Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47269 * 2 1 4 4 O 1.42906 * 109.46857 * 240.00962 * 2 1 3 5 5 C 1.42894 * 114.00137 * 89.99681 * 4 2 1 6 6 C 1.50706 * 109.47263 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72549 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99418 * 10 8 6 12 12 H 1.48493 * 109.47010 * 209.99942 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99638 * 10 8 6 14 14 C 1.50696 * 109.47823 * 120.00606 * 2 1 3 15 15 C 1.38255 * 120.00140 * 84.99671 * 14 2 1 16 16 C 1.38211 * 120.00162 * 179.97438 * 15 14 2 17 17 C 1.38251 * 120.00032 * 0.02562 * 16 15 14 18 18 C 1.38211 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99972 * 180.02562 * 18 17 16 20 20 F 1.39892 * 109.47354 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.46986 * 120.00318 * 19 18 17 22 22 F 1.39903 * 109.46999 * 239.99727 * 19 18 17 23 23 C 1.38217 * 120.00118 * 264.72730 * 14 2 1 24 24 H 1.09004 * 109.46572 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46394 * 299.99231 * 1 2 3 26 26 H 1.08997 * 109.47448 * 59.99477 * 1 2 3 27 27 H 1.09001 * 109.47678 * 60.00187 * 5 4 2 28 28 H 1.08998 * 109.47532 * 300.00132 * 5 4 2 29 29 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 30 30 H 1.08004 * 119.99918 * 0.02562 * 15 14 2 31 31 H 1.08004 * 119.99992 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.00018 * 180.02562 * 17 16 15 33 33 H 1.07996 * 119.99701 * 359.97438 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1670 5 6 2.1999 0.1832 -2.2941 6 6 2.7013 -0.6278 -3.4612 7 1 2.8560 -1.6911 -3.3530 8 6 2.9564 -0.0134 -4.6688 9 7 2.7618 1.2804 -4.8023 10 14 3.5771 -1.0187 -6.1157 11 1 2.4215 -1.5240 -6.8994 12 1 4.4281 -0.1650 -6.9829 13 1 4.3753 -2.1664 -5.6148 14 6 2.0325 -0.7105 1.2303 15 6 2.1646 -2.0867 1.2284 16 6 2.6259 -2.7383 2.3565 17 6 2.9549 -2.0139 3.4872 18 6 2.8219 -0.6382 3.4896 19 6 3.1810 0.1514 4.7219 20 9 3.6207 -0.7211 5.7231 21 9 4.2004 1.0586 4.4138 22 9 2.0557 0.8499 5.1725 23 6 2.3666 0.0142 2.3588 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 2.9318 0.9516 -2.0451 28 1 1.2537 0.6550 -2.5588 29 1 2.9409 1.7127 -5.6520 30 1 1.9080 -2.6526 0.3449 31 1 2.7295 -3.8134 2.3549 32 1 3.3158 -2.5231 4.3687 33 1 2.2680 1.0896 2.3587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205610389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -184.756964 kcal Electronic energy + Delta-G solvation = -20632.602601 eV Core-core repulsion = 16822.020151 eV Total energy + Delta-G solvation = -3810.582450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -50.23524 -47.76838 -47.68025 -39.62126 -37.04280 -33.22161 -32.19889 -31.75577 -29.16193 -27.19568 -26.04694 -23.76065 -22.45302 -22.19030 -20.60708 -18.55261 -18.42912 -18.13878 -16.53008 -16.23326 -15.92645 -14.93054 -14.79381 -14.61559 -14.45967 -14.26340 -14.14460 -14.08977 -13.93631 -13.85895 -13.66175 -12.89886 -12.69531 -12.53289 -12.18920 -12.02713 -11.52385 -11.34632 -11.21683 -10.90366 -10.80949 -10.42675 -10.07372 -9.20896 -9.17166 -9.03893 -8.77464 -8.25209 -6.16386 -4.18612 0.97255 1.23671 2.59145 3.26869 3.32312 3.36966 3.50000 3.64920 3.94132 4.28551 4.36754 4.59733 4.79329 4.94127 5.09484 5.20383 5.31883 5.40561 5.53099 5.65986 5.74954 5.82665 5.99081 6.10023 6.22447 6.38728 6.48596 6.58875 6.79625 7.03149 7.35483 7.73062 8.07625 8.46234 8.93389 9.46446 10.94997 Molecular weight = 274.09amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.003735 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.238289 B = 7495.391937 C = 7596.422913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.121 3.879 3 H 0.064 0.936 4 O -0.384 6.384 5 C 0.196 3.804 6 C -0.516 4.516 7 H 0.067 0.933 8 C 0.058 3.942 9 N -0.898 5.898 10 Si 0.908 3.092 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.271 1.271 14 C -0.071 4.071 15 C -0.056 4.056 16 C -0.125 4.125 17 C -0.081 4.081 18 C -0.190 4.190 19 C 0.510 3.490 20 F -0.180 7.180 21 F -0.177 7.177 22 F -0.179 7.179 23 C -0.066 4.066 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.265 0.735 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.651 -3.817 17.927 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 H 0.082 0.918 4 O -0.304 6.304 5 C 0.122 3.878 6 C -0.555 4.555 7 H 0.085 0.915 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.735 3.265 11 H -0.204 1.204 12 H -0.210 1.210 13 H -0.196 1.196 14 C -0.071 4.071 15 C -0.074 4.074 16 C -0.143 4.143 17 C -0.099 4.099 18 C -0.191 4.191 19 C 0.456 3.544 20 F -0.162 7.162 21 F -0.158 7.158 22 F -0.160 7.160 23 C -0.084 4.084 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.024 0.976 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.586 -3.836 17.814 18.291 hybrid contribution 0.365 0.122 -0.607 0.719 sum -1.221 -3.714 17.207 17.645 Atomic orbital electron populations 1.22239 0.95527 1.02589 1.01918 1.20673 0.93287 0.95008 0.84868 0.91795 1.87888 1.85911 1.36835 1.19809 1.20283 0.95277 0.90091 0.82189 1.21026 1.44377 0.95620 0.94440 0.91527 1.24936 0.95544 0.95113 0.98788 1.69957 1.48748 1.09161 1.25781 0.86339 0.78810 0.79818 0.81557 1.20436 1.21047 1.19612 1.19997 0.98204 0.94290 0.94599 1.21387 0.93882 0.94223 0.97919 1.21188 1.00028 1.00359 0.92682 1.20935 0.97771 0.91945 0.99279 1.19808 1.10356 0.95014 0.93917 1.18326 0.74556 0.77807 0.83710 1.93143 1.89845 1.69326 1.63840 1.93222 1.60757 1.68875 1.92993 1.93208 1.52049 1.80298 1.90464 1.20685 0.96114 1.00242 0.91380 0.92013 0.92500 0.91539 0.97579 0.97421 0.92582 0.84081 0.84906 0.84861 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 9.51 37.16 0.35 -2.18 16 2 C 0.12 2.12 2.93 -27.89 -0.08 2.04 16 3 H 0.06 1.12 7.69 -51.93 -0.40 0.72 16 4 O -0.38 -8.66 9.12 -35.23 -0.32 -8.98 16 5 C 0.20 5.14 5.50 36.01 0.20 5.34 16 6 C -0.52 -14.74 9.43 -34.44 -0.32 -15.06 16 7 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.31 13.29 55.43 0.74 -25.57 16 10 Si 0.91 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 14 C -0.07 -1.08 5.01 -104.63 -0.52 -1.61 16 15 C -0.06 -0.80 9.35 -39.58 -0.37 -1.17 16 16 C -0.12 -1.46 10.05 -39.59 -0.40 -1.85 16 17 C -0.08 -0.93 9.43 -39.59 -0.37 -1.30 16 18 C -0.19 -2.40 5.37 -104.62 -0.56 -2.96 16 19 C 0.51 6.16 3.32 36.01 0.12 6.28 16 20 F -0.18 -2.06 15.97 2.25 0.04 -2.03 16 21 F -0.18 -2.28 17.23 2.25 0.04 -2.25 16 22 F -0.18 -2.18 17.24 2.25 0.04 -2.14 16 23 C -0.07 -0.90 9.23 -39.58 -0.37 -1.27 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 27 H 0.01 0.18 8.09 -51.93 -0.42 -0.24 16 28 H 0.01 0.21 7.87 -51.93 -0.41 -0.19 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.14 2.08 7.63 -52.48 -0.40 1.68 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.13 1.24 7.16 -52.48 -0.38 0.86 16 33 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 303.12 15.07 4.57 4.57 Total: -1.00 -29.71 303.12 -6.00 -35.71 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -3.65 Total: -3.46 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.43 Total: -12.23 kcal Atomic # 7 Polarization: -26.31 SS G_CDS: 0.74 Total: -25.57 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.32 Total: -8.98 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.11 Total: -6.42 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.71 -6.00 -35.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.048 kcal (2) G-P(sol) polarization free energy of solvation -29.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds