Wall clock time and date at job start Mon Mar 30 2020 01:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46988 * 2 1 4 4 C 1.36930 * 119.99925 * 275.24728 * 3 2 1 5 5 H 1.08007 * 119.99986 * 146.57989 * 4 3 2 6 6 C 1.38822 * 120.00290 * 326.57873 * 4 3 2 7 7 N 1.31614 * 119.99413 * 336.13179 * 6 4 3 8 8 Si 1.86796 * 119.99913 * 156.13048 * 6 4 3 9 9 H 1.48500 * 109.47219 * 60.00535 * 8 6 4 10 10 H 1.48501 * 109.46852 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47590 * 300.00129 * 8 6 4 12 12 S 1.65598 * 119.99646 * 95.24900 * 3 2 1 13 13 O 1.42101 * 104.27455 * 153.92962 * 12 3 2 14 14 O 1.42097 * 104.28047 * 26.07123 * 12 3 2 15 15 C 1.81399 * 104.44725 * 269.99759 * 12 3 2 16 16 C 1.50701 * 109.47164 * 180.02562 * 15 12 3 17 17 N 1.30175 * 126.80439 * 89.97335 * 16 15 12 18 18 O 1.20922 * 111.60731 * 180.02562 * 17 16 15 19 19 C 1.34039 * 111.56520 * 0.02562 * 18 17 16 20 20 C 1.35448 * 106.44636 * 0.02562 * 19 18 17 21 21 C 1.50699 * 128.00506 * 179.97438 * 20 19 18 22 22 H 1.08995 * 109.47230 * 300.00234 * 1 2 3 23 23 H 1.09009 * 109.46943 * 59.99947 * 1 2 3 24 24 H 1.08995 * 109.46830 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47071 * 240.00498 * 2 1 3 26 26 H 1.08995 * 109.47116 * 119.99932 * 2 1 3 27 27 H 0.97004 * 119.99349 * 180.02562 * 7 6 4 28 28 H 1.08995 * 109.47568 * 60.00013 * 15 12 3 29 29 H 1.08998 * 109.47129 * 300.00165 * 15 12 3 30 30 H 1.07997 * 126.77517 * 180.02562 * 19 18 17 31 31 H 1.08994 * 109.47053 * 270.01974 * 21 20 19 32 32 H 1.08998 * 109.47293 * 30.02522 * 21 20 19 33 33 H 1.09007 * 109.46966 * 150.01826 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1443 2.0629 -1.1809 5 1 1.9693 3.1283 -1.2108 6 6 2.4969 1.3847 -2.3397 7 7 3.1519 0.2458 -2.2620 8 14 2.0417 2.0885 -4.0090 9 1 2.6690 3.4248 -4.1706 10 1 2.5282 1.1803 -5.0785 11 1 0.5656 2.2197 -4.1052 12 16 2.4180 2.1181 1.4282 13 8 3.3745 3.1021 1.0591 14 8 2.7670 1.0443 2.2909 15 6 0.8780 2.9026 1.9791 16 6 1.1165 3.6149 3.2856 17 7 1.4962 4.8501 3.4423 18 8 1.6034 5.1380 4.6119 19 6 1.3004 4.1004 5.4045 20 6 0.9743 3.0734 4.5838 21 6 0.5560 1.6770 4.9660 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.3986 -0.2279 -3.0717 28 1 0.1105 2.1407 2.1152 29 1 0.5476 3.6211 1.2290 30 1 1.3137 4.0861 6.4843 31 1 1.4381 1.0414 5.0421 32 1 0.0420 1.7019 5.9269 33 1 -0.1151 1.2777 4.2054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661644663.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:33 Heat of formation + Delta-G solvation = -27.573473 kcal Electronic energy + Delta-G solvation = -20027.216902 eV Core-core repulsion = 16797.210788 eV Total energy + Delta-G solvation = -3230.006114 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 274.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.16408 -37.99358 -37.72116 -36.77156 -36.55948 -33.69361 -33.57794 -30.94734 -30.41067 -28.97263 -26.51254 -23.53857 -22.85287 -22.49080 -20.35236 -19.26234 -18.74306 -18.68081 -18.14533 -17.28508 -16.83892 -16.34690 -15.90672 -15.31052 -14.96239 -14.49739 -14.18321 -14.10217 -14.07195 -13.85139 -13.65704 -13.16867 -13.12521 -13.00316 -12.86859 -12.64783 -12.59113 -12.55827 -12.19795 -12.13821 -11.96377 -11.54342 -11.07470 -10.72916 -10.39169 -9.61050 -8.19089 -5.93989 -0.68700 0.49681 1.05830 1.48949 1.50036 1.58307 2.04036 2.32351 2.51932 2.78371 2.95561 3.11708 3.25816 3.53734 3.81580 3.98313 4.15501 4.33703 4.42409 4.57353 4.74861 4.76398 4.80583 4.82801 4.93591 4.99084 5.30619 5.31937 5.49167 5.64777 5.97014 6.48962 7.06082 7.15727 7.43179 8.82379 Molecular weight = 274.08amu Principal moments of inertia in cm(-1) A = 0.029412 B = 0.006317 C = 0.005817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.779448 B = 4431.363994 C = 4812.491025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.099 3.901 3 N -0.854 5.854 4 C -0.311 4.311 5 H 0.088 0.912 6 C -0.005 4.005 7 N -0.891 5.891 8 Si 0.977 3.023 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.258 1.258 12 S 2.558 3.442 13 O -1.010 7.010 14 O -1.001 7.001 15 C -0.527 4.527 16 C -0.017 4.017 17 N -0.386 5.386 18 O 0.113 5.887 19 C -0.043 4.043 20 C -0.206 4.206 21 C -0.087 4.087 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.269 0.731 28 H 0.176 0.824 29 H 0.149 0.851 30 H 0.279 0.721 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 1.576 12.902 16.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.027 4.027 3 N -0.687 5.687 4 C -0.446 4.446 5 H 0.105 0.895 6 C -0.209 4.209 7 N -0.531 5.531 8 Si 0.800 3.200 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.182 1.182 12 S 2.660 3.340 13 O -0.999 6.999 14 O -0.991 6.991 15 C -0.655 4.655 16 C -0.175 4.175 17 N -0.087 5.087 18 O 0.042 5.958 19 C -0.123 4.123 20 C -0.211 4.211 21 C -0.143 4.143 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.193 0.807 29 H 0.168 0.832 30 H 0.294 0.706 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.986 2.438 12.433 15.533 hybrid contribution -0.492 -0.245 -0.815 0.983 sum -9.478 2.193 11.618 15.154 Atomic orbital electron populations 1.22147 0.95212 1.02338 1.01837 1.21465 0.94450 0.83118 1.03674 1.52741 1.77541 1.21270 1.17105 1.19278 1.45842 0.94195 0.85260 0.89454 1.26142 0.94667 0.97214 1.02898 1.70088 1.34738 1.18098 1.30163 0.85255 0.79497 0.77953 0.77259 1.20055 1.20587 1.18206 1.07115 0.77159 0.74491 0.75252 1.93416 1.59062 1.64949 1.82521 1.93388 1.82629 1.53210 1.69878 1.28955 1.23984 1.12128 1.00456 1.22736 1.06158 0.92078 0.96497 1.73931 1.18797 1.17145 0.98870 1.84771 1.63305 1.36896 1.10822 1.26844 0.99863 0.84514 1.01096 1.21833 1.07687 1.01428 0.90185 1.20355 1.02303 0.87651 1.04040 0.92325 0.92806 0.90443 0.89087 0.92299 0.92104 0.80660 0.83250 0.70577 0.90716 0.86840 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.26 10.21 71.98 0.73 -4.53 16 2 C 0.10 4.43 5.99 86.38 0.52 4.95 16 3 N -0.85 -42.24 2.78 -343.44 -0.95 -43.20 16 4 C -0.31 -16.58 8.78 84.04 0.74 -15.85 16 5 H 0.09 4.58 7.94 -2.91 -0.02 4.55 16 6 C -0.01 -0.27 4.98 84.87 0.42 0.15 16 7 N -0.89 -49.32 11.28 21.65 0.24 -49.07 16 8 Si 0.98 41.34 29.62 68.60 2.03 43.37 16 9 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 12 S 2.56 120.74 5.37 -56.49 -0.30 120.44 16 13 O -1.01 -57.31 17.22 -127.65 -2.20 -59.51 16 14 O -1.00 -48.77 16.53 -127.65 -2.11 -50.88 16 15 C -0.53 -18.50 6.68 71.24 0.48 -18.02 16 16 C -0.02 -0.58 6.59 43.58 0.29 -0.29 16 17 N -0.39 -13.89 12.07 -49.55 -0.60 -14.49 16 18 O 0.11 3.15 11.20 71.64 0.80 3.95 16 19 C -0.04 -0.83 12.26 67.17 0.82 0.00 16 20 C -0.21 -5.29 6.32 -19.74 -0.12 -5.41 16 21 C -0.09 -1.69 10.37 71.24 0.74 -0.95 16 22 H 0.06 1.64 6.98 -2.39 -0.02 1.63 16 23 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 24 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 4.57 5.31 -2.39 -0.01 4.55 16 26 H 0.06 2.58 6.81 -2.39 -0.02 2.56 16 27 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 28 H 0.18 4.81 6.50 -2.39 -0.02 4.80 16 29 H 0.15 5.09 8.14 -2.39 -0.02 5.07 16 30 H 0.28 1.61 8.06 -2.91 -0.02 1.58 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.11 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.07 1.42 7.66 -2.38 -0.02 1.40 16 Total: -1.00 -77.07 297.83 2.65 -74.42 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 1.13 Total: 14.92 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 4.61 Total: -39.96 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -1.31 Total: -106.76 kcal Atomic # 8 Polarization: -102.93 SS G_CDS: -3.51 Total: -106.44 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Atomic # 16 Polarization: 120.74 SS G_CDS: -0.30 Total: 120.44 kcal Total: -77.07 2.65 -74.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661644663.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.847 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds