Wall clock time and date at job start Mon Mar 30 2020 01:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47296 * 2 1 4 4 C 1.40850 * 126.71723 * 124.99512 * 3 2 1 5 5 C 1.36702 * 103.91136 * 179.97438 * 4 3 2 6 6 N 1.38300 * 126.89161 * 180.02562 * 5 4 3 7 7 C 1.39827 * 119.99600 * 176.26225 * 6 5 4 8 8 C 1.38766 * 120.10831 * 353.58205 * 7 6 5 9 9 C 1.38179 * 119.99367 * 179.97438 * 8 7 6 10 10 C 1.38359 * 120.20608 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.21122 * 359.70055 * 10 9 8 12 12 C 1.38730 * 120.00184 * 0.55195 * 11 10 9 13 13 O 1.35781 * 120.09914 * 179.74452 * 12 11 10 14 14 C 1.34804 * 117.00439 * 359.35513 * 13 12 11 15 15 H 1.08002 * 119.99632 * 355.25484 * 14 13 12 16 16 C 1.38626 * 120.00313 * 175.25612 * 14 13 12 17 17 N 1.31572 * 119.99896 * 0.27472 * 16 14 13 18 18 Si 1.86796 * 119.99789 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47590 * 59.99733 * 18 16 14 20 20 H 1.48506 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47321 * 299.99726 * 18 16 14 22 22 O 1.34280 * 106.21315 * 0.26496 * 5 4 3 23 23 N 1.20905 * 111.46361 * 359.52758 * 22 5 4 24 24 H 1.08994 * 109.47350 * 300.00425 * 1 2 3 25 25 H 1.09002 * 109.46801 * 60.00195 * 1 2 3 26 26 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47350 * 239.99575 * 2 1 3 28 28 H 1.09002 * 109.46801 * 119.99805 * 2 1 3 29 29 H 1.07998 * 128.04866 * 359.93128 * 4 3 2 30 30 H 0.97003 * 120.00053 * 356.26093 * 6 5 4 31 31 H 1.08001 * 120.00261 * 0.02562 * 8 7 6 32 32 H 1.08003 * 119.90055 * 179.97438 * 9 8 7 33 33 H 1.08000 * 119.89222 * 179.97438 * 10 9 8 34 34 H 1.08003 * 119.99623 * 180.29986 * 11 10 9 35 35 H 0.97000 * 120.00097 * 359.72851 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9236 1.9988 0.9249 5 6 3.0576 3.2880 0.4905 6 7 3.8336 4.2802 1.0617 7 6 3.9260 5.5343 0.4504 8 6 3.3507 5.7460 -0.7945 9 6 3.4430 6.9864 -1.3963 10 6 4.1084 8.0202 -0.7615 11 6 4.6795 7.8205 0.4807 12 6 4.5966 6.5771 1.0904 13 8 5.1616 6.3772 2.3089 14 6 5.8004 7.4251 2.8667 15 1 5.9119 8.3461 2.3137 16 6 6.3141 7.3205 4.1500 17 7 6.1830 6.1966 4.8215 18 14 7.1987 8.7727 4.9231 19 1 6.2736 9.9319 5.0003 20 1 7.6500 8.4070 6.2898 21 1 8.3763 9.1338 4.0936 22 8 2.2806 3.3993 -0.5990 23 7 1.7276 2.3554 -0.8564 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3916 1.5323 1.7791 30 1 4.3136 4.1060 1.8865 31 1 2.8302 4.9414 -1.2927 32 1 2.9951 7.1494 -2.3654 33 1 4.1779 8.9876 -1.2367 34 1 5.1939 8.6312 0.9751 35 1 5.7233 5.4426 4.4202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212598345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:44 Heat of formation + Delta-G solvation = 58.847837 kcal Electronic energy + Delta-G solvation = -20333.467468 eV Core-core repulsion = 17107.598006 eV Total energy + Delta-G solvation = -3225.869462 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -44.54969 -39.56406 -37.05577 -35.60959 -35.37164 -32.41564 -31.57935 -30.28285 -29.34200 -27.88130 -25.14479 -24.44114 -23.08210 -22.18067 -21.49544 -19.84501 -18.64146 -17.61479 -17.47448 -17.34303 -16.30962 -15.49870 -14.81711 -14.39001 -14.31817 -14.20910 -14.03715 -13.84553 -13.36764 -13.03884 -13.00000 -12.55824 -12.41390 -11.63966 -11.59500 -11.31162 -11.16101 -10.90816 -10.85559 -10.71546 -10.56146 -10.35886 -9.84276 -9.60718 -8.93293 -8.78052 -7.81643 -6.88640 -6.85916 -4.16732 1.59031 2.10589 2.24932 2.62277 2.68764 3.18350 3.22472 3.39149 3.87873 4.02137 4.31486 4.42557 4.77184 4.85881 5.04486 5.12725 5.23192 5.32020 5.43353 5.60032 5.65405 5.71252 5.74703 5.82788 5.94922 6.03500 6.07204 6.30732 6.36525 6.55517 6.66360 6.91579 7.19568 7.23838 7.44206 7.59707 7.64384 8.26640 8.63721 8.78583 9.42726 10.55337 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.022320 B = 0.004570 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.187457 B = 6125.935310 C = 7287.256154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.043 4.043 3 C 0.057 3.943 4 C -0.324 4.324 5 C 0.259 3.741 6 N -0.609 5.609 7 C 0.081 3.919 8 C -0.126 4.126 9 C -0.174 4.174 10 C -0.095 4.095 11 C -0.205 4.205 12 C 0.128 3.872 13 O -0.207 6.207 14 C -0.469 4.469 15 H 0.085 0.915 16 C 0.012 3.988 17 N -0.879 5.879 18 Si 1.095 2.905 19 H -0.281 1.281 20 H -0.273 1.273 21 H -0.281 1.281 22 O 0.065 5.935 23 N -0.391 5.391 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.166 0.834 30 H 0.437 0.563 31 H 0.136 0.864 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -6.049 -7.460 11.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.102 4.102 4 C -0.354 4.354 5 C 0.094 3.906 6 N -0.241 5.241 7 C -0.014 4.014 8 C -0.147 4.147 9 C -0.194 4.194 10 C -0.115 4.115 11 C -0.225 4.225 12 C 0.074 3.926 13 O -0.112 6.112 14 C -0.545 4.545 15 H 0.103 0.897 16 C -0.193 4.193 17 N -0.511 5.511 18 Si 0.919 3.081 19 H -0.207 1.207 20 H -0.198 1.198 21 H -0.207 1.207 22 O 0.016 5.984 23 N -0.109 5.109 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.102 0.898 29 H 0.184 0.816 30 H 0.279 0.721 31 H 0.153 0.847 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.775 -5.571 -7.050 10.681 hybrid contribution -0.095 -0.530 -0.411 0.678 sum -5.870 -6.101 -7.461 11.285 Atomic orbital electron populations 1.21721 0.94326 1.01796 1.02663 1.19912 0.96334 0.88487 1.03353 1.22945 0.97197 0.97507 0.92561 1.21537 1.12828 0.92541 1.08470 1.20834 0.91167 0.89895 0.88713 1.41043 1.47656 1.08063 1.27300 1.17078 1.05904 0.83710 0.94724 1.20871 1.02074 0.98664 0.93114 1.20482 1.05128 0.92993 1.00749 1.20799 0.97660 0.98295 0.94720 1.21020 1.07013 0.97222 0.97227 1.18676 0.94434 0.92000 0.87463 1.83544 1.61902 1.39115 1.26646 1.22169 1.37275 0.93402 1.01622 0.89709 1.26534 0.97524 1.03668 0.91613 1.70621 1.37848 1.03174 1.39470 0.83107 0.75891 0.72409 0.76703 1.20679 1.19756 1.20675 1.84990 1.46428 1.29628 1.37394 1.73755 1.20029 0.93244 1.23904 0.92495 0.92114 0.92085 0.90149 0.89762 0.81608 0.72142 0.84702 0.86807 0.86964 0.84779 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.88 37.16 0.37 -1.07 16 2 C -0.04 -0.45 6.53 -27.88 -0.18 -0.63 16 3 C 0.06 0.83 6.57 -82.22 -0.54 0.29 16 4 C -0.32 -4.90 11.15 -39.15 -0.44 -5.34 16 5 C 0.26 4.49 7.85 -15.19 -0.12 4.37 16 6 N -0.61 -11.40 5.53 -10.22 -0.06 -11.46 16 7 C 0.08 1.67 6.64 -83.53 -0.55 1.12 16 8 C -0.13 -2.35 9.17 -39.41 -0.36 -2.71 16 9 C -0.17 -3.01 10.04 -39.56 -0.40 -3.40 16 10 C -0.10 -1.70 10.04 -39.56 -0.40 -2.10 16 11 C -0.20 -4.29 9.16 -39.42 -0.36 -4.65 16 12 C 0.13 2.94 6.67 -38.92 -0.26 2.68 16 13 O -0.21 -5.36 8.42 0.03 0.00 -5.36 16 14 C -0.47 -12.46 9.48 30.88 0.29 -12.17 16 15 H 0.09 2.12 5.21 -52.49 -0.27 1.85 16 16 C 0.01 0.32 5.49 -17.52 -0.10 0.22 16 17 N -0.88 -24.87 13.70 55.48 0.76 -24.11 16 18 Si 1.10 22.70 29.92 -169.99 -5.09 17.62 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 O 0.07 1.15 7.72 16.54 0.13 1.28 16 23 N -0.39 -6.52 12.05 33.49 0.40 -6.12 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.74 8.13 -51.93 -0.42 0.31 16 29 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.44 8.10 8.21 -40.82 -0.34 7.76 16 31 H 0.14 2.40 4.69 -52.72 -0.25 2.16 16 32 H 0.11 1.64 8.06 -52.48 -0.42 1.21 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.13 2.80 5.63 -52.48 -0.30 2.51 16 35 H 0.28 7.95 7.97 -40.82 -0.33 7.62 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -29.31 303.90 -5.97 -35.28 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.65 Total: 11.69 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -3.04 Total: -23.39 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 1.11 Total: -41.68 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: 0.13 Total: -4.08 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.09 Total: 17.62 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.31 -5.97 -35.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.124 kcal (2) G-P(sol) polarization free energy of solvation -29.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds