Wall clock time and date at job start Mon Mar 30 2020 01:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47557 * 209.52410 * 3 2 1 5 5 C 1.36004 * 117.00364 * 179.97438 * 4 3 2 6 6 C 1.38508 * 120.08172 * 359.97438 * 5 4 3 7 7 C 1.38285 * 120.01969 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.17880 * 0.02562 * 7 6 5 9 9 C 1.38217 * 120.16301 * 359.97438 * 8 7 6 10 10 C 1.38729 * 119.97977 * 0.02562 * 9 8 7 11 11 N 1.39959 * 120.09002 * 179.97438 * 10 9 8 12 12 C 1.46504 * 120.00090 * 0.02562 * 11 10 9 13 13 C 1.50699 * 109.47213 * 180.02562 * 12 11 10 14 14 O 1.21295 * 119.99813 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00231 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00245 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99684 * 359.97438 * 16 15 13 18 18 C 1.38944 * 119.99672 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00622 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99625 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47315 * 89.99974 * 20 18 16 22 22 H 1.48511 * 109.46886 * 210.00086 * 20 18 16 23 23 H 1.48498 * 109.47332 * 329.99737 * 20 18 16 24 24 H 4.38456 * 5.44491 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47220 * 89.52231 * 3 2 1 26 26 H 1.09010 * 109.47261 * 329.52333 * 3 2 1 27 27 H 1.08007 * 119.98777 * 0.03715 * 6 5 4 28 28 H 1.07997 * 119.90476 * 180.27859 * 7 6 5 29 29 H 1.07994 * 119.91483 * 179.97438 * 8 7 6 30 30 H 1.07998 * 120.01004 * 180.02562 * 9 8 7 31 31 H 0.96998 * 120.00271 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.46734 * 299.99685 * 12 11 10 33 33 H 1.08996 * 109.46988 * 59.99833 * 12 11 10 34 34 H 0.97003 * 119.99913 * 359.97438 * 15 13 12 35 35 H 0.97007 * 120.00473 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1219 1.1732 0.6639 5 6 4.4701 1.3286 0.7522 6 6 5.3158 0.3737 0.2124 7 6 6.6865 0.5327 0.3034 8 6 7.2170 1.6434 0.9329 9 6 6.3800 2.6009 1.4742 10 6 5.0039 2.4481 1.3867 11 7 4.1542 3.4160 1.9345 12 6 4.7177 4.5927 2.6008 13 6 3.5994 5.4716 3.0989 14 8 2.4452 5.1471 2.9148 15 7 3.8816 6.6186 3.7478 16 6 2.8642 7.4184 4.2004 17 1 1.8366 7.1295 4.0366 18 6 3.1553 8.6006 4.8699 19 7 4.4057 8.9524 5.0688 20 14 1.7691 9.6900 5.4872 21 1 1.4020 9.2887 6.8691 22 1 2.2144 11.1068 5.4849 23 1 0.5888 9.5407 4.5984 24 1 -1.0502 -0.0004 0.0000 25 1 3.0093 -0.0077 -1.0276 26 1 3.0097 -0.8849 0.5213 27 1 4.9046 -0.4953 -0.2799 28 1 7.3442 -0.2108 -0.1221 29 1 8.2881 1.7631 1.0019 30 1 6.7971 3.4677 1.9650 31 1 3.1923 3.3080 1.8723 32 1 5.3315 4.2740 3.4433 33 1 5.3319 5.1510 1.8944 34 1 4.8046 6.8783 3.8947 35 1 4.6089 9.7780 5.5359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184627809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:08 Heat of formation + Delta-G solvation = 13.628581 kcal Electronic energy + Delta-G solvation = -19633.123552 eV Core-core repulsion = 16405.293236 eV Total energy + Delta-G solvation = -3227.830316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19046 -38.45355 -37.48130 -34.99984 -33.92270 -33.50226 -31.36814 -29.98739 -29.71942 -27.50101 -26.55143 -24.41327 -22.22635 -21.58343 -19.39678 -18.60372 -18.30370 -17.98480 -16.92528 -16.05322 -15.92056 -15.51693 -14.93856 -14.71292 -14.55340 -14.35482 -13.95316 -13.74686 -13.22221 -13.20629 -12.62941 -12.22132 -12.18436 -11.61976 -11.47177 -11.39453 -11.20250 -11.11791 -10.61589 -10.44261 -10.29846 -10.29342 -9.89310 -9.60463 -8.58169 -8.45042 -8.07790 -6.94539 -6.49867 -3.91381 1.50140 1.72691 2.20119 2.61142 3.13226 3.23054 3.28629 3.57024 3.73213 3.76782 3.97384 4.15110 4.24107 4.86893 4.91316 4.93754 5.10456 5.12180 5.18300 5.32086 5.56100 5.65993 5.69191 5.76976 5.87459 5.93199 6.14281 6.25666 6.43585 6.70460 6.88077 7.21958 7.36741 7.48014 7.68520 7.96319 8.20436 8.48752 9.07499 9.41759 9.90832 10.67290 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003852 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.845870 B = 7266.485097 C = 8689.883931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.199 4.199 3 C 0.178 3.822 4 O -0.311 6.311 5 C 0.047 3.953 6 C -0.162 4.162 7 C -0.155 4.155 8 C -0.100 4.100 9 C -0.178 4.178 10 C 0.212 3.788 11 N -0.720 5.720 12 C 0.114 3.886 13 C 0.430 3.570 14 O -0.591 6.591 15 N -0.552 5.552 16 C -0.303 4.303 17 H 0.104 0.896 18 C 0.026 3.974 19 N -0.897 5.897 20 Si 0.932 3.068 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.224 0.776 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.129 0.871 31 H 0.416 0.584 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.395 0.605 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -15.856 -8.990 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.199 4.199 3 C 0.103 3.897 4 O -0.225 6.225 5 C -0.001 4.001 6 C -0.181 4.181 7 C -0.176 4.176 8 C -0.119 4.119 9 C -0.201 4.201 10 C 0.106 3.894 11 N -0.352 5.352 12 C -0.015 4.015 13 C 0.216 3.784 14 O -0.477 6.477 15 N -0.188 5.188 16 C -0.433 4.433 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.538 5.538 20 Si 0.759 3.241 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 H 0.241 0.759 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.147 0.853 31 H 0.256 0.744 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.228 0.772 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.113 -15.567 -8.833 18.167 hybrid contribution -0.455 0.572 0.336 0.804 sum 2.659 -14.995 -8.497 17.439 Atomic orbital electron populations 1.25012 0.95885 0.97485 0.99455 1.22334 0.93669 1.02430 1.01498 1.19155 0.84780 0.88033 0.97683 1.86085 1.19259 1.42398 1.74792 1.18348 0.81920 0.96177 1.03638 1.20916 0.94264 0.99076 1.03874 1.20585 0.93954 0.99222 1.03808 1.20782 0.99192 0.93909 0.97993 1.20553 0.90306 1.02162 1.07097 1.17276 0.90368 0.87644 0.94098 1.44447 1.09055 1.20591 1.61084 1.20940 0.96040 0.87324 0.97182 1.19761 0.89651 0.84081 0.84948 1.90521 1.21198 1.73841 1.62149 1.41789 1.09993 1.18197 1.48797 1.19728 0.89716 1.00914 1.32935 0.87771 1.25292 0.97484 0.97744 0.97166 1.69607 1.17536 1.24892 1.41744 0.85827 0.80506 0.78595 0.79194 1.20281 1.20799 1.19335 0.75942 0.89929 0.89928 0.85854 0.86487 0.86212 0.85267 0.74424 0.90683 0.90681 0.77158 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.20 -2.48 13.73 -37.12 -0.51 -2.99 16 3 C 0.18 2.02 5.21 34.37 0.18 2.20 16 4 O -0.31 -4.77 9.34 -19.75 -0.18 -4.95 16 5 C 0.05 0.70 6.70 -39.08 -0.26 0.44 16 6 C -0.16 -1.92 9.04 -39.46 -0.36 -2.28 16 7 C -0.16 -1.72 10.04 -39.56 -0.40 -2.12 16 8 C -0.10 -1.17 10.04 -39.58 -0.40 -1.57 16 9 C -0.18 -2.44 9.31 -39.41 -0.37 -2.81 16 10 C 0.21 3.39 6.67 -83.56 -0.56 2.84 16 11 N -0.72 -13.17 5.70 -59.67 -0.34 -13.51 16 12 C 0.11 2.06 5.40 -5.19 -0.03 2.04 16 13 C 0.43 10.18 7.85 -10.99 -0.09 10.10 16 14 O -0.59 -16.13 15.24 5.54 0.08 -16.04 16 15 N -0.55 -13.84 5.29 -10.97 -0.06 -13.90 16 16 C -0.30 -8.39 9.68 -14.94 -0.14 -8.54 16 17 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 20 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H 0.22 1.54 7.80 -54.08 -0.42 1.12 16 25 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 26 H 0.08 0.76 7.66 -51.92 -0.40 0.36 16 27 H 0.12 1.11 6.30 -52.48 -0.33 0.78 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.63 6.74 -52.49 -0.35 1.28 16 31 H 0.42 8.53 6.80 -40.82 -0.28 8.25 16 32 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 33 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 34 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 35 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -32.05 316.28 -6.17 -38.22 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -3.68 Total: 16.21 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.45 Total: -3.30 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.33 Total: -50.69 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.10 Total: -20.99 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.05 -6.17 -38.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184627809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.851 kcal (2) G-P(sol) polarization free energy of solvation -32.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds