS Contribution 297.83 15.07 4.49 4.49 Total: -1.00 -33.64 297.83 -5.91 -39.55 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -3.81 Total: 2.38 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -0.09 Total: -21.32 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.86 Total: -49.04 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -1.75 Total: -49.87 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.93 kcal Atomic # 16 Polarization: 59.45 SS G_CDS: -0.58 Total: 58.88 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.64 -5.91 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661644663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.963 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds