Wall clock time and date at job start Mon Mar 30 2020 01:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47557 * 209.52410 * 3 2 1 5 5 C 1.36004 * 117.00364 * 179.97438 * 4 3 2 6 6 C 1.38508 * 120.08172 * 359.97438 * 5 4 3 7 7 C 1.38285 * 120.01969 * 180.02562 * 6 5 4 8 8 C 1.38255 * 120.17880 * 0.02562 * 7 6 5 9 9 C 1.38217 * 120.16301 * 359.97438 * 8 7 6 10 10 C 1.38729 * 119.97977 * 0.02562 * 9 8 7 11 11 N 1.39959 * 120.09002 * 179.97438 * 10 9 8 12 12 C 1.46504 * 120.00090 * 0.02562 * 11 10 9 13 13 C 1.50699 * 109.47213 * 180.02562 * 12 11 10 14 14 O 1.21295 * 119.99813 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00231 * 180.02562 * 13 12 11 16 16 C 1.37097 * 120.00245 * 179.97438 * 15 13 12 17 17 H 1.07994 * 119.99684 * 359.97438 * 16 15 13 18 18 C 1.38944 * 119.99672 * 179.97438 * 16 15 13 19 19 N 1.31407 * 120.00622 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99625 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47315 * 89.99974 * 20 18 16 22 22 H 1.48511 * 109.46886 * 210.00086 * 20 18 16 23 23 H 1.48498 * 109.47332 * 329.99737 * 20 18 16 24 24 H 4.38456 * 5.44491 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47220 * 89.52231 * 3 2 1 26 26 H 1.09010 * 109.47261 * 329.52333 * 3 2 1 27 27 H 1.08007 * 119.98777 * 0.03715 * 6 5 4 28 28 H 1.07997 * 119.90476 * 180.27859 * 7 6 5 29 29 H 1.07994 * 119.91483 * 179.97438 * 8 7 6 30 30 H 1.07998 * 120.01004 * 180.02562 * 9 8 7 31 31 H 0.96998 * 120.00271 * 179.97438 * 11 10 9 32 32 H 1.09003 * 109.46734 * 299.99685 * 12 11 10 33 33 H 1.08996 * 109.46988 * 59.99833 * 12 11 10 34 34 H 0.97003 * 119.99913 * 359.97438 * 15 13 12 35 35 H 0.97007 * 120.00473 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1219 1.1732 0.6639 5 6 4.4701 1.3286 0.7522 6 6 5.3158 0.3737 0.2124 7 6 6.6865 0.5327 0.3034 8 6 7.2170 1.6434 0.9329 9 6 6.3800 2.6009 1.4742 10 6 5.0039 2.4481 1.3867 11 7 4.1542 3.4160 1.9345 12 6 4.7177 4.5927 2.6008 13 6 3.5994 5.4716 3.0989 14 8 2.4452 5.1471 2.9148 15 7 3.8816 6.6186 3.7478 16 6 2.8642 7.4184 4.2004 17 1 1.8366 7.1295 4.0366 18 6 3.1553 8.6006 4.8699 19 7 4.4057 8.9524 5.0688 20 14 1.7691 9.6900 5.4872 21 1 1.4020 9.2887 6.8691 22 1 2.2144 11.1068 5.4849 23 1 0.5888 9.5407 4.5984 24 1 -1.0502 -0.0004 0.0000 25 1 3.0093 -0.0077 -1.0276 26 1 3.0097 -0.8849 0.5213 27 1 4.9046 -0.4953 -0.2799 28 1 7.3442 -0.2108 -0.1221 29 1 8.2881 1.7631 1.0019 30 1 6.7971 3.4677 1.9650 31 1 3.1923 3.3080 1.8723 32 1 5.3315 4.2740 3.4433 33 1 5.3319 5.1510 1.8944 34 1 4.8046 6.8783 3.8947 35 1 4.6089 9.7780 5.5359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184627809.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:07 Heat of formation + Delta-G solvation = -8.300033 kcal Electronic energy + Delta-G solvation = -19634.074448 eV Core-core repulsion = 16405.293236 eV Total energy + Delta-G solvation = -3228.781212 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 274.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.22917 -40.25202 -38.55882 -36.44008 -35.74566 -34.37834 -33.38975 -30.95629 -30.92932 -28.51134 -27.95760 -26.18715 -23.27154 -22.67185 -21.16197 -20.03950 -19.52608 -19.27392 -18.18642 -17.23121 -16.99455 -16.96436 -16.47910 -16.30705 -15.96834 -15.63034 -15.27236 -14.95471 -14.50240 -14.47475 -13.87628 -13.62284 -13.55412 -13.47425 -12.94666 -12.48302 -12.45706 -12.35158 -12.15649 -12.10015 -11.59576 -11.51729 -11.16507 -11.00423 -10.55167 -10.10689 -9.41970 -8.52699 -8.10497 -6.02595 0.53611 0.73316 1.30144 1.34793 1.40625 1.53206 1.74039 1.91056 2.20916 2.44055 2.75260 2.99290 3.14422 3.17411 3.43065 4.01818 4.06108 4.19017 4.27444 4.32438 4.39637 4.46037 4.48926 4.60958 4.72989 4.92412 4.98017 5.28744 5.35990 5.52150 5.75914 5.86643 5.97837 6.15321 6.48681 6.51311 6.59852 6.82415 7.03444 7.43660 7.96856 8.64245 Molecular weight = 274.11amu Principal moments of inertia in cm(-1) A = 0.019388 B = 0.003852 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.845870 B = 7266.485097 C = 8689.883931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.245 4.245 3 C 0.171 3.829 4 O -0.342 6.342 5 C 0.030 3.970 6 C -0.160 4.160 7 C -0.145 4.145 8 C -0.102 4.102 9 C -0.183 4.183 10 C 0.175 3.825 11 N -0.738 5.738 12 C 0.131 3.869 13 C 0.427 3.573 14 O -0.632 6.632 15 N -0.558 5.558 16 C -0.340 4.340 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.914 5.914 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.268 1.268 23 H -0.274 1.274 24 H 0.255 0.745 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.136 0.864 31 H 0.401 0.599 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.401 0.599 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.260 -16.884 -9.553 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.246 4.246 3 C 0.098 3.902 4 O -0.258 6.258 5 C -0.018 4.018 6 C -0.179 4.179 7 C -0.165 4.165 8 C -0.121 4.121 9 C -0.206 4.206 10 C 0.072 3.928 11 N -0.371 5.371 12 C 0.003 3.997 13 C 0.215 3.785 14 O -0.520 6.520 15 N -0.194 5.194 16 C -0.470 4.470 17 H 0.097 0.903 18 C -0.208 4.208 19 N -0.554 5.554 20 Si 0.818 3.182 21 H -0.195 1.195 22 H -0.192 1.192 23 H -0.199 1.199 24 H 0.271 0.729 25 H 0.120 0.880 26 H 0.120 0.880 27 H 0.170 0.830 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.154 0.846 31 H 0.237 0.763 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.235 0.765 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.552 -16.623 -9.410 19.636 hybrid contribution -0.846 0.763 0.438 1.221 sum 3.706 -15.860 -8.972 18.595 Atomic orbital electron populations 1.25925 0.96899 0.95970 0.98108 1.22979 0.94824 1.03876 1.02874 1.19453 0.84499 0.87527 0.98748 1.86040 1.19897 1.44266 1.75585 1.18643 0.82213 0.96693 1.04206 1.21293 0.94497 0.99126 1.03024 1.21073 0.94032 0.99315 1.02061 1.21170 1.00478 0.93357 0.97092 1.20800 0.89653 1.03031 1.07084 1.17646 0.91061 0.88126 0.95943 1.44378 1.08462 1.21428 1.62816 1.20802 0.93787 0.86810 0.98272 1.20709 0.90520 0.83838 0.83442 1.90487 1.23539 1.74705 1.63290 1.41813 1.09766 1.18605 1.49265 1.19685 0.89433 1.02609 1.35251 0.90285 1.26061 0.99948 0.98239 0.96532 1.69658 1.18751 1.25406 1.41565 0.84911 0.77453 0.77290 0.78574 1.19499 1.19230 1.19853 0.72878 0.87984 0.87983 0.83009 0.83097 0.83322 0.84644 0.76275 0.88642 0.88639 0.76492 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 19.25 74.32 1.43 -1.79 16 2 C -0.25 -6.11 13.73 31.13 0.43 -5.68 16 3 C 0.17 3.82 5.21 70.18 0.37 4.18 16 4 O -0.34 -10.72 9.34 -93.59 -0.87 -11.59 16 5 C 0.03 0.88 6.70 22.59 0.15 1.03 16 6 C -0.16 -3.41 9.04 22.35 0.20 -3.21 16 7 C -0.14 -2.68 10.04 22.28 0.22 -2.46 16 8 C -0.10 -2.08 10.04 22.27 0.22 -1.85 16 9 C -0.18 -4.76 9.31 22.38 0.21 -4.55 16 10 C 0.18 5.59 6.67 38.22 0.25 5.85 16 11 N -0.74 -27.82 5.70 -342.68 -1.95 -29.77 16 12 C 0.13 4.82 5.40 85.63 0.46 5.29 16 13 C 0.43 20.93 7.85 87.66 0.69 21.62 16 14 O -0.63 -36.15 15.24 -3.08 -0.05 -36.20 16 15 N -0.56 -28.78 5.29 -306.99 -1.62 -30.40 16 16 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 17 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 18 C -0.01 -0.37 5.50 84.93 0.47 0.10 16 19 N -0.91 -48.64 13.05 21.66 0.28 -48.35 16 20 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H 0.26 3.12 7.80 -4.41 -0.03 3.09 16 25 H 0.10 1.76 7.67 -2.39 -0.02 1.75 16 26 H 0.10 1.76 7.66 -2.38 -0.02 1.75 16 27 H 0.15 2.24 6.30 -2.91 -0.02 2.23 16 28 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 29 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.14 3.22 6.74 -2.91 -0.02 3.20 16 31 H 0.40 17.40 6.80 -92.71 -0.63 16.76 16 32 H 0.10 3.08 7.95 -2.39 -0.02 3.06 16 33 H 0.10 3.08 7.95 -2.39 -0.02 3.06 16 34 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 35 H 0.28 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -71.70 316.28 3.50 -68.20 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: -0.23 Total: 43.52 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.92 Total: -0.05 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -3.29 Total: -108.52 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.92 Total: -47.79 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -71.70 3.50 -68.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184627809.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.895 kcal (2) G-P(sol) polarization free energy of solvation -71.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds