Wall clock time and date at job start Mon Mar 30 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.34330 * 2 1 4 4 C 1.53254 * 109.40325 * 240.20408 * 2 1 3 5 5 H 1.09002 * 109.63293 * 58.16680 * 4 2 1 6 6 C 1.53005 * 109.79057 * 297.67429 * 4 2 1 7 7 S 1.81892 * 108.50377 * 177.87667 * 4 2 1 8 8 O 1.42103 * 109.46953 * 295.45740 * 7 4 2 9 9 C 1.81896 * 101.91779 * 51.30403 * 7 4 2 10 10 C 1.53250 * 108.50352 * 308.69351 * 9 7 4 11 11 N 1.46468 * 109.40857 * 119.80459 * 2 1 3 12 12 C 1.46899 * 110.99852 * 317.88376 * 11 2 1 13 13 C 1.50698 * 109.46987 * 300.06240 * 12 11 2 14 14 O 1.21293 * 120.00006 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99538 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.99773 * 179.72591 * 15 13 12 17 17 H 1.08002 * 119.99671 * 0.27660 * 16 15 13 18 18 C 1.38950 * 120.00030 * 180.27703 * 16 15 13 19 19 N 1.31413 * 119.99930 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99918 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47112 * 89.99702 * 20 18 16 22 22 H 1.48498 * 109.47011 * 209.99970 * 20 18 16 23 23 H 1.48494 * 109.47201 * 329.99943 * 20 18 16 24 24 H 1.09010 * 109.46705 * 300.19344 * 1 2 3 25 25 H 1.08994 * 109.47688 * 60.19335 * 1 2 3 26 26 H 1.09000 * 109.47267 * 180.19753 * 1 2 3 27 27 H 1.08993 * 109.47201 * 300.88770 * 6 4 2 28 28 H 1.09004 * 109.46968 * 60.88974 * 6 4 2 29 29 H 1.09006 * 109.46660 * 180.88744 * 6 4 2 30 30 H 1.09001 * 109.63142 * 188.98775 * 9 7 4 31 31 H 1.09000 * 109.79634 * 68.49363 * 9 7 4 32 32 H 1.08998 * 109.40572 * 301.88292 * 10 9 7 33 33 H 1.09001 * 109.34530 * 182.07918 * 10 9 7 34 34 H 1.09003 * 109.46477 * 180.02562 * 12 11 2 35 35 H 1.08993 * 109.47002 * 60.07056 * 12 11 2 36 36 H 0.97001 * 120.00485 * 0.02562 * 15 13 12 37 37 H 0.96999 * 119.99993 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8910 1.0284 0.0000 4 6 2.0391 -0.7183 -1.2544 5 1 1.6500 -0.2224 -2.1437 6 6 1.5805 -2.1779 -1.2376 7 16 3.8567 -0.6488 -1.2617 8 8 4.2785 0.7029 -1.3810 9 6 4.2629 -1.2664 0.4003 10 6 3.4476 -0.4726 1.4268 11 7 2.0167 -0.6866 1.1987 12 6 1.2321 -0.3034 2.3800 13 6 1.3424 1.1841 2.5953 14 8 2.0086 1.8586 1.8387 15 7 0.6999 1.7649 3.6279 16 6 0.8047 3.1174 3.8271 17 1 1.3986 3.7178 3.1539 18 6 0.1470 3.7154 4.8950 19 7 0.2479 5.0116 5.0862 20 14 -0.8796 2.6766 6.0597 21 1 -0.0268 2.1956 7.1762 22 1 -1.9920 3.4960 6.6039 23 1 -1.4359 1.5123 5.3248 24 1 -0.3633 0.5169 0.8883 25 1 -0.3634 0.5108 -0.8916 26 1 -0.3634 -1.0276 0.0035 27 1 1.9651 -2.6693 -0.3440 28 1 0.4912 -2.2165 -1.2332 29 1 1.9586 -2.6877 -2.1239 30 1 5.3270 -1.1287 0.5922 31 1 4.0117 -2.3247 0.4724 32 1 3.6754 0.5886 1.3277 33 1 3.7081 -0.8068 2.4311 34 1 1.6149 -0.8272 3.2559 35 1 0.1872 -0.5717 2.2248 36 1 0.1668 1.2256 4.2327 37 1 -0.2116 5.4291 5.8315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076822166.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:19 Heat of formation + Delta-G solvation = -87.937385 kcal Electronic energy + Delta-G solvation = -20508.429377 eV Core-core repulsion = 17411.638781 eV Total energy + Delta-G solvation = -3096.790595 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 274.114 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30708 -38.83569 -36.80525 -36.09189 -34.54791 -33.90909 -32.60409 -29.69468 -28.36158 -26.39714 -24.80679 -23.69585 -21.55337 -21.03637 -19.93352 -18.52806 -17.82482 -17.21481 -16.99422 -16.80772 -16.48441 -15.94534 -15.62475 -15.50049 -14.90219 -14.79446 -14.37996 -14.24685 -13.79992 -13.40875 -13.39956 -13.15618 -12.96900 -12.73540 -12.53966 -12.48984 -12.34970 -12.20743 -12.06466 -11.98629 -11.69752 -11.47288 -11.13418 -10.65638 -10.33918 -9.35622 -9.06658 -8.51782 -6.14063 0.81265 1.22559 1.28441 1.38349 1.67011 1.81849 2.14953 2.67606 2.84968 2.98769 3.04370 3.71165 3.85680 4.03201 4.09277 4.23918 4.24671 4.41599 4.50410 4.53598 4.59074 4.65237 4.79509 4.86002 5.06240 5.09142 5.17937 5.31011 5.39477 5.42466 5.70262 5.73144 5.84534 5.92985 6.47025 6.77144 7.26828 7.85417 8.66493 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.032265 B = 0.005221 C = 0.004994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.600824 B = 5361.840686 C = 5605.017181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.069 3.931 3 H 0.013 0.987 4 C -0.387 4.387 5 H 0.109 0.891 6 C -0.111 4.111 7 S 1.281 4.719 8 O -0.939 6.939 9 C -0.419 4.419 10 C 0.042 3.958 11 N -0.485 5.485 12 C 0.044 3.956 13 C 0.412 3.588 14 O -0.622 6.622 15 N -0.585 5.585 16 C -0.334 4.334 17 H 0.043 0.957 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.971 3.029 21 H -0.254 1.254 22 H -0.272 1.272 23 H -0.228 1.228 24 H 0.033 0.967 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.174 0.826 32 H 0.002 0.998 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.391 0.609 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -25.892 -9.181 27.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 H 0.031 0.969 4 C -0.506 4.506 5 H 0.127 0.873 6 C -0.169 4.169 7 S 1.483 4.517 8 O -0.934 6.934 9 C -0.558 4.558 10 C -0.087 4.087 11 N -0.208 5.208 12 C -0.088 4.088 13 C 0.200 3.800 14 O -0.509 6.509 15 N -0.227 5.227 16 C -0.464 4.464 17 H 0.061 0.939 18 C -0.215 4.215 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.179 1.179 22 H -0.197 1.197 23 H -0.151 1.151 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.117 0.883 30 H 0.133 0.867 31 H 0.192 0.808 32 H 0.021 0.979 33 H 0.105 0.895 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.227 0.773 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.243 -25.417 -10.415 27.496 hybrid contribution -1.101 3.441 2.624 4.465 sum 0.143 -21.975 -7.791 23.316 Atomic orbital electron populations 1.21949 0.93153 1.03734 1.00914 1.21641 0.97464 0.94792 0.90105 0.96893 1.27476 1.18038 1.05250 0.99829 0.87255 1.21486 1.02363 0.88371 1.04701 1.68864 0.87460 0.98228 0.97138 1.93023 1.77108 1.40859 1.82450 1.27596 1.05045 1.09943 1.13196 1.22042 0.88258 0.97142 1.01255 1.61895 1.02381 1.54765 1.01737 1.22458 1.02720 0.87832 0.95758 1.22460 0.82483 0.93015 0.82076 1.90578 1.45336 1.67132 1.47817 1.42182 1.45915 1.07202 1.27390 1.18956 1.30992 0.83629 1.12809 0.93857 1.26247 0.98726 0.97335 0.99148 1.69824 1.44070 1.11896 1.31710 0.85294 0.78261 0.79048 0.78448 1.17855 1.19723 1.15092 0.94811 0.92654 0.87802 0.89835 0.91620 0.88350 0.86653 0.80810 0.97933 0.89501 0.85543 0.85151 0.77289 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 7.92 71.98 0.57 -3.42 16 2 C 0.07 2.27 1.50 45.08 0.07 2.34 16 3 H 0.01 0.63 5.78 -2.39 -0.01 0.62 16 4 C -0.39 -8.65 2.95 30.68 0.09 -8.56 16 5 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 6 C -0.11 -1.27 8.67 71.98 0.62 -0.65 16 7 S 1.28 29.41 13.22 -56.49 -0.75 28.66 16 8 O -0.94 -39.78 18.14 -148.98 -2.70 -42.49 16 9 C -0.42 -8.61 6.32 72.07 0.46 -8.15 16 10 C 0.04 1.34 4.83 86.47 0.42 1.76 16 11 N -0.49 -14.11 3.68 -876.76 -3.23 -17.34 16 12 C 0.04 1.35 5.24 85.56 0.45 1.80 16 13 C 0.41 19.29 6.31 87.66 0.55 19.85 16 14 O -0.62 -36.63 11.58 -3.07 -0.04 -36.66 16 15 N -0.59 -28.62 5.09 -306.98 -1.56 -30.19 16 16 C -0.33 -20.52 10.16 84.04 0.85 -19.67 16 17 H 0.04 3.22 7.39 -2.91 -0.02 3.20 16 18 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 19 N -0.93 -58.30 13.96 21.66 0.30 -57.99 16 20 Si 0.97 39.48 27.74 68.60 1.90 41.38 16 21 H -0.25 -9.73 7.11 99.48 0.71 -9.03 16 22 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 24 H 0.03 1.12 5.64 -2.38 -0.01 1.11 16 25 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.10 2.10 6.55 -2.39 -0.02 2.09 16 27 H 0.08 0.84 6.72 -2.39 -0.02 0.83 16 28 H 0.06 0.76 6.57 -2.39 -0.02 0.74 16 29 H 0.10 0.41 8.14 -2.38 -0.02 0.40 16 30 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.17 1.80 7.58 -2.39 -0.02 1.78 16 32 H 0.00 0.10 6.18 -2.39 -0.01 0.09 16 33 H 0.09 2.50 7.82 -2.39 -0.02 2.49 16 34 H 0.13 3.08 7.93 -2.39 -0.02 3.06 16 35 H 0.13 3.27 6.23 -2.39 -0.01 3.26 16 36 H 0.39 15.60 5.76 -92.71 -0.53 15.06 16 37 H 0.28 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -99.02 294.59 -1.02 -100.04 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: 0.50 Total: 29.73 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.55 Total: -15.15 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -4.49 Total: -105.52 kcal Atomic # 8 Polarization: -76.41 SS G_CDS: -2.74 Total: -79.15 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.90 Total: 41.38 kcal Atomic # 16 Polarization: 29.41 SS G_CDS: -0.75 Total: 28.66 kcal Total: -99.02 -1.02 -100.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076822166.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.102 kcal (2) G-P(sol) polarization free energy of solvation -99.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds