Wall clock time and date at job start Mon Mar 30 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50697 * 109.47296 * 2 1 4 4 C 1.40850 * 126.71723 * 124.99512 * 3 2 1 5 5 C 1.36702 * 103.91136 * 179.97438 * 4 3 2 6 6 N 1.38300 * 126.89161 * 180.02562 * 5 4 3 7 7 C 1.39827 * 119.99600 * 176.26225 * 6 5 4 8 8 C 1.38766 * 120.10831 * 353.58205 * 7 6 5 9 9 C 1.38179 * 119.99367 * 179.97438 * 8 7 6 10 10 C 1.38359 * 120.20608 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.21122 * 359.70055 * 10 9 8 12 12 C 1.38730 * 120.00184 * 0.55195 * 11 10 9 13 13 O 1.35781 * 120.09914 * 179.74452 * 12 11 10 14 14 C 1.34804 * 117.00439 * 359.35513 * 13 12 11 15 15 H 1.08002 * 119.99632 * 355.25484 * 14 13 12 16 16 C 1.38626 * 120.00313 * 175.25612 * 14 13 12 17 17 N 1.31572 * 119.99896 * 0.27472 * 16 14 13 18 18 Si 1.86796 * 119.99789 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47590 * 59.99733 * 18 16 14 20 20 H 1.48506 * 109.47096 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47321 * 299.99726 * 18 16 14 22 22 O 1.34280 * 106.21315 * 0.26496 * 5 4 3 23 23 N 1.20905 * 111.46361 * 359.52758 * 22 5 4 24 24 H 1.08994 * 109.47350 * 300.00425 * 1 2 3 25 25 H 1.09002 * 109.46801 * 60.00195 * 1 2 3 26 26 H 1.08997 * 109.47216 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47350 * 239.99575 * 2 1 3 28 28 H 1.09002 * 109.46801 * 119.99805 * 2 1 3 29 29 H 1.07998 * 128.04866 * 359.93128 * 4 3 2 30 30 H 0.97003 * 120.00053 * 356.26093 * 6 5 4 31 31 H 1.08001 * 120.00261 * 0.02562 * 8 7 6 32 32 H 1.08003 * 119.90055 * 179.97438 * 9 8 7 33 33 H 1.08000 * 119.89222 * 179.97438 * 10 9 8 34 34 H 1.08003 * 119.99623 * 180.29986 * 11 10 9 35 35 H 0.97000 * 120.00097 * 359.72851 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9236 1.9988 0.9249 5 6 3.0576 3.2880 0.4905 6 7 3.8336 4.2802 1.0617 7 6 3.9260 5.5343 0.4504 8 6 3.3507 5.7460 -0.7945 9 6 3.4430 6.9864 -1.3963 10 6 4.1084 8.0202 -0.7615 11 6 4.6795 7.8205 0.4807 12 6 4.5966 6.5771 1.0904 13 8 5.1616 6.3772 2.3089 14 6 5.8004 7.4251 2.8667 15 1 5.9119 8.3461 2.3137 16 6 6.3141 7.3205 4.1500 17 7 6.1830 6.1966 4.8215 18 14 7.1987 8.7727 4.9231 19 1 6.2736 9.9319 5.0003 20 1 7.6500 8.4070 6.2898 21 1 8.3763 9.1338 4.0936 22 8 2.2806 3.3993 -0.5990 23 7 1.7276 2.3554 -0.8564 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.3916 1.5323 1.7791 30 1 4.3136 4.1060 1.8865 31 1 2.8302 4.9414 -1.2927 32 1 2.9951 7.1494 -2.3654 33 1 4.1779 8.9876 -1.2367 34 1 5.1939 8.6312 0.9751 35 1 5.7233 5.4426 4.4202 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212598345.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:43 Heat of formation + Delta-G solvation = 41.048578 kcal Electronic energy + Delta-G solvation = -20334.239302 eV Core-core repulsion = 17107.598006 eV Total energy + Delta-G solvation = -3226.641296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.82672 -41.19104 -38.72294 -37.07146 -36.44834 -34.32346 -32.69835 -31.58719 -30.90414 -29.36586 -27.02611 -25.42817 -24.43392 -23.63225 -23.05326 -21.11178 -20.39598 -19.09471 -18.92944 -18.67280 -17.87454 -16.87857 -16.51889 -15.89512 -15.72180 -15.50640 -15.36025 -15.10031 -14.80418 -14.61242 -14.31541 -14.01185 -13.46053 -12.96861 -12.70543 -12.61845 -12.47304 -12.38999 -12.35710 -12.25290 -11.93922 -11.79865 -11.39296 -10.99970 -10.76422 -10.24121 -9.42013 -8.91661 -8.39904 -6.20247 0.15523 0.53679 0.87033 1.28570 1.38683 1.51300 1.62354 1.79616 2.32995 2.53325 2.81671 3.09711 3.16901 3.22939 3.75541 3.95921 4.14693 4.21207 4.30470 4.33199 4.37470 4.51763 4.53780 4.66655 4.79568 4.99777 5.02923 5.07039 5.13138 5.16640 5.36592 5.41141 5.46043 5.66366 5.84550 6.05719 6.15290 6.28614 6.86024 7.32967 7.57737 8.53339 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.022320 B = 0.004570 C = 0.003841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.187457 B = 6125.935310 C = 7287.256154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.063 3.937 4 C -0.314 4.314 5 C 0.238 3.762 6 N -0.617 5.617 7 C 0.080 3.920 8 C -0.136 4.136 9 C -0.150 4.150 10 C -0.095 4.095 11 C -0.212 4.212 12 C 0.088 3.912 13 O -0.244 6.244 14 C -0.484 4.484 15 H 0.092 0.908 16 C -0.039 4.039 17 N -0.916 5.916 18 Si 1.142 2.858 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.262 1.262 22 O 0.051 5.949 23 N -0.406 5.406 24 H 0.048 0.952 25 H 0.046 0.954 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.188 0.812 30 H 0.434 0.566 31 H 0.146 0.854 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.128 0.872 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 -6.120 -9.294 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 C -0.096 4.096 4 C -0.343 4.343 5 C 0.074 3.926 6 N -0.248 5.248 7 C -0.016 4.016 8 C -0.157 4.157 9 C -0.169 4.169 10 C -0.114 4.114 11 C -0.232 4.232 12 C 0.037 3.963 13 O -0.152 6.152 14 C -0.559 4.559 15 H 0.110 0.890 16 C -0.236 4.236 17 N -0.550 5.550 18 Si 0.958 3.042 19 H -0.187 1.187 20 H -0.201 1.201 21 H -0.186 1.186 22 O 0.003 5.997 23 N -0.127 5.127 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.205 0.795 30 H 0.274 0.726 31 H 0.163 0.837 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.146 0.854 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.652 -5.644 -8.948 12.497 hybrid contribution -0.035 -0.640 -0.150 0.658 sum -6.687 -6.284 -9.097 12.922 Atomic orbital electron populations 1.21708 0.93682 1.03273 1.01563 1.20166 0.96810 0.86019 1.05237 1.23637 0.95951 0.98870 0.91190 1.21988 1.11963 0.91689 1.08654 1.21053 0.91839 0.90304 0.89422 1.40996 1.48364 1.08071 1.27408 1.17371 1.05084 0.83957 0.95188 1.21178 1.02083 0.99949 0.92535 1.21037 1.02550 0.91714 1.01625 1.21191 0.96532 1.00276 0.93386 1.21236 1.07074 0.96352 0.98524 1.19160 0.96166 0.93753 0.87260 1.83526 1.63976 1.39290 1.28363 1.22529 1.37378 0.93969 1.02061 0.89020 1.28188 0.97838 1.05321 0.92276 1.70737 1.40473 1.03825 1.40010 0.82597 0.75813 0.69948 0.75831 1.18677 1.20128 1.18624 1.84944 1.46798 1.30345 1.37620 1.73759 1.20582 0.93552 1.24806 0.93314 0.93488 0.89357 0.88649 0.87452 0.79519 0.72579 0.83677 0.82711 0.83039 0.85394 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.88 71.98 0.71 -1.76 16 2 C -0.04 -0.81 6.53 29.85 0.19 -0.62 16 3 C 0.06 1.72 6.57 43.41 0.29 2.01 16 4 C -0.31 -9.18 11.15 22.55 0.25 -8.93 16 5 C 0.24 8.24 7.85 83.31 0.65 8.89 16 6 N -0.62 -23.85 5.53 -296.58 -1.64 -25.49 16 7 C 0.08 3.34 6.64 38.30 0.25 3.59 16 8 C -0.14 -4.90 9.17 22.38 0.21 -4.70 16 9 C -0.15 -4.70 10.04 22.28 0.22 -4.48 16 10 C -0.09 -3.12 10.04 22.28 0.22 -2.89 16 11 C -0.21 -8.83 9.16 22.37 0.20 -8.62 16 12 C 0.09 4.14 6.67 22.70 0.15 4.29 16 13 O -0.24 -13.32 8.42 -22.82 -0.19 -13.51 16 14 C -0.48 -26.71 9.48 67.91 0.64 -26.06 16 15 H 0.09 4.72 5.21 -2.91 -0.02 4.71 16 16 C -0.04 -2.16 5.49 84.82 0.47 -1.69 16 17 N -0.92 -54.34 13.70 21.61 0.30 -54.05 16 18 Si 1.14 46.27 29.92 68.60 2.05 48.32 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 O 0.05 1.76 7.72 69.36 0.54 2.29 16 23 N -0.41 -13.11 12.05 -48.92 -0.59 -13.70 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.11 1.49 8.13 -2.39 -0.02 1.48 16 29 H 0.19 4.53 8.06 -2.91 -0.02 4.51 16 30 H 0.43 17.11 8.21 -92.71 -0.76 16.34 16 31 H 0.15 4.97 4.69 -6.67 -0.03 4.94 16 32 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 33 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.13 5.39 5.63 -2.91 -0.02 5.37 16 35 H 0.26 15.93 7.97 -92.71 -0.74 15.19 16 Total: -1.00 -66.64 303.90 5.32 -61.32 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: 0.39 Total: 35.78 kcal Atomic # 6 Polarization: -45.44 SS G_CDS: 4.47 Total: -40.97 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -1.93 Total: -93.23 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.34 Total: -11.22 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.05 Total: 48.32 kcal Total: -66.64 5.32 -61.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598345.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.371 kcal (2) G-P(sol) polarization free energy of solvation -66.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds