Wall clock time and date at job start Mon Mar 30 2020 01:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47269 * 2 1 4 4 O 1.42906 * 109.46857 * 240.00962 * 2 1 3 5 5 C 1.42894 * 114.00137 * 89.99681 * 4 2 1 6 6 C 1.50706 * 109.47263 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99302 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00436 * 179.72549 * 6 5 4 9 9 N 1.31515 * 119.99684 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00405 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47154 * 89.99418 * 10 8 6 12 12 H 1.48493 * 109.47010 * 209.99942 * 10 8 6 13 13 H 1.48502 * 109.46736 * 329.99638 * 10 8 6 14 14 C 1.50696 * 109.47823 * 120.00606 * 2 1 3 15 15 C 1.38255 * 120.00140 * 84.99671 * 14 2 1 16 16 C 1.38211 * 120.00162 * 179.97438 * 15 14 2 17 17 C 1.38251 * 120.00032 * 0.02562 * 16 15 14 18 18 C 1.38211 * 120.00128 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99972 * 180.02562 * 18 17 16 20 20 F 1.39892 * 109.47354 * 0.02562 * 19 18 17 21 21 F 1.39899 * 109.46986 * 120.00318 * 19 18 17 22 22 F 1.39903 * 109.46999 * 239.99727 * 19 18 17 23 23 C 1.38217 * 120.00118 * 264.72730 * 14 2 1 24 24 H 1.09004 * 109.46572 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46394 * 299.99231 * 1 2 3 26 26 H 1.08997 * 109.47448 * 59.99477 * 1 2 3 27 27 H 1.09001 * 109.47678 * 60.00187 * 5 4 2 28 28 H 1.08998 * 109.47532 * 300.00132 * 5 4 2 29 29 H 0.97004 * 120.00247 * 180.02562 * 9 8 6 30 30 H 1.08004 * 119.99918 * 0.02562 * 15 14 2 31 31 H 1.08004 * 119.99992 * 180.02562 * 16 15 14 32 32 H 1.08003 * 120.00018 * 180.02562 * 17 16 15 33 33 H 1.07996 * 119.99701 * 359.97438 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1670 5 6 2.1999 0.1832 -2.2941 6 6 2.7013 -0.6278 -3.4612 7 1 2.8560 -1.6911 -3.3530 8 6 2.9564 -0.0134 -4.6688 9 7 2.7618 1.2804 -4.8023 10 14 3.5771 -1.0187 -6.1157 11 1 2.4215 -1.5240 -6.8994 12 1 4.4281 -0.1650 -6.9829 13 1 4.3753 -2.1664 -5.6148 14 6 2.0325 -0.7105 1.2303 15 6 2.1646 -2.0867 1.2284 16 6 2.6259 -2.7383 2.3565 17 6 2.9549 -2.0139 3.4872 18 6 2.8219 -0.6382 3.4896 19 6 3.1810 0.1514 4.7219 20 9 3.6207 -0.7211 5.7231 21 9 4.2004 1.0586 4.4138 22 9 2.0557 0.8499 5.1725 23 6 2.3666 0.0142 2.3588 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 2.9318 0.9516 -2.0451 28 1 1.2537 0.6550 -2.5588 29 1 2.9409 1.7127 -5.6520 30 1 1.9080 -2.6526 0.3449 31 1 2.7295 -3.8134 2.3549 32 1 3.3158 -2.5231 4.3687 33 1 2.2680 1.0896 2.3587 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205610389.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:21 Heat of formation + Delta-G solvation = -200.452705 kcal Electronic energy + Delta-G solvation = -20633.283220 eV Core-core repulsion = 16822.020151 eV Total energy + Delta-G solvation = -3811.263069 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.092 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.19609 -48.71069 -48.66046 -40.74215 -38.64244 -35.13530 -33.74162 -32.79201 -30.40934 -29.24232 -27.05061 -25.21373 -24.18208 -23.33299 -21.82012 -19.51730 -19.39397 -19.30986 -18.50927 -17.55060 -17.23225 -16.52707 -16.20132 -15.98470 -15.66422 -15.57204 -15.24802 -15.10160 -14.97037 -14.82199 -14.76481 -14.39636 -14.07764 -13.69864 -13.65093 -13.31982 -13.16635 -12.89336 -12.72223 -12.51438 -12.23787 -12.19192 -11.66649 -11.27365 -10.93110 -10.29573 -10.19608 -9.87744 -8.32230 -6.44463 -0.06147 0.21000 1.40735 1.43033 1.54900 1.61647 2.33254 2.46413 2.66228 2.93421 3.02189 3.16305 3.39763 3.70320 3.84543 4.07552 4.16231 4.24069 4.34094 4.42422 4.63798 4.70409 4.79714 4.89372 4.96776 5.10826 5.12129 5.26432 5.34866 5.45986 5.57890 5.76870 5.95951 6.51817 6.80387 7.27368 8.79908 Molecular weight = 274.09amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.003735 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.238289 B = 7495.391937 C = 7596.422913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.112 3.888 3 H 0.057 0.943 4 O -0.394 6.394 5 C 0.212 3.788 6 C -0.547 4.547 7 H 0.064 0.936 8 C 0.008 3.992 9 N -0.930 5.930 10 Si 0.981 3.019 11 H -0.268 1.268 12 H -0.276 1.276 13 H -0.264 1.264 14 C -0.090 4.090 15 C -0.072 4.072 16 C -0.114 4.114 17 C -0.073 4.073 18 C -0.194 4.194 19 C 0.516 3.484 20 F -0.173 7.173 21 F -0.183 7.183 22 F -0.179 7.179 23 C -0.071 4.071 24 H 0.065 0.935 25 H 0.085 0.915 26 H 0.049 0.951 27 H -0.017 1.017 28 H -0.009 1.009 29 H 0.270 0.730 30 H 0.130 0.870 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.229 -5.317 18.838 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.075 0.925 4 O -0.314 6.314 5 C 0.137 3.863 6 C -0.585 4.585 7 H 0.082 0.918 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.804 3.196 11 H -0.193 1.193 12 H -0.201 1.201 13 H -0.188 1.188 14 C -0.090 4.090 15 C -0.090 4.090 16 C -0.132 4.132 17 C -0.090 4.090 18 C -0.195 4.195 19 C 0.462 3.538 20 F -0.155 7.155 21 F -0.164 7.164 22 F -0.161 7.161 23 C -0.089 4.089 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.068 0.932 27 H 0.001 0.999 28 H 0.009 0.991 29 H 0.079 0.921 30 H 0.148 0.852 31 H 0.183 0.817 32 H 0.180 0.820 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.174 -5.336 18.751 19.531 hybrid contribution 0.222 0.599 -0.758 0.992 sum -0.952 -4.737 17.993 18.630 Atomic orbital electron populations 1.22172 0.93819 1.03045 1.02479 1.20931 0.94792 0.94791 0.84134 0.92521 1.87833 1.86443 1.36807 1.20360 1.19854 0.93514 0.89664 0.83300 1.21384 1.45476 0.95793 0.95837 0.91813 1.25925 0.95170 0.96281 1.01699 1.70067 1.49163 1.10873 1.26870 0.85210 0.78560 0.78280 0.77554 1.19264 1.20139 1.18809 1.19789 1.00324 0.94888 0.94007 1.21427 0.94949 0.93826 0.98765 1.21484 0.98309 1.01921 0.91455 1.21306 0.96233 0.91440 1.00056 1.19934 1.10111 0.95767 0.93690 1.18188 0.74365 0.77651 0.83608 1.93156 1.89760 1.69051 1.63504 1.93215 1.61033 1.69126 1.93065 1.93210 1.52084 1.80336 1.90447 1.20723 0.96226 1.00655 0.91345 0.91581 0.89644 0.93169 0.99894 0.99144 0.92078 0.85239 0.81702 0.82035 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.51 71.98 0.68 -4.21 16 2 C 0.11 4.05 2.93 29.85 0.09 4.13 16 3 H 0.06 2.10 7.69 -2.38 -0.02 2.08 16 4 O -0.39 -18.42 9.12 -148.98 -1.36 -19.78 16 5 C 0.21 11.61 5.50 71.24 0.39 12.01 16 6 C -0.55 -31.95 9.43 25.60 0.24 -31.71 16 7 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 8 C 0.01 0.45 5.46 84.65 0.46 0.91 16 9 N -0.93 -55.36 13.29 21.45 0.28 -55.08 16 10 Si 0.98 43.71 29.54 68.60 2.03 45.73 16 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 12 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 14 C -0.09 -2.74 5.01 -19.87 -0.10 -2.84 16 15 C -0.07 -1.99 9.35 22.27 0.21 -1.78 16 16 C -0.11 -2.36 10.05 22.27 0.22 -2.14 16 17 C -0.07 -1.44 9.43 22.27 0.21 -1.23 16 18 C -0.19 -4.52 5.37 -19.87 -0.11 -4.63 16 19 C 0.52 11.43 3.32 71.24 0.24 11.66 16 20 F -0.17 -3.51 15.97 44.97 0.72 -2.79 16 21 F -0.18 -4.46 17.23 44.97 0.77 -3.69 16 22 F -0.18 -4.07 17.24 44.97 0.78 -3.29 16 23 C -0.07 -1.90 9.23 22.27 0.21 -1.69 16 24 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.05 1.69 7.87 -2.39 -0.02 1.67 16 27 H -0.02 -0.97 8.09 -2.39 -0.02 -0.99 16 28 H -0.01 -0.52 7.87 -2.39 -0.02 -0.54 16 29 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.13 3.84 7.63 -2.91 -0.02 3.82 16 31 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.16 2.31 7.16 -2.91 -0.02 2.29 16 33 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -64.19 303.12 7.09 -57.10 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: 1.12 Total: 3.32 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: 2.75 Total: -21.52 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -1.36 Total: -19.78 kcal Atomic # 9 Polarization: -12.03 SS G_CDS: 2.27 Total: -9.77 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.19 7.09 -57.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205610389.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.357 kcal (2) G-P(sol) polarization free energy of solvation -64.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds