Wall clock time and date at job start Mon Mar 30 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.35897 * 117.00093 * 180.02562 * 3 2 1 5 5 C 1.38751 * 120.05772 * 0.02562 * 4 3 2 6 6 C 1.38120 * 119.94502 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05437 * 359.97234 * 6 5 4 8 8 C 1.50703 * 119.94187 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47320 * 89.99723 * 8 7 6 10 10 H 1.08004 * 119.99914 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00129 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00031 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 119.99869 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47437 * 89.99730 * 13 11 9 15 15 H 1.48498 * 109.47095 * 209.99711 * 13 11 9 16 16 H 1.48506 * 109.47184 * 329.99426 * 13 11 9 17 17 C 1.38239 * 120.11181 * 0.04570 * 7 6 5 18 18 C 1.38162 * 120.05707 * 359.68360 * 17 7 6 19 19 C 1.50700 * 120.03025 * 180.29546 * 18 17 7 20 20 F 1.39899 * 109.46785 * 0.27609 * 19 18 17 21 21 F 1.39904 * 109.47218 * 120.27467 * 19 18 17 22 22 F 1.39897 * 109.47121 * 240.27474 * 19 18 17 23 23 H 1.08992 * 109.47303 * 59.99596 * 1 2 3 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99892 * 1 2 3 26 26 H 1.09001 * 109.47289 * 239.99833 * 2 1 3 27 27 H 1.09004 * 109.47261 * 120.00089 * 2 1 3 28 28 H 1.08004 * 120.02556 * 0.02562 * 5 4 3 29 29 H 1.08001 * 119.97304 * 179.97438 * 6 5 4 30 30 H 1.08994 * 109.47007 * 210.00230 * 8 7 6 31 31 H 1.09008 * 109.47169 * 329.99718 * 8 7 6 32 32 H 0.96998 * 119.99977 * 180.02562 * 12 11 9 33 33 H 1.08005 * 119.96939 * 179.97438 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6095 -0.0016 7 6 6.0961 1.8879 -0.0012 8 6 7.5902 2.0854 -0.0018 9 6 8.0876 2.1519 -1.4227 10 1 7.3913 2.0608 -2.2434 11 6 9.4313 2.3302 -1.6752 12 7 9.8654 2.3877 -2.9152 13 14 10.6353 2.4885 -0.2559 14 1 11.1382 1.1425 0.1192 15 1 11.7756 3.3460 -0.6674 16 1 9.9492 3.1029 0.9091 17 6 5.2551 2.9850 0.0003 18 6 3.8850 2.8066 -0.0054 19 6 2.9687 4.0031 -0.0105 20 9 3.7324 5.1752 -0.0149 21 9 2.1621 3.9678 -1.1531 22 9 2.1611 3.9769 1.1315 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7886 -0.5728 -0.0024 29 1 6.2280 -0.2460 -0.0020 30 1 7.8340 3.0149 0.5125 31 1 8.0673 1.2503 0.5115 32 1 10.8107 2.5128 -3.0929 33 1 5.6694 3.9824 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250054566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:20 Heat of formation + Delta-G solvation = -193.610747 kcal Electronic energy + Delta-G solvation = -21233.980325 eV Core-core repulsion = 17423.013946 eV Total energy + Delta-G solvation = -3810.966379 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -51.13270 -48.66926 -48.58020 -41.32222 -38.93056 -35.33010 -33.67422 -32.60710 -32.12602 -29.05534 -26.92142 -25.25096 -24.42062 -22.64262 -21.92049 -19.65136 -19.48743 -19.39741 -18.95091 -18.31803 -17.09309 -16.95038 -16.41790 -15.62531 -15.50881 -15.46896 -15.39309 -15.04624 -14.80456 -14.77606 -14.61963 -14.44425 -14.37773 -13.74847 -13.53002 -13.47331 -13.29508 -12.90449 -12.70586 -12.36393 -12.06547 -11.84508 -11.78022 -11.63564 -11.40719 -10.76654 -10.24216 -9.11688 -8.27658 -6.33320 -0.01981 0.36221 1.39560 1.42348 1.53347 1.68657 2.08605 2.37738 2.53129 2.75868 3.05028 3.07901 3.45686 3.79266 3.93250 4.08356 4.17019 4.20785 4.35607 4.39257 4.43810 4.67030 4.86673 4.96122 5.02407 5.09484 5.11790 5.22611 5.26859 5.54493 5.67792 5.78252 6.24511 6.29964 6.73572 7.30604 8.88798 Molecular weight = 274.09amu Principal moments of inertia in cm(-1) A = 0.022374 B = 0.005281 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.175687 B = 5300.770452 C = 6005.501007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.041 3.959 3 O -0.326 6.326 4 C 0.158 3.842 5 C -0.198 4.198 6 C -0.050 4.050 7 C -0.097 4.097 8 C 0.024 3.976 9 C -0.522 4.522 10 H 0.029 0.971 11 C 0.009 3.991 12 N -0.950 5.950 13 Si 0.949 3.051 14 H -0.262 1.262 15 H -0.287 1.287 16 H -0.244 1.244 17 C -0.049 4.049 18 C -0.235 4.235 19 C 0.522 3.478 20 F -0.182 7.182 21 F -0.181 7.181 22 F -0.176 7.176 23 H 0.059 0.941 24 H 0.105 0.895 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.170 0.830 29 H 0.147 0.853 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.564 -5.006 9.744 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.112 3.888 5 C -0.217 4.217 6 C -0.068 4.068 7 C -0.097 4.097 8 C -0.013 4.013 9 C -0.560 4.560 10 H 0.047 0.953 11 C -0.188 4.188 12 N -0.590 5.590 13 Si 0.772 3.228 14 H -0.187 1.187 15 H -0.213 1.213 16 H -0.167 1.167 17 C -0.067 4.067 18 C -0.237 4.237 19 C 0.468 3.532 20 F -0.163 7.163 21 F -0.162 7.162 22 F -0.157 7.157 23 H 0.078 0.922 24 H 0.124 0.876 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.187 0.813 29 H 0.165 0.835 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.630 -4.818 9.641 19.817 hybrid contribution 0.793 0.416 -0.173 0.912 sum -15.837 -4.401 9.469 18.969 Atomic orbital electron populations 1.21808 0.91281 1.04352 1.03072 1.23221 0.97075 0.80042 1.02983 1.86097 1.17501 1.32454 1.87972 1.18494 0.83532 0.92410 0.94400 1.21449 0.93181 0.98769 1.08273 1.21335 0.95005 0.97148 0.93300 1.20069 0.96689 0.93151 0.99805 1.18629 0.88937 0.98111 0.95655 1.21192 0.93052 1.49902 0.91828 0.95299 1.25971 1.00432 0.94044 0.98392 1.70060 1.15830 1.51637 1.21487 0.85673 0.78073 0.79190 0.79854 1.18666 1.21337 1.16713 1.20766 0.90249 1.00475 0.95250 1.19304 0.93922 0.90909 1.19528 1.17978 0.78919 0.82619 0.73677 1.93146 1.75619 1.51265 1.96275 1.93179 1.75048 1.96625 1.51347 1.93177 1.74910 1.96652 1.51006 0.92234 0.87630 0.91855 0.90723 0.90043 0.81262 0.83522 0.94927 0.94037 0.92411 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.04 0.71 5.46 71.98 0.39 1.11 16 3 O -0.33 -8.83 9.05 -92.39 -0.84 -9.67 16 4 C 0.16 4.84 6.57 22.51 0.15 4.99 16 5 C -0.20 -5.44 9.04 22.36 0.20 -5.24 16 6 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 7 C -0.10 -3.80 5.07 -19.85 -0.10 -3.90 16 8 C 0.02 1.07 4.17 29.10 0.12 1.19 16 9 C -0.52 -29.18 9.65 25.60 0.25 -28.93 16 10 H 0.03 1.82 7.98 -2.91 -0.02 1.79 16 11 C 0.01 0.50 5.47 84.66 0.46 0.96 16 12 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 13 Si 0.95 42.41 27.47 68.60 1.88 44.29 16 14 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 17 C -0.05 -1.86 9.08 22.25 0.20 -1.65 16 18 C -0.23 -8.10 5.38 -19.77 -0.11 -8.21 16 19 C 0.52 17.32 2.99 71.24 0.21 17.53 16 20 F -0.18 -6.08 15.97 44.97 0.72 -5.36 16 21 F -0.18 -6.09 16.95 44.97 0.76 -5.33 16 22 F -0.18 -5.56 16.95 44.97 0.76 -4.80 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 27 H 0.08 1.14 7.67 -2.38 -0.02 1.13 16 28 H 0.17 3.24 6.30 -2.91 -0.02 3.23 16 29 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 30 H 0.03 1.43 7.14 -2.39 -0.02 1.41 16 31 H 0.04 1.72 7.51 -2.38 -0.02 1.70 16 32 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.14 5.08 7.16 -2.91 -0.02 5.06 16 Total: -1.00 -66.39 296.16 7.41 -58.98 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: 1.08 Total: 5.05 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 2.74 Total: -24.84 kcal Atomic # 7 Polarization: -58.63 SS G_CDS: 0.30 Total: -58.33 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.84 Total: -9.67 kcal Atomic # 9 Polarization: -17.73 SS G_CDS: 2.24 Total: -15.49 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.88 Total: 44.29 kcal Total: -66.39 7.41 -58.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250054566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.628 kcal (2) G-P(sol) polarization free energy of solvation -66.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds