Wall clock time and date at job start Mon Mar 30 2020 01:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35971 * 117.00035 * 2 1 4 4 C 1.38739 * 120.41879 * 0.02562 * 3 2 1 5 5 C 1.39787 * 118.29602 * 179.97438 * 4 3 2 6 6 C 1.48348 * 120.48471 * 180.02562 * 5 4 3 7 7 C 1.38912 * 119.61678 * 179.72304 * 6 5 4 8 8 C 1.40833 * 118.76153 * 179.71770 * 7 6 5 9 9 C 1.41539 * 120.98494 * 180.28375 * 8 7 6 10 10 H 1.07997 * 119.99764 * 203.54878 * 9 8 7 11 11 C 1.40041 * 120.00047 * 23.54733 * 9 8 7 12 12 N 1.30738 * 120.00097 * 17.01528 * 11 9 8 13 13 Si 1.86794 * 119.99826 * 197.01976 * 11 9 8 14 14 H 1.48498 * 109.47404 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47186 * 120.00126 * 13 11 9 16 16 H 1.48500 * 109.47138 * 240.00068 * 13 11 9 17 17 C 1.41140 * 118.02953 * 0.54657 * 8 7 6 18 18 C 1.37734 * 119.07381 * 359.73316 * 17 8 7 19 19 N 1.31929 * 121.15773 * 359.97438 * 18 17 8 20 20 C 1.39277 * 119.03367 * 359.97438 * 5 4 3 21 21 N 1.31778 * 120.73727 * 0.02562 * 20 5 4 22 22 C 1.32020 * 121.87455 * 359.72471 * 21 20 5 23 23 F 1.35105 * 119.55350 * 180.26707 * 22 21 20 24 24 H 1.08998 * 109.47100 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47498 * 300.00425 * 1 2 3 26 26 H 1.09008 * 109.46719 * 59.99960 * 1 2 3 27 27 H 1.07999 * 120.85223 * 359.95381 * 4 3 2 28 28 H 1.08003 * 120.61742 * 359.97438 * 7 6 5 29 29 H 0.96995 * 120.00061 * 179.97438 * 12 11 9 30 30 H 1.07997 * 120.46760 * 179.76070 * 17 8 7 31 31 H 1.08004 * 119.41738 * 180.02562 * 18 17 8 32 32 H 1.08001 * 119.63333 * 179.97438 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2992 2.3806 0.0005 5 6 1.9795 3.6017 0.0011 6 6 1.2290 4.8813 0.0022 7 6 1.9234 6.0844 0.0086 8 6 1.1928 7.2885 0.0035 9 6 1.8523 8.5409 0.0036 10 1 1.3438 9.4188 0.3736 11 6 3.1641 8.6415 -0.4762 12 7 3.6636 7.6884 -1.2186 13 14 4.2003 10.1376 -0.0552 14 1 3.4087 11.0656 0.7919 15 1 5.4147 9.7069 0.6830 16 1 4.6010 10.8302 -1.3062 17 6 -0.2163 7.2093 0.0040 18 6 -0.8170 5.9699 0.0038 19 7 -0.0988 4.8632 0.0026 20 6 3.3723 3.5995 0.0016 21 7 4.0440 2.4658 0.0011 22 6 3.4349 1.2946 0.0054 23 9 4.1701 0.1611 0.0102 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 0.2197 2.3480 0.0002 28 1 3.0033 6.0962 0.0131 29 1 4.5720 7.7582 -1.5512 30 1 -0.8153 8.1080 0.0041 31 1 -1.8950 5.9028 0.0038 32 1 3.9078 4.5375 0.0016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245073768.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:20 Heat of formation + Delta-G solvation = -36.067913 kcal Electronic energy + Delta-G solvation = -19967.663770 eV Core-core repulsion = 16614.218147 eV Total energy + Delta-G solvation = -3353.445623 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.086 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.04249 -41.71900 -40.16801 -39.19730 -36.09132 -34.20666 -32.50833 -32.25765 -30.11886 -28.50047 -27.79775 -25.15877 -24.65859 -23.17932 -22.36348 -19.82771 -19.17202 -18.62332 -18.51123 -17.58069 -17.31632 -16.45444 -16.28299 -16.24647 -15.99860 -15.63839 -15.24931 -14.74909 -14.68469 -14.42296 -14.22905 -13.88482 -13.56699 -13.20349 -12.91698 -12.70636 -12.53407 -12.49892 -11.99115 -11.91244 -11.34699 -11.08441 -11.00046 -10.04734 -9.96534 -9.80781 -9.03331 -8.72709 -6.58447 -0.55683 -0.03763 0.95598 0.96694 1.41540 1.54286 1.56365 1.89562 2.17915 2.39628 2.53029 2.80250 3.22268 3.34657 3.69393 3.71644 3.83387 4.27591 4.36057 4.36534 4.46411 4.59712 4.70904 4.80378 4.85118 4.97661 5.09057 5.14992 5.25367 5.39113 5.48125 5.87801 6.00516 6.14273 6.41236 6.50156 6.74349 6.77650 7.58327 8.20613 Molecular weight = 274.09amu Principal moments of inertia in cm(-1) A = 0.022495 B = 0.005195 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.410183 B = 5388.740385 C = 6551.223076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.314 6.314 3 C 0.066 3.934 4 C -0.108 4.108 5 C -0.042 4.042 6 C 0.131 3.869 7 C -0.206 4.206 8 C 0.095 3.905 9 C -0.480 4.480 10 H 0.086 0.914 11 C 0.042 3.958 12 N -0.809 5.809 13 Si 0.983 3.017 14 H -0.256 1.256 15 H -0.264 1.264 16 H -0.266 1.266 17 C -0.284 4.284 18 C 0.107 3.893 19 N -0.570 5.570 20 C 0.106 3.894 21 N -0.487 5.487 22 C 0.253 3.747 23 F -0.112 7.112 24 H 0.135 0.865 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.173 0.827 28 H 0.127 0.873 29 H 0.295 0.705 30 H 0.117 0.883 31 H 0.163 0.837 32 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -7.455 1.733 8.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.227 6.227 3 C 0.016 3.984 4 C -0.135 4.135 5 C -0.045 4.045 6 C 0.000 4.000 7 C -0.228 4.228 8 C 0.088 3.912 9 C -0.510 4.510 10 H 0.104 0.896 11 C -0.176 4.176 12 N -0.435 5.435 13 Si 0.803 3.197 14 H -0.179 1.179 15 H -0.188 1.188 16 H -0.191 1.191 17 C -0.307 4.307 18 C -0.048 4.048 19 N -0.285 5.285 20 C -0.052 4.052 21 N -0.201 5.201 22 C 0.098 3.902 23 F -0.091 7.091 24 H 0.153 0.847 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.191 0.809 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.135 0.865 31 H 0.180 0.820 32 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -2.752 -8.614 1.589 9.182 hybrid contribution 0.057 1.523 -0.061 1.525 sum -2.694 -7.091 1.527 7.738 Atomic orbital electron populations 1.23523 0.75315 1.06467 1.02694 1.86131 1.24294 1.23856 1.88370 1.19528 0.90827 0.86971 1.01028 1.21848 1.02376 0.89007 1.00235 1.19619 0.93471 0.92864 0.98557 1.19206 0.90324 0.90679 0.99758 1.22281 1.00853 0.91747 1.07951 1.18183 0.92195 0.93837 0.87022 1.19954 0.98678 0.95141 1.37243 0.89590 1.26795 0.98597 1.00830 0.91426 1.69768 1.17076 1.34165 1.22446 0.85128 0.77903 0.77378 0.79258 1.17948 1.18806 1.19070 1.22181 0.94923 0.98565 1.14997 1.22387 0.99600 0.87611 0.95234 1.67300 1.06008 1.32097 1.23081 1.22619 0.90762 0.94670 0.97186 1.67040 1.41036 0.97339 1.14710 1.17625 0.84162 0.82593 1.05800 1.91581 1.77693 1.45930 1.93875 0.84735 0.91471 0.91614 0.80932 0.85578 0.89419 0.86476 0.81971 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.83 113.37 1.11 1.37 16 2 O -0.31 -8.60 10.37 -93.22 -0.97 -9.57 16 3 C 0.07 2.13 6.71 22.60 0.15 2.28 16 4 C -0.11 -3.65 8.64 22.76 0.20 -3.45 16 5 C -0.04 -1.66 5.89 -19.96 -0.12 -1.77 16 6 C 0.13 5.89 6.73 41.85 0.28 6.17 16 7 C -0.21 -10.03 8.15 23.07 0.19 -9.84 16 8 C 0.10 4.77 5.61 -21.12 -0.12 4.65 16 9 C -0.48 -23.61 9.12 23.52 0.21 -23.40 16 10 H 0.09 4.05 7.90 -2.91 -0.02 4.02 16 11 C 0.04 1.91 5.20 85.29 0.44 2.35 16 12 N -0.81 -38.61 10.91 21.84 0.24 -38.37 16 13 Si 0.98 34.91 29.59 68.60 2.03 36.94 16 14 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 15 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 16 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 17 C -0.28 -12.70 9.90 22.86 0.23 -12.48 16 18 C 0.11 4.36 11.15 84.56 0.94 5.30 16 19 N -0.57 -24.46 9.47 -185.37 -1.76 -26.22 16 20 C 0.11 4.10 10.58 84.95 0.90 5.00 16 21 N -0.49 -18.63 10.35 -195.65 -2.03 -20.65 16 22 C 0.25 9.04 8.42 84.87 0.71 9.75 16 23 F -0.11 -3.85 17.13 44.97 0.77 -3.08 16 24 H 0.13 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.15 7.69 -2.39 -0.02 1.13 16 26 H 0.07 1.14 7.69 -2.38 -0.02 1.12 16 27 H 0.17 5.26 6.00 -2.91 -0.02 5.24 16 28 H 0.13 6.21 4.33 -2.91 -0.01 6.20 16 29 H 0.29 12.65 8.29 -92.71 -0.77 11.89 16 30 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 31 H 0.16 5.24 8.06 -2.91 -0.02 5.22 16 32 H 0.17 6.76 6.18 -2.91 -0.02 6.74 16 Total: -1.00 -56.78 287.43 4.61 -52.17 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 1.18 Total: 22.85 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: 5.14 Total: -14.07 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -3.54 Total: -85.24 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -0.97 Total: -9.57 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.77 Total: -3.08 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -56.78 4.61 -52.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245073768.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.102 kcal (2) G-P(sol) polarization free energy of solvation -56.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds